TCONS_00020848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020848
Unique NameTCONS_00020848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020848 ID=TCONS_00020848|Name=TCONS_00020848|organism=Clytia hemisphaerica|type=transcript|length=1963bp
gaattatacaaagttctaaaaaagaagaaataaataaaattcaaaacctc
ACAATCACATTGTTAAGTTCAGTGGTCAAAGCATATGTGTGACATTGGTT
TAGGGTGATATTTTTGGACCAAAAAAACTGAAAGAGAAAACACACGAGTG
CAAAACATAGCTGCTACACTTTCACTACATGCTGGATTGACTAAAGGTAC
ACAACTTAAGGGAAACATTTAAGCAAACTATAAGCAAAACACTTTACAGA
AACGCACaacaaaacttaaaaatcataaaatcgtCATGTTGTGAATTTTA
AAGACCGGAATCGCGACGCAGTCACTAACTCATAGACAATTCATATTGAG
AGCACCATGTCATCGGAGCAGTTCTTATCACCAGAGATGATGAGTCATCA
GGATCCTTTACCAACTGATCTAAACGAGACAAACGAGACACTCCATCAAC
TAACCTTTATCACCAGATACGAAAATATACATTGCACTCTTACTGACGTA
TTAGAATCGTACGTCATTCCGTCAATCGGTGCCGTCATCGTCATTTTTAA
CGTCGTAGTTATTTATTACATGTTGAGATATCGACGTTGCCGACAGCATA
ACCCGATTGCTACCGTATATATGATAAACATGGTTATCGGCGACTTATTT
GTCGGTCTTGTTATCATTCTCGTGAAATCTACCGACTACGCTTTCGAATC
TCGACAACACGAATTCTCATACGACAAATATATGTTATTTAGAGATTGCA
TCATTCGTTTATCGCTTTTCATCTCCGTGTTGAATCTTATACCACTGACT
TTAGATCGTGTATGGGCTGTTAAGTATCCGATTTCACACCGACAGAGTAA
AAAGACGATTGCTATTAAAATTTGTATCGCTGTATGGTTTCTTGCTATTT
TATTTATCGCGATCATGTATTTATTCCATTTTACGAGGAATCTTGATCAC
TTTGCTTTAAACAGACTGATTTTCCCGCTCGCTACTTTCCCGACAACTCT
CGTATTCATCGTTTGCTATATCGTTATTTTTCGGGAACTACGACGAAGTC
GTCAGTACCGAGAACGCTCGGGATCCCGAAGTGCGAACATGATGCATGTA
ACGAGTCAGTTAAGTGTTGAATCAAGATCAAGCAGTATCATCAGTCTCGG
taaatttgatgaaaagcgaGGAGAGGTCAAATTCGTACAACTTGCTGTCA
AAACTGTTGTCATATTCATTTTATGTTGGTTTCCCATAGCAACGTGCGGT
ATGGCAAACTGTAATTATAAACTCGAATCTATATTTATGATACTCGGCTT
TGTAAACGCCGCTGTTACGCCGTTAATCTATTACACGCATTTACGGCAAG
CGTTGGGCCGCCGTATACGAAGATTAACGTCTCGACGGCAACCGTCAGCT
GCACCGCTAGCGTTGAGTAAATCCGTTTGTACGGTAATCGGACGAATTGA
CCGACAAGTGGAGGATACACCGACAAGCGTACGGAAAGGGAATTGTAGCA
TTATAGCAGCATCCGAGAATAACAGACTGGTTGTTGCTAGATCATATTAA
CGAATTTTCCGGTCGATATTCGGATGACACTATAGAGCAACATAATGGCT
GTTGTTTGGTCGTTGTAAGCAAATTCTATGTTTGGATTGATGGAATGGGT
CCCGGTGGAAACAAAATACGAAAGACAATTCTCCgataaaattaaattct
caAATTCAAACTGGGCGTTACAGGAGGGCCTTGCCCTTCATGACCCATGT
CGGATATGTTCGTCATCGGTCTTGAAAAGAttaaataaattgaataaatt
tttaatttgatatgttattatttttattatatttcatttatcaaatgaaa
ttttttaattaatttattgATCGAGGAAGATATTATTAATGACAATGGAA
AAGCGAAAATATTGCTTCAAATAATATTGTACTTTTATCGTCAACATGAA
acaaatatgagca
Run BLAST on NCBI

protein sequence of TCONS_00020848-protein

>TCONS_00020848-protein ID=TCONS_00020848-protein|Name=TCONS_00020848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MSSEQFLSPEMMSHQDPLPTDLNETNETLHQLTFITRYENIHCTLTDVLE
