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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020720 ID=TCONS_00020720|Name=TCONS_00020720|organism=Clytia hemisphaerica|type=transcript|length=1973bp
attcaatatcattttgtcaaaatttgtgggtgacatattatttaaaaatt
ttcatgataatactattcgtatataattgtttcagacatactatactagt
agtattatgtgttatgtagtacacgtgttatgaattatacgtcatgatat
cgttatattttttccggtctgtaaattgtatgccccgtgccccatgcccc
gtgacccgtaccccgtgccccgtaacccgtgacccgtgacccgtgtttcg
aactagccgtatAACCAGTGTCATTACATGTCATTGCAGCCGATCTAACC
AATGGACTGGAATTCTCGTTCATGCATTGTACTGTACGCAAACTTATAAC
ATGTGCCACTCATATTCTACTCCATCAATCAGCAAAACTGAAGTTTTGTT
GGTGTTGGGTACAAGTTGTACATGCTACCCATTTTCTGGTGGCGTTTGAA
CGGAATGTCTCGTAAAACATTTCCTACAACAAACAGTCAGCTGTTTCTTG
ATAAACGCTAATATCTTATCGTCCCATATGATATACACCAACGAATTAAA
ACCACTGTACGCAATACAAATCGAATAAAACGCACTAAAAGTTAACAATT
TTCTCGATAATTCACTTTGGGTTGGATAATTCGTCAAGCTACCGAGGCTA
AAACACATATTACACATTGGTACGTTAAAACAAACATACAGAAAATTTAG
CAGCAATAACCGTTTTACTGCTTTTCGGTTCCGATTTAAATGCGCTTGAT
TTTCGGGAAACGATTGTATTTTGTAACGTAGGGTATACCATAGTATAGCC
ATGAGCATTACACAACATAACATGCATAAAGATAGAAATATCCCTAAAGA
AAGCCAGTGTATGCGATAATAGAAGGACGAGAAAGTTCCAtgatacagat
aaaaaaatgtagctCCGGTTGCTAAGGAGATACCAAGCCCAACAACCAAC
ATGGTATATATGAAGCGCggattcggtttttttaacggAACACTTAAACA
CATATAGCGCACTATACCAATTACGAGTAGAATGGAAAAATCGAATGTTA
ATAGGAATATTAAGATTGAGTCAGTGATAGATTCGTTTAAACAATGTTTT
GTGAACAGCCCGATACAGGAGTTGACTGGCGATATCGCACTGGTGCAGAT
TCCAACACAGGACGAATAGATAAACAAACGTCTTGGCATAGAAATCACGC
TGCTCGTTTTTCGTATCCCAATAATAATTAACGAATTCGTGATTAAAAGA
AAGACTGAAATTATGATTCGAAATGGTCGCTGTAAATTTTGTTGATGTGT
CCATGATTTTCGATGCGCTACAAGCGCTAGATGTTCATCATGTGGCTCTT
GTGTTGAGATATTGAAGAAAGCGTGCATCAGTTTGTCACTTAGACAGCGC
ATTGTATTTGTGATGGTGAATGAATAGTAATAACGAGGAAATTGTTCTTC
TTTTGCTCGTGTCTGTTGGTTTCAAGTAAACTGTTATTTGAAATCGTGCT
GTTGATGTTGCATTTGCTTTAAGTTTGGTTTTCGAGCTTCTGATGCTTGA
AATGTTTGATAAAACAATGATTCATAAACAGAAGCACAGCATTAACATAG
CCACCACTGTATCCTTGAtatgcgagaaaaaaatgaagtatAGGCGTCAC
CCCTGCATCACAAAGTCGTATTTATCAATTGTTGAAGATTGATTCCAGTA
TTGTCCCCAGTTTCGGATATTTTCTCGGTTTCCAACGGTGAATaacatta
attttttgttttgattccaaCTGATAGTGAATTGTAATTGATCTGTTCTC
CCTTGCTTCACCTGCCctataaaaatgaaatggaaGATATCCTGAAACTT
CTAGAAATAAATACGTCCCTTGTAGCCAGCATCaaacaattttctaattt
tagtGGTGAATATTCTTGGACGGAAAGGTGGTGTTCGGTGTACTGTACTG
GCTATATCATATGAGAAGTTTAC Run BLAST on NCBI protein sequence of TCONS_00020720-protein >TCONS_00020720-protein ID=TCONS_00020720-protein|Name=TCONS_00020720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MRCLSDKLMHAFFNISTQEPHDEHLALVAHRKSWTHQQNLQRPFRIIISV
FLLITNSLIIIGIRKTSSVISMPRRLFIYSSCVGICTSAISPVNSCIGLF
TKHCLNESITDSILIFLLTFDFSILLVIGIVRYMCLSVPLKKPNPRFIYT
MLVVGLGISLATGATFFYLYHGTFSSFYYRIHWLSLGIFLSLCMLCCVML
MAILWYTLRYKIQSFPENQAHLNRNRKAVKRLLLLNFLYVCFNVPMCNMC
FSLGSLTNYPTQSELSRKLLTFSAFYSICIAYSGFNSLVYIIWDDKILAF
IKKQLTVCCRKCFTRHSVQTPPENG Run BLAST on NCBI transcript from alignment at sc0000363:83011..84983 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020720 ID=TCONS_00020720|Name=TCONS_00020720|organism=Clytia hemisphaerica|type=transcript|length=1973bp|location=Sequence derived from alignment at sc0000363:83011..84983 (Clytia hemisphaerica)
GTAAACTTCTCATATGATATAGCCAGTACAGTACACCGAACACCACCTTT
CCGTCCAAGAATATTCACCactaaaattagaaaattgtttGATGCTGGCT
ACAAGGGACGTATTTATTTCTAGAAGTTTCAGGATATCttccatttcatt
tttatagGGCAGGTGAAGCAAGGGAGAACAGATCAATTACAATTCACTAT
CAGttggaatcaaaacaaaaaattaatgttATTCACCGTTGGAAACCGAG
AAAATATCCGAAACTGGGGACAATACTGGAATCAATCTTCAACAATTGAT
AAATACGACTTTGTGATGCAGGGGTGACGCCTatacttcatttttttctc
gcataTCAAGGATACAGTGGTGGCTATGTTAATGCTGTGCTTCTGTTTAT
GAATCATTGTTTTATCAAACATTTCAAGCATCAGAAGCTCGAAAACCAAA
CTTAAAGCAAATGCAACATCAACAGCACGATTTCAAATAACAGTTTACTT
GAAACCAACAGACACGAGCAAAAGAAGAACAATTTCCTCGTTATTACTAT
TCATTCACCATCACAAATACAATGCGCTGTCTAAGTGACAAACTGATGCA
CGCTTTCTTCAATATCTCAACACAAGAGCCACATGATGAACATCTAGCGC
TTGTAGCGCATCGAAAATCATGGACACATCAACAAAATTTACAGCGACCA
TTTCGAATCATAATTTCAGTCTTTCTTTTAATCACGAATTCGTTAATTAT
TATTGGGATACGAAAAACGAGCAGCGTGATTTCTATGCCAAGACGTTTGT
TTATCTATTCGTCCTGTGTTGGAATCTGCACCAGTGCGATATCGCCAGTC
AACTCCTGTATCGGGCTGTTCACAAAACATTGTTTAAACGAATCTATCAC
TGACTCAATCTTAATATTCCTATTAACATTCGATTTTTCCATTCTACTCG
TAATTGGTATAGTGCGCTATATGTGTTTAAGTGTTccgttaaaaaaaccg
aatccGCGCTTCATATATACCATGTTGGTTGTTGGGCTTGGTATCTCCTT
AGCAACCGGagctacatttttttatctgtatcaTGGAACTTTCTCGTCCT
TCTATTATCGCATACACTGGCTTTCTTTAGGGATATTTCTATCTTTATGC
ATGTTATGTTGTGTAATGCTCATGGCTATACTATGGTATACCCTACGTTA
CAAAATACAATCGTTTCCCGAAAATCAAGCGCATTTAAATCGGAACCGAA
AAGCAGTAAAACGGTTATTGCTGCTAAATTTTCTGTATGTTTGTTTTAAC
GTACCAATGTGTAATATGTGTTTTAGCCTCGGTAGCTTGACGAATTATCC
AACCCAAAGTGAATTATCGAGAAAATTGTTAACTTTTAGTGCGTTTTATT
CGATTTGTATTGCGTACAGTGGTTTTAATTCGTTGGTGTATATCATATGG
GACGATAAGATATTAGCGTTTATCAAGAAACAGCTGACTGTTTGTTGTAG
GAAATGTTTTACGAGACATTCCGTTCAAACGCCACCAGAAAATGGGTAGC
ATGTACAACTTGTACCCAACACCAACAAAACTTCAGTTTTGCTGATTGAT
GGAGTAGAATATGAGTGGCACATGTTATAAGTTTGCGTACAGTACAATGC
ATGAACGAGAATTCCAGTCCATTGGTTAGATCGGCTGCAATGACATGTAA
TGACACTGGTTatacggctagttcgaaacacgggtcacgggtcacgggtt
acggggcacggggtacgggtcacggggcatggggcacggggcatacaatt
tacagaccggaaaaaatataacgatatcatgacgtataattcataacacg
tgtactacataacacataatactactagtatagtatgtctgaaacaatta
tatacgaatagtattatcatgaaaatttttaaataatatgtcacccacaa
attttgacaaaatgatattgaat Coding sequence (CDS) from alignment at sc0000363:83011..84983 >TCONS_00020720 ID=TCONS_00020720|Name=TCONS_00020720|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000363:83011..84983 (Clytia hemisphaerica)
ATGCGCTGTCTAAGTGACAAACTGATGCACGCTTTCTTCAATATCTCAAC
ACAAGAGCCACATGATGAACATCTAGCGCTTGTAGCGCATCGAAAATCAT
GGACACATCAACAAAATTTACAGCGACCATTTCGAATCATAATTTCAGTC
TTTCTTTTAATCACGAATTCGTTAATTATTATTGGGATACGAAAAACGAG
CAGCGTGATTTCTATGCCAAGACGTTTGTTTATCTATTCGTCCTGTGTTG
GAATCTGCACCAGTGCGATATCGCCAGTCAACTCCTGTATCGGGCTGTTC
ACAAAACATTGTTTAAACGAATCTATCACTGACTCAATCTTAATATTCCT
ATTAACATTCGATTTTTCCATTCTACTCGTAATTGGTATAGTGCGCTATA
TGTGTTTAAGTGTTccgttaaaaaaaccgaatccGCGCTTCATATATACC
ATGTTGGTTGTTGGGCTTGGTATCTCCTTAGCAACCGGagctacattttt
ttatctgtatcaTGGAACTTTCTCGTCCTTCTATTATCGCATACACTGGC
TTTCTTTAGGGATATTTCTATCTTTATGCATGTTATGTTGTGTAATGCTC
ATGGCTATACTATGGTATACCCTACGTTACAAAATACAATCGTTTCCCGA
AAATCAAGCGCATTTAAATCGGAACCGAAAAGCAGTAAAACGGTTATTGC
TGCTAAATTTTCTGTATGTTTGTTTTAACGTACCAATGTGTAATATGTGT
TTTAGCCTCGGTAGCTTGACGAATTATCCAACCCAAAGTGAATTATCGAG
AAAATTGTTAACTTTTAGTGCGTTTTATTCGATTTGTATTGCGTACAGTG
GTTTTAATTCGTTGGTGTATATCATATGGGACGATAAGATATTAGCGTTT
ATCAAGAAACAGCTGACTGTTTGTTGTAGGAAATGTTTTACGAGACATTC
CGTTCAAACGCCACCAGAAAATGGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020720-exon-sc0000363-1491911889:83011..84983 | TCONS_00020720-exon-sc0000363-1491911889:83011..84983 | Clytia hemisphaerica | exon |
| TCONS_00020720-exon-sc0000363-1510915933:83011..84983 | TCONS_00020720-exon-sc0000363-1510915933:83011..84983 | Clytia hemisphaerica | exon |
| TCONS_00020720-exon-sc0000363-1575043694:83011..84983 | TCONS_00020720-exon-sc0000363-1575043694:83011..84983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000363 | supercontig | sc0000363:83011..84983 . |
Blast
The following BLAST results are available for this feature:
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