TCONS_00020601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020601
Unique NameTCONS_00020601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020601 ID=TCONS_00020601|Name=TCONS_00020601|organism=Clytia hemisphaerica|type=transcript|length=2061bp
TGAAGAGTATCATCATCGGCGAAGTTACAGAGCCGATGTCACCGGACGAA
TTGAAGCAAGTGTGTAAGAAATACCGACAGAAGAAGACTGGTGAAGGTGG
TGGAGGAGCAATTGATGGAGATCCTATCAACTATGAACTCGATGAGACGG
GCGATGAAGTGAACGAAGATGATCTAGTCTCCACAAATGGATCAACTGAA
CAGCTTAATAAATTGGATCCTGATGAGGGTGCATCAGACATCAACAATCA
CAGTAGCGGTGCAAATTCATACAATGTCAGCACGCATGCGTCAGATGTTG
CAGCAGATTTGCCTTCAGAAGATGCCGAGCGGCACCCCGTTATACCAACA
GAACAGACGAACGGTGAAACAGGTGCGGAAGAAACGCTCATCGGAACCAT
CCCTTCACCTACGGAACCATCCTTTGAAGCAACGGAAGATGGCCGACACT
CACCCAAAAAGACGTCGTCCGTCAGTAATTTCTTAAACGGCAATATGGGG
CAGGATGAGGCGCGAGAGAAAATCAAGAACGCCTTCAAACATGGCATACC
AAACTTGGGAACACGCTCTTTGAGCAAAGCGTCCGATTTGTTCCGTAAAA
AGAAGAAAGGTAAAAACCGGTCGCATCGCCATCAACATTCCGTCCACTTG
ACTGTTCCAAATGATGGTGGGGAAACAACCACCGACTTTGAGGAAGGAGA
TTCAGACGCTTCCACAGACAACCGACTGGATGAAGACATACTTTGCCCAT
GTCACGATTCACACACAGGGACGGAATACACGAACGAGGAGTTCGACATG
GACGTGGACACACTTTATACTCATTTATTTGCACAAGATTCTGAACTCAT
GAAGCGTGTCTTCGAAGAGAGAAAACATGAAAATTGGAGGTACACGGCAC
TTGAAGACGCAGGGGATCATCAGACACAAACATTAACATACACACTTAAC
CTCAACTATAGTATCGGCCCCAAAACGTCGGAAACCGTCTCTAAGATGGT
GTTTCCAAAAGACAACAAACCAGGATCCTATTACGTCATCACAACAGAAA
ACCGCAGTTACGGTGTCCCGTATTCCGACAGTTTCCACGCATCTGTCCGT
TATTGCATCACGCGGGCCGTCGGTAATCGTTCACGGCTAAAggtTCACGG
TGACATCGTATATACGAAGAGAGTTTTCGGTCTCGTCAAAAACATGATTT
CACGCAATGGGGACGAAGCTATGAGAAGCTATTATGTTTATCTTGCTGAA
GTTCTAAAAACCGAATCGGAATCGACGCCCATCGCAACAAATCCAATCGG
AATCGACCGACAGAAGCGCAAAtcgaaaaagaaagttttgacgAAGAAAG
TTTCGAAAGAACCTGGCAAAAATATCGAATCGCAACGAAAGTCATCTTTA
CATACACCCAAACCGCCCATTCCCGCCTCTCAacaagaaaataataacat
attCACACAAAGCGCTCTTTCATCCACGGCACTCATCACGCTTAGTGTTA
TtATCTTCTTATTGCTTGGGACGAACCTTTACATTTTACGACGATTGGGA
TCCTTAGAGGGAAACATGGTCGTCAGAAGCAGGGGCTGGACCCCAAAATG
TGACACTGTTGCATGCACCTCTGAAAAAGATTCTTGTGTCCTGGTTTACT
CGAATGGTGATGATGATAAAAAAGTATTCGTACCCTACACCCATGACTAT
TGAACTGGTATCTGACTTGAATCTTTGTAGTGTCAGTGTGTTTTTAAATG
TCGAATCTTCAACACTTTACCTATCACCGTGGATTCATGACTGTTGGTTT
GAATCTGAAGCTGAAGTCGACCGACGGGACAAACAAGACCTTGCGTTTGA
TCTCGATCCTCTTGAAAGACCACTCAAACGGGACTGGTGGCTGACATTCC
TGGAATGCATATCCTTTCTTTGACATTGTGGAAAGGATTGGGAGACAACG
TCAGAGACTTTGcaagatttttgatatttcagATCCGGGCATGAAGATAT
GGTCTGATTAATATGGATTGATATTTTAGATCCTTGTATCTACCGCTTTT
