|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020845 ID=TCONS_00020845|Name=TCONS_00020845|organism=Clytia hemisphaerica|type=transcript|length=2261bp
TATAAAATTAGTTAATCTTATAACTAAAGGATAGAGCGATTAACATAACG
ACGTCTGTTATTTAGCTTTTGATTATAAAAGAATGACACAAAGGTAATTT
GATGACGGTGACGATGAAATGACATATTTTCTATCTCTTTAAAAACAATG
AACTGCTTTCAACCACTCCTCACCTCTGTACTGCGCATGTCCTTAAAAGA
CCGTTTTTTCTTACTTCACCTTATTAGgtgattttttataaataaacaaA
TGGGCTTGTCATTCGTATGTTGTCAGAATAAAAAGCAGTGATTTTTGAAG
GGTTGAATTATTCCTCTTGGATATCTTCGAACTATCAAGACATAAGTCGA
AACATTTCTGTCTTTTCTTAGACATCTAACACAAATTCATATACAAAATG
GCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGATCTGGTATGTG
CAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCA
TTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTATGGGACAAAAA
GACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTATCCTCACCTT
GAAATACCCCATCGAACACGGAATCGTCACCAACTGGGATGATATGGAAA
AAGTGAGTTTTGTTTGTTTGCAAGAAACTTTAAACCTAGAGTCCTTTAAC
CTGTTTGTTCTGTTTTGAAAGGCTGTGCTTCTTGAGGGGAACTTCTTAAC
ATTTGGGACAAAATTCTCTTCAAAAGTCTCAAGTGAGTAAGGCCTGGAAA
AATTTGTTACTTTGTACATGGGCGTGGTGCTATTTGTTCTACTGaattgc
attttcttgaaacagcaaaaaaagtttattaagTGAAACTGAAACAAAGA
TTGCTTCTTTTTGCGTATTATGCTTTTCTTGTTGAAAGAAAACAAACCTT
GAGGTTGAGGGTTGATGAAAACCTTAAAACTTAGACCTTTTTGCGTGGGT
GTAACACTTTGAAAATTATTAAGCTAAATCTTTTAAGTAACTTGTTTGGG
CGTTGGTTAAATAATTTAATTCtgatttgtttcatttttttaatgagcTT
TCATACCTTtacttcaaactgaaaacatTTAACTAGTTAACACTTTTGAT
GGAATATCTTCCTTGTATTACATATGGTTCTTGACTTAACTTATTCTAAA
CATAATAATATTGTTTCCATAGATCTGGCATCACACATTCTATAATGAAC
TCCGTGTCGCACCAGAAGAGCACCCTGTCCTCCTTACCGAAGCTCCATTG
AACCCAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTT
CAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTCTTATCATTGTACG
CCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAGATGGTGTCTCT
CACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGCCATCATCCG
TCTCGATTTGGCTGGACGTGATTTGACCGACTACTTGATGAAAATCTTGA
CCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGAAATTGTCCGT
GAcatcaaagaaaaattgtgCTATGTTGCCTTGGACTTCGAACAAGAAAT
GCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTATGAATTACCTG
ATGGACAAGTCATCACCATTGGAAATGAACGATTCCGATGCCCAGAAACC
CTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGTATCCACGAAAC
CACCTACAACTCCATCATGAAATGCGATGTTGACATCCGTAAGGATTTGT
ATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCCCAGGTATTGCT
GACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCACCAACCATGAAAAT
CAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTGGATCGGAGGAT
CCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTGGATCTCCAAACAA
GAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATGCTTctaaat
tatttatttattttcttccaATTTTATTTTCGACTTATGTCTTCTTATGG
TTCGAATTATGCAATTCTTTGTAAAAATTCCGTTATGTACATAAATACAA
TTTAACATACCAAAATATTCAACTTGGGTTATTCATTTCCCTGTGTTATT
CAAACCTTCGA Run BLAST on NCBI transcript from alignment at sc0000371:25190..27450- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020845 ID=TCONS_00020845|Name=TCONS_00020845|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at sc0000371:25190..27450- (Clytia hemisphaerica)
TATAAAATTAGTTAATCTTATAACTAAAGGATAGAGCGATTAACATAACG
ACGTCTGTTATTTAGCTTTTGATTATAAAAGAATGACACAAAGGTAATTT
GATGACGGTGACGATGAAATGACATATTTTCTATCTCTTTAAAAACAATG
AACTGCTTTCAACCACTCCTCACCTCTGTACTGCGCATGTCCTTAAAAGA
CCGTTTTTTCTTACTTCACCTTATTAGGTGATTTTTTATAAATAAACAAA
TGGGCTTGTCATTCGTATGTTGTCAGAATAAAAAGCAGTGATTTTTGAAG
GGTTGAATTATTCCTCTTGGATATCTTCGAACTATCAAGACATAAGTCGA
AACATTTCTGTCTTTTCTTAGACATCTAACACAAATTCATATACAAAATG
GCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGATCTGGTATGTG
CAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCA
TTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTATGGGACAAAAA
GACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTATCCTCACCTT
GAAATACCCCATCGAACACGGAATCGTCACCAACTGGGATGATATGGAAA
AAGTGAGTTTTGTTTGTTTGCAAGAAACTTTAAACCTAGAGTCCTTTAAC
CTGTTTGTTCTGTTTTGAAAGGCTGTGCTTCTTGAGGGGAACTTCTTAAC
ATTTGGGACAAAATTCTCTTCAAAAGTCTCAAGTGAGTAAGGCCTGGAAA
AATTTGTTACTTTGTACATGGGCGTGGTGCTATTTGTTCTACTGAATTGC
ATTTTCTTGAAACAGCAAAAAAAGTTTATTAAGTGAAACTGAAACAAAGA
TTGCTTCTTTTTGCGTATTATGCTTTTCTTGTTGAAAGAAAACAAACCTT
GAGGTTGAGGGTTGATGAAAACCTTAAAACTTAGACCTTTTTGCGTGGGT
GTAACACTTTGAAAATTATTAAGCTAAATCTTTTAAGTAACTTGTTTGGG
CGTTGGTTAAATAATTTAATTCTGATTTGTTTCATTTTTTTAATGAGCTT
TCATACCTTTACTTCAAACTGAAAACATTTAACTAGTTAACACTTTTGAT
GGAATATCTTCCTTGTATTACATATGGTTCTTGACTTAACTTATTCTAAA
CATAATAATATTGTTTCCATAGATCTGGCATCACACATTCTATAATGAAC
TCCGTGTCGCACCAGAAGAGCACCCTGTCCTCCTTACCGAAGCTCCATTG
AACCCAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTT
CAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTCTTATCATTGTACG
CCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAGATGGTGTCTCT
CACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGCCATCATCCG
TCTCGATTTGGCTGGACGTGATTTGACCGACTACTTGATGAAAATCTTGA
CCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGAAATTGTCCGT
GACATCAAAGAAAAATTGTGCTATGTTGCCTTGGACTTCGAACAAGAAAT
GCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTATGAATTACCTG
ATGGACAAGTCATCACCATTGGAAATGAACGATTCCGATGCCCAGAAACC
CTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGTATCCACGAAAC
CACCTACAACTCCATCATGAAATGCGATGTTGACATCCGTAAGGATTTGT
ATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCCCAGGTATTGCT
GACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCACCAACCATGAAAAT
CAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTGGATCGGAGGAT
CCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTGGATCTCCAAACAA
GAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATGCTTCTAAAT
TATTTATTTATTTTCTTCCAATTTTATTTTCGACTTATGTCTTCTTATGG
TTCGAATTATGCAATTCTTTGTAAAAATTCCGTTATGTACATAAATACAA
TTTAACATACCAAAATATTCAACTTGGGTTATTCATTTCCCTGTGTTATT
CAAACCTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020845-exon-sc0000371-1575043694:25190..27450 | TCONS_00020845-exon-sc0000371-1575043694:25190..27450 | Clytia hemisphaerica | exon |
| TCONS_00020845-exon-sc0000371-1510915933:25190..27450 | TCONS_00020845-exon-sc0000371-1510915933:25190..27450 | Clytia hemisphaerica | exon |
| TCONS_00020845-exon-sc0000371-1491911889:25190..27450 | TCONS_00020845-exon-sc0000371-1491911889:25190..27450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000371 | supercontig | sc0000371:25190..27450 - |
Blast
BLAST of TCONS_00020845 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1) HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0 Identity = 278/291 (95.53%), Postives = 287/291 (98.63%), Query Frame = 2
Query: 1223 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 2095
IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 85 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375 HSP 2 Score: 178.333 bits (451), Expect = 4.182e-49 Identity = 79/84 (94.05%), Postives = 84/84 (100.00%), Query Frame = 2
Query: 404 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKV 655
E+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 85
The following BLAST results are available for this feature:
|
