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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020611 ID=TCONS_00020611|Name=TCONS_00020611|organism=Clytia hemisphaerica|type=transcript|length=2027bpRun BLAST on NCBI protein sequence of TCONS_00020611-protein >TCONS_00020611-protein ID=TCONS_00020611-protein|Name=TCONS_00020611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp QHHQKHPFFISPKSRAAKLFGVVHFAGPVYYNTVGILEKNRDTFNADLNDRun BLAST on NCBI transcript from alignment at sc0000359:192906..201497+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020611 ID=TCONS_00020611|Name=TCONS_00020611|organism=Clytia hemisphaerica|type=transcript|length=8592bp|location=Sequence derived from alignment at sc0000359:192906..201497+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000359:192906..201497+ >TCONS_00020611 ID=TCONS_00020611|Name=TCONS_00020611|organism=Clytia hemisphaerica|type=CDS|length=22275bp|location=Sequence derived from alignment at sc0000359:192906..201497+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020611 vs. Swiss-Prot (Human)
Match: MYO7A (Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2) HSP 1 Score: 481.1 bits (1237), Expect = 1.897e-149 Identity = 297/682 (43.55%), Postives = 418/682 (61.29%), Query Frame = 1
Query: 4 HHQKHPFFISPKSRAAKLFGVVHFAGPVYYNTVGILEKNRDTFNADLNDLIGKSKCQFLLHLFEKELKMGDNTRKRSPTLGSQFKKSLDLLMLTLNQCHPFFIRCLKPNDFKRPMMFDRELCTRQLRYSGMMETIRIRRGGYPIRHSFQAFVDRYHMLVRGLDGAMR-SKAKEACHLIASHAL-QGSDWQLGHTKVFLKDAQDQDLEIKRDRVVTAGVVLIQKTFRGHKHRKHFTKLRSSTVTLQKHWRAFAAKRRYKRMMHGFERLQAVVRSRQLHASYGEMRSRVMSFQQLCRGYLARREYKIKLGAIITIQAGFRMVLAKSEKERRRKEYLIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQERVVILQRQMEQDEQKKRQELEHKKDVINQAXXXXXXXXXXXXXXXXXXXQIFGFLPGNSESTGNSQPTKVPKAFGDLTVAREQYILS--EGSTELPGETFEDLKEFTFEKFAAMXPGETFEDLKEFTFEKFAAMYFQGQNTPVFINHKLDRPLLYHEEQTDNMAALAVWVTILRFMGEMQDPK----MGKEFDNTPIMNKIYDTIGRNGTQRGSLSNLSMNNDSPRQQHQPGNNTGKRDTLRRKITSMTLKKKSKITKEVASRLAENGDGGGVGMDQDNTIDSMAALKPEDRPTSYLDKLHFIIGHAIVRPNL 2025
H+ + +I PK+ FG+ HFAG VYY T G LEKNRDT + D+ L+ S+ +F+ +F+ ++ MG TRKRSPTL SQFK+SL+LLM TL C PFF+RC+KPN+FK+PM+FDR LC RQLRYSGMMETIRIRR GYPIR+SF FV+RY +L+ G+ A + + C +A L DWQ+G TK+FLKD D LE++RD+ +T V+L+QK RG K R +F KL+++ +Q+HWR ++ Y M GF RLQA+ RSR+LH Y R R++ FQ CR YL R+ ++ +L A++T+QA R ++A+ +R R EYL LEAEK+R EE +LRK++ AKKA E AE+K QER+ L R+ + E K+++ KK+++ Q R + V+ S++VD++FGFL + G Q + P F DL R + + + + LP E EDL E+ F KFAA YFQG T + L +PLLYH+++ D +AALAVW+TILRFMG++ +PK M + P+M KIY+T+G+ +R L L ++ + Q K+ ++R K+ +TLKKKSK+T+EV RL D ++T+ + L EDRPTS L+KLHFIIG+ I+RP L
Sbjct: 531 QHKLNANYIPPKNNHETQFGINHFAGIVYYETQGFLEKNRDTLHGDIIQLVHSSRNKFIKQIFQADVAMGAETRKRSPTLSSQFKRSLELLMRTLGACQPFFVRCIKPNEFKKPMLFDRHLCVRQLRYSGMMETIRIRRAGYPIRYSFVEFVERYRVLLPGVKPAYKQGDLRGTCQRMAEAVLGTHDDWQIGKTKIFLKDHHDMLLEVERDKAITDRVILLQKVIRGFKDRSNFLKLKNAATLIQRHWRGHNCRKNYGLMRLGFLRLQALHRSRKLHQQYRLARQRIIQFQARCRAYLVRKAFRHRLWAVLTVQAYARGMIARRLHQRLRAEYLWRLEAEKMRLAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAERELKEKEAARRKKELLEQ----MERARHEPVNHSDMVDKMFGFLGTSGGLPG--QEGQAPSGFEDLERGRREMVEEDLDAALPLPDEDEEDL--------------------SEYKFAKFAATYFQGTTTHSYTRRPLKQPLLYHDDEGDQLAALAVWITILRFMGDLPEPKYHTAMSDGSEKIPVMTKIYETLGKKTYKR-ELQALQGEGEAQLPEGQ------KKSSVRHKLVHLTLKKKSKLTEEVTKRL----------HDGESTVQGNSML--EDRPTSNLEKLHFIIGNGILRPAL 1167 The following BLAST results are available for this feature:
BLAST of TCONS_00020611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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