TCGTTTCCTTG
Run BLAST on NCBI

transcript from alignment at sc0000359:136037..147229+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020601 ID=TCONS_00020601|Name=TCONS_00020601|organism=Clytia hemisphaerica|type=transcript|length=11193bp|location=Sequence derived from alignment at sc0000359:136037..147229+ (Clytia hemisphaerica)
TGAAGAGTATCATCATCGGCGAAGTTACAGAGGtcatcttcatttacaaa
ataaaatgtatTGTATGAAAAAGCttcatgaatttctttttcacatcAGG
TTATGATTTGTTtgtaaaacattttgttttccaAAACTTCACATATGCTG
TATAATGTtttaaacaaatgaaacaaaatgaaacaaaatgaaaattgtat
AGAAGCTCCAAAGAAAGTTGAGTGTCTTGTTCTCTGTAAATGTTTTTACT
GTGGTTGTGTCCACATGGTTGATATCAAGGCTATGGATTATGTTGACCTT
GATGTGAGTGACTTGTTAGGCTTTGACCGTGCTCTCATGAACCTTTAAAG
TGAACCTTGCGAAAtgagaaaaacactgttttcaaTCATATTGTATTTGT
AAGCATCCAGCTTTTTAGCTCCTTAAGATTAATTCGCTAACTTTTGCTGA
TGTTGGTAAAAACCTTGCGCTGTACTATGTACGGATGTATTTCACTCGTC
CAGTGAGAAAaacgaccctgccgacgcaTCTGACTGTCTGGTGTTCGTCC
GATGTGCTACAATACACAAATTCTTAACACCGGACTTTTTCTTTAGCGTT
TTGTCTcgcaccggacgcaccggaccgATTAACGCCTGTCCGGTGTTTGG
ATTGTCTAGTGGTTAAAAGTTTTATCACTCGGCACCGGACATTCCGCGTC
GTTGGGAAAACCTTAACTCTGTCCTCAAAGAAAAGGAACCGTTTGCCGTC
ATTCAACTCAATTTACTTTACTCTCTTTTCTCTCTCTCTTCACAGCCGAT
GTCACCGGACGAATTGAAGCAAGTGTGTAAGAAATACCGACAGAAGAAGA
CTGGTGAAGGTGGTGGAGGAGCAATTGATGGAGATCCTATCAACTATGAA
CTCGATGAGACGGGCGATGAAGTGAACGAAGATGATCTAGTCTCCACAAA
TGGATCAACTGAACAGCTTAATAAATTGGTGAGTTCGTTGTTCTCAtggt
atgcaccattgcaatgtcttccacggacccaaaacctgattggttgaaag
gcgccgtggtatagtggtcattgaccttggttgctgcacaggcgactgaa
gCTCGATTCCCACACGGTGTtgtggttcacttggcaagtgaatgaacctt
cgtcCGGGTCAATCCATGCCATGTGAAGTTGGCTAGTCAGTTCagggtgc
tgacggggcgctaattgaaagcgtctatgactgattttacatcacttaca
atcaatcagctgttggatccgtgatgtaatgtcagaagtcattgcagtga
tgcatatcatgatttagcgagtttatgtactGATTGATGTCGAAGACTAC
GGTAAGTGAAGTTGACGCAAAAAAGTCAATAGTTGATGTACAGccctata
tcgcctttgctcacctaaacagacgacggtattttagtgtttttaccGTT
Gttgagcaaagtggacggtgattttagcgacatgtcaactttgccgtata
ccgtctccttcgatttatctcgaatacaaaAACTCGCTATTGGCTCCGAT
TGGGAGGTTTTTGTCGGCTGATATTTATTCTTTAAAAATTCCAAGCACAA
ATGAGGACAGGTATAAAATCTGTTCATGTCAGTTTATGTTGAAAGCTGGG
GAAGCCATTTCATCGAGTTGGACTCGATCACTTTCTTTCAGGATCCTGAT
GAGGGTGCATCAGACATCAACAATCACAGTAGCGGTGCAAATTCATACAA
TGTCAGCACGCATGCGTCAGATGTTGCAGCAGATTTGCCTTCAGAAGATG
CCGAGCGGCACCCCGTTATACCAACAGAACAGACGAACGGTGAAACAGGT
GCGGAAGAAACGCTCATCGGAACCATCCCTTCACCTACGGAACCATCCTT
TGAAGCAACGGAAGATGGCCGACACTCACCCAAAAAGACGTