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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020608 ID=TCONS_00020608|Name=TCONS_00020608|organism=Clytia hemisphaerica|type=transcript|length=1859bpRun BLAST on NCBI protein sequence of TCONS_00020608-protein >TCONS_00020608-protein ID=TCONS_00020608-protein|Name=TCONS_00020608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp MKNIEYVAILFNLLLSYYVDGKVLIFNNVSSLTGMYRDAQADFGREIPQTRun BLAST on NCBI transcript from alignment at sc0000359:169212..178149+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020608 ID=TCONS_00020608|Name=TCONS_00020608|organism=Clytia hemisphaerica|type=transcript|length=8938bp|location=Sequence derived from alignment at sc0000359:169212..178149+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000359:169212..178149+ >TCONS_00020608 ID=TCONS_00020608|Name=TCONS_00020608|organism=Clytia hemisphaerica|type=CDS|length=10260bp|location=Sequence derived from alignment at sc0000359:169212..178149+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020608 vs. Swiss-Prot (Human)
Match: RNF13 (E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.140e-43 Identity = 103/270 (38.15%), Postives = 154/270 (57.04%), Query Frame = 2
Query: 161 LFNLLLSYYVDGKVLIFNNVSSLTGMYRDAQADFGREIPQTGIVGLLDLAKPLNACTPLKNSFPYRQYVYGNIFLLAEESTSQTTCSYEXXXXXXXXXXXXXIIVYRRNGYEDLVTMDGEGPAIV------SVMVTRDAGDSLKQSL-YPTRSRIKITAEIELPFQLYLIPFVVVISICFFFMLLFSLGXXXXXXXXXXXXXLSPANLKKIPTKKYTKEDDYDCCAICIEDYEENDKIRILPCNHAYHCKCVDPWLTSGKKVCPVCKQSV 949
LF L V+ +L +N + + + D A FG +P G+ G L +KP NAC P+ P + G +L + C+++ + NAQ AGY A IV+ + +DL++M ++ SV + + +SLK Y + + E LP + YLIPF++++ IC +++F + ++ + R R RR+RL LKK+P K+ K D+YD CAIC+++YE+ DK+RILPC+HAYHCKCVDPWLT KK CPVCKQ V
Sbjct: 23 LFAFLNLLPVEADILAYN-FENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPP-PVKDNSSGTFIVL----IRRLDCNFDIKVLNAQRAGYKAAIVHNVDS-DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285 The following BLAST results are available for this feature:
BLAST of TCONS_00020608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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