TCONS_00020834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020834
Unique NameTCONS_00020834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020834 ID=TCONS_00020834|Name=TCONS_00020834|organism=Clytia hemisphaerica|type=transcript|length=502bp
TCCAGAATCTGAAAAAGATGTCTGTGAATATAAAGGACACACTGTGGAGT
ACTGCACTGACGCTGTTATTTTGAATGAGGATGAACAAATTATGACTGTT
TCACAAGAAGGAACTTTAAGAATTTTCGATGCCAACACTGGAGAAAATAT
TTATGGATTTTACAATCATCGATCTCAAGGTTTTACGTGTGTAGCCGCTC
ATCCATCTGAGAAAATCTTCTTAGCGgctagtgaaagttcgtcggtgtAC
GTCCTTAAAACGACTCCTAATGATCAACTTAATAATGGTCATAAGCAGTA
AAGCATCGGTTGGTTCAAAGAAGACAGACACACTTGCATACTTATGGATG
TAGTTGTTCAAGCACTTTTTTCTTCGCTTGACATTTTACGGGTCAATTCA
TTCATTTATAGATCTGAGTATTACTATTAATAATTCATCCATAcactcat
tcattcattcatccaatcattcattcattcacgcATTTATTTATCATTTC
AC
Run BLAST on NCBI

transcript from alignment at sc0000371:69109..69931+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020834 ID=TCONS_00020834|Name=TCONS_00020834|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at sc0000371:69109..69931+ (Clytia hemisphaerica)
TCCAGAATCTGAAAAAGATGTCTGTGAATATAAAGGTATCATTTTTGAAC
TCGGTGATCAAGTTCAGATTGTATTTTGATATACAATCGTAGTTTTAGTC
GACTTCTACAAATTTTACGTAATTTTCTGTCAAAAATGAATTCGCAAAAA
CTTGTGCCACTTTATCATTTTTTCAATCATGTTATATGTGTCACTTTTAT
AAATTCTGCCTTTACAACGACCTTTTTTGTTTACTTACCATCGCCGCCAT
TTTCCGCCCATCTTCTGTTTTACTGCTGAAAGATAAGTCCACGAATAAAA
GAAACAAGTTAAAGCATTTTATAAATCCCCTTTACTTTCAATATACAATC
TTTTAGGACACACTGTGGAGTACTGCACTGACGCTGTTATTTTGAATGAG
GATGAACAAATTATGACTGTTTCACAAGAAGGAACTTTAAGAATTTTCGA
TGCCAACACTGGAGAAAATATTTATGGATTTTACAATCATCGATCTCAAG
GTTTTACGTGTGTAGCCGCTCATCCATCTGAGAAAATCTTCTTAGCGgct
agtgaaagttcgtcggtgtACGTCCTTAAAACGACTCCTAATGATCAACT
TAATAATGGTCATAAGCAGTAAAGCATCGGTTGGTTCAAAGAAGACAGAC
ACACTTGCATACTTATGGATGTAGTTGTTCAAGCACTTTTTTCTTCGCTT
GACATTTTACGGGTCAATTCATTCATTTATAGATCTGAGTATTACTATTA
ATAATTCATCCATAcactcattcattcattcatccaatcattcattcatt
cacgcATTTATTTATCATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011685XLOC_011685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020834-exon-sc0000371-1491911889:69109..69143TCONS_00020834-exon-sc0000371-1491911889:69109..69143Clytia hemisphaericaexon
TCONS_00020834-exon-sc0000371-1510915933:69109..69143TCONS_00020834-exon-sc0000371-1510915933:69109..69143Clytia hemisphaericaexon
TCONS_00020834-exon-sc0000371-1575043694:69109..69143TCONS_00020834-exon-sc0000371-1575043694:69109..69143Clytia hemisphaericaexon
TCONS_00020834-exon-sc0000371-1491911889:69465..69931TCONS_00020834-exon-sc0000371-1491911889:69465..69931Clytia hemisphaericaexon
TCONS_00020834-exon-sc0000371-1510915933:69465..69931TCONS_00020834-exon-sc0000371-1510915933:69465..69931Clytia hemisphaericaexon
TCONS_00020834-exon-sc0000371-1575043694:69465..69931TCONS_00020834-exon-sc0000371-1575043694:69465..69931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:69109..69931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4799	2.73115	0	0.400052	0	0	0	0	0	0	0.0777446	0.0344686	1.74517	0	0	0.370093	0.723542	0.496515	1.45843	0.547695	0.974221	0	1.69238	0.946483	0.868786	0	0.452602	0.554346	0.264698	0.59473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top