SYVIPSIGAVIVIFNVVVIYYMLRYRRCRQHNPIATVYMINMVIGDLFVG
LVIILVKSTDYAFESRQHEFSYDKYMLFRDCIIRLSLFISVLNLIPLTLD
RVWAVKYPISHRQSKKTIAIKICIAVWFLAILFIAIMYLFHFTRNLDHFA
LNRLIFPLATFPTTLVFIVCYIVIFRELRRSRQYRERSGSRSANMMHVTS
QLSVESRSSSIISLGKFDEKRGEVKFVQLAVKTVVIFILCWFPIATCGMA
NCNYKLESIFMILGFVNAAVTPLIYYTHLRQALGRRIRRLTSRRQPSAAP
LALSKSVCTVIGRIDRQVEDTPTSVRKGNCSIIAASENNRLVVARSY
Run BLAST on NCBI

transcript from alignment at sc0000371:93324..95863-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020848 ID=TCONS_00020848|Name=TCONS_00020848|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at sc0000371:93324..95863- (Clytia hemisphaerica)
GAATTATACAAAGTTCTAAAAAAGAAGAAATAAATAAAATTCAAAACCTC
ACAATCACATTGTTAAGTTCAGTGGTCAAAGCATATGTGTGACATTGGTT
TAGGGTGATATTTTTGGACCAAAAAAACTGAAAGAGAAAACACACGAGTG
CAAAACATAGCTGCTACACTTTCACTACATGCTGGATTGACTAAAGGTAC
ACAACTTAAGGGAAACATTTAAGCAAACTATAAGCAAAACACTTTACAGA
AACGCACAACAAAACTTAAAAATCATAAAATCGTCATGTTGTGAATTTTA
AAGACCGGAATCGCGACGCAGTCACTAACTCATAGACAATTCATATTGAG
AGCACCATGTCATCGGAGCAGTTCTTATCACCAGAGATGATGAGTCATCA
GGATCCTTTACCAACTGATCTAAACGAGACAAACGAGACACTCCATCAAC
TAACCTTTATCACCAGATACGAAAATATACATTGCACTCTTACTGACGTA
TTAGAATCGTACGTCATTCCGTCAATCGGTGCCGTCATCGTCATTTTTAA
CGTCGTAGTTATTTATTACATGTTGAGATATCGACGTTGCCGACAGCATA
ACCCGATTGCTACCGTATATATGATAAACATGGTTATCGGCGACTTATTT
GTCGGTCTTGTTATCATTCTCGTGAAATCTACCGACTACGCTTTCGAATC
TCGACAACACGAATTCTCATACGACAAATATATGTTATTTAGAGATTGCA
TCATTCGTTTATCGCTTTTCATCTCCGTGTTGAATCTTATACCACTGACT
TTAGATCGTGTATGGGCTGTTAAGTATCCGATTTCACACCGACAGAGTAA
AAAGACGATTGCTATTAAAATTTGTATCGCTGTATGGTTTCTTGCTATTT
TATTTATCGCGATCATGTATTTATTCCATTTTACGAGGAATCTTGATCAC
TTTGCTTTAAACAGACTGATTTTCCCGCTCGCTACTTTCCCGACAACTCT
CGTATTCATCGTTTGCTATATCGTTATTTTTCGGGAACTACGACGAAGTC
GTCAGTACCGAGAACGCTCGGGATCCCGAAGTGCGAACATGATGCATGTA
ACGAGTCAGTTAAGTGTTGAATCAAGATCAAGCAGTATCATCAGTCTCGG
TAAATTTGATGAAAAGCGAGGAGAGGTACGGAAATCTTTATTACAGTAAA
CCATAGGATAGGAGGAACGAGCAATAGCGTAGACAGGAAGGGCGCAAAAT
TTGTGTAGGAGAGCAGACTTTTATGACACTGATTATCTATTCATAATGTA
AAAACATAATTAGAGTGTCATAAAAATCTGCTCTCCTATACAGATTTTGC
GCCCCACCTGTCTACGCTACTGAATGAGTATACTCTAACCCCTGACCTAA
GTGGCTCGGTTACCTAACAAAATCTACAAGGGGGACTATGAAAATAGTAA
AATTTCATCAGTTTGACTTTGCAAAAAACGTTTACCTCGATCTTCGCCGG
GAGGGGGGATAAATCTCCAGCGTGTTCATTTATCACCCCATCGGGCCTTA
AAATTAGGTCCTTTTGACAACTTTTTTCACCGAGTTATCCACCGGGCTGG
ATATGACCGGGTTACTGACACAAGGGAGAATTCGTATCTCTTCTTTATGT
TACGAAATTAGGTTGCACAGTGGACCTTATCATTTTAGGGTCTTTTATAT
TGGCTGAAAATTTAAAGAAATAATCCAAATTTTCCACCATTTATTTTTTC
AGGTCAAATTCGTACAACTTGCTGTCAAAACTGTTGTCATATTCATTTTA
TGTTGGTTTCCCATAGCAACGTGCGGTATGGCAAACTGTAATTATAAACT
CGAATCTATATTTATGATACTCGGCTTTGTAAACGCCGCTGTTACGCCGT
TAATCTATTACACGCATTTACGGCAAGCGTTGGGCCGCCGTATACGAAGA
TTAACGTCTCGACGGCAACCGTCAGCTGCACCGCTAGCGTTGAGTAAATC
CGTTTGTACGGTAATCGGACGAATTGACCGACAAGTGGAGGATACACCGA
CAAGCGTACGGAAAGGGAATTGTAGCATTATAGCAGCATCCGAGAATAAC
AGACTGGTTGTTGCTAGATCATATTAACGAATTTTCCGGTCGATATTCGG
ATGACACTATAGAGCAACATAATGGCTGTTGTTTGGTCGTTGTAAGCAAA
TTCTATGTTTGGATTGATGGAATGGGTCCCGGTGGAAACAAAATACGAAA
GACAATTCTCCGATAAAATTAAATTCTCAAATTCAAACTGGGCGTTACAG
GAGGGCCTTGCCCTTCATGACCCATGTCGGATATGTTCGTCATCGGTCTT
GAAAAGATTAAATAAATTGAATAAATTTTTAATTTGATATGTTATTATTT
TTATTATATTTCATTTATCAAATGAAATTTTTTAATTAATTTATTGATCG
AGGAAGATATTATTAATGACAATGGAAAAGCGAAAATATTGCTTCAAATA
ATATTGTACTTTTATCGTCAACATGAAACAAATATGAGCA

Coding sequence (CDS) from alignment at sc0000371:93324..95863-

>TCONS_00020848 ID=TCONS_00020848|Name=TCONS_00020848|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0000371:93324..95863- (Clytia hemisphaerica)
GTCAAATTCGTACAACTTGCTGTCAAAACTGTTGTCATATTCATTTTATG
TTGGTTTCCCATAGCAACGTGCGGTATGGCAAACTGTAATTATAAACTCG
AATCTATATTTATGATACTCGGCTTTGTAAACGCCGCTGTTACGCCGTTA
ATCTATTACACGCATTTACGGCAAGCGTTGGGCCGCCGTATACGAAGATT
AACGTCTCGACGGCAACCGTCAGCTGCACCGCTAGCGTTGAGTAAATCCG
TTTGTACGGTAATCGGACGAATTGACCGACAAGTGGAGGATACACCGACA
AGCGTACGGAAAGGGAATTGTAGCATTATAGCAGCATCCGAGAATAACAG
ACTGGTTGTTGCTAGATCATATTAAATGTCATCGGAGCAGTTCTTATCAC
CAGAGATGATGAGTCATCAGGATCCTTTACCAACTGATCTAAACGAGACA
AACGAGACACTCCATCAACTAACCTTTATCACCAGATACGAAAATATACA
TTGCACTCTTACTGACGTATTAGAATCGTACGTCATTCCGTCAATCGGTG
CCGTCATCGTCATTTTTAACGTCGTAGTTATTTATTACATGTTGAGATAT
CGACGTTGCCGACAGCATAACCCGATTGCTACCGTATATATGATAAACAT
GGTTATCGGCGACTTATTTGTCGGTCTTGTTATCATTCTCGTGAAATCTA
CCGACTACGCTTTCGAATCTCGACAACACGAATTCTCATACGACAAATAT
ATGTTATTTAGAGATTGCATCATTCGTTTATCGCTTTTCATCTCCGTGTT
GAATCTTATACCACTGACTTTAGATCGTGTATGGGCTGTTAAGTATCCGA
TTTCACACCGACAGAGTAAAAAGACGATTGCTATTAAAATTTGTATCGCT
GTATGGTTTCTTGCTATTTTATTTATCGCGATCATGTATTTATTCCATTT
TACGAGGAATCTTGATCACTTTGCTTTAAACAGACTGATTTTCCCGCTCG
CTACTTTCCCGACAACTCTCGTATTCATCGTTTGCTATATCGTTATTTTT
CGGGAACTACGACGAAGTCGTCAGTACCGAGAACGCTCGGGATCCCGAAG
TGCGAACATGATGCATGTAACGAGTCAGTTAAGTGTTGAATCAAGATCAA
GCAGTATCATCAGTCTCGGTAAATTTGATGAAAAGCGAGGAGAGGTCAAA
TTCGTACAACTTGCTGTCAAAACTGTTGTCATATTCATTTTATGTTGGTT
TCCCATAGCAACGTGCGGTATGGCAAACTGTAATTATAAACTCGAATCTA
TATTTATGATACTCGGCTTTGTAAACGCCGCTGTTACGCCGTTAATCTAT
TACACGCATTTACGGCAAGCGTTGGGCCGCCGTATACGAAGATTAACGTC
TCGACGGCAACCGTCAGCTGCACCGCTAGCGTTGAGTAAATCCGTTTGTA
CGGTAATCGGACGAATTGACCGACAAGTGGAGGATACACCGACAAGCGTA
CGGAAAGGGAATTGTAGCATTATAGCAGCATCCGAGAATAACAGACTGGT
TGTTGCTAGATCATATTAAATGTCATCGGAGCAGTTCTTATCACCAGAGA
TGATGAGTCATCAGGATCCTTTACCAACTGATCTAAACGAGACAAACGAG
ACACTCCATCAACTAACCTTTATCACCAGATACGAAAATATACATTGCAC
TCTTACTGACGTATTAGAATCGTACGTCATTCCGTCAATCGGTGCCGTCA
TCGTCATTTTTAACGTCGTAGTTATTTATTACATGTTGAGATATCGACGT
TGCCGACAGCATAACCCGATTGCTACCGTATATATGATAAACATGGTTAT
CGGCGACTTATTTGTCGGTCTTGTTATCATTCTCGTGAAATCTACCGACT
ACGCTTTCGAATCTCGACAACACGAATTCTCATACGACAAATATATGTTA
TTTAGAGATTGCATCATTCGTTTATCGCTTTTCATCTCCGTGTTGAATCT
TATACCACTGACTTTAGATCGTGTATGGGCTGTTAAGTATCCGATTTCAC
ACCGACAGAGTAAAAAGACGATTGCTATTAAAATTTGTATCGCTGTATGG
TTTCTTGCTATTTTATTTATCGCGATCATGTATTTATTCCATTTTACGAG
GAATCTTGATCACTTTGCTTTAAACAGACTGATTTTCCCGCTCGCTACTT
TCCCGACAACTCTCGTATTCATCGTTTGCTATATCGTTATTTTTCGGGAA
CTACGACGAAGTCGTCAGTACCGAGAACGCTCGGGATCCCGAAGTGCGAA
CATGATGCATGTAACGAGTCAGTTAAGTGTTGAATCAAGATCAAGCAGTA
TCATCAGTCTCGGTAAATTTGATGAAAAGCGAGGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011690XLOC_011690Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020848-proteinTCONS_00020848-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020848-exon-sc0000371-1575043694:94689..95863TCONS_00020848-exon-sc0000371-1575043694:94689..95863Clytia hemisphaericaexon
TCONS_00020848-exon-sc0000371-1575043694:93324..94111TCONS_00020848-exon-sc0000371-1575043694:93324..94111Clytia hemisphaericaexon
TCONS_00020848-exon-sc0000371-1510915933:94689..95863TCONS_00020848-exon-sc0000371-1510915933:94689..95863Clytia hemisphaericaexon
TCONS_00020848-exon-sc0000371-1510915933:93324..94111TCONS_00020848-exon-sc0000371-1510915933:93324..94111Clytia hemisphaericaexon
TCONS_00020848-exon-sc0000371-1491911889:94689..95863TCONS_00020848-exon-sc0000371-1491911889:94689..95863Clytia hemisphaericaexon
TCONS_00020848-exon-sc0000371-1491911889:93324..94111TCONS_00020848-exon-sc0000371-1491911889:93324..94111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:93324..95863 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.163662	0.193991	1.45626	2.16673	5.23272	7.38942	2.54105	5.8329	0.511183	0.293375	2.42342	0.949073	4.56019e-10	0.0778163	0	0	0	4.75613e-10	1.34332e-09	2.17009e-10	4.47618e-10	4.05499e-10	0	5.16514e-10	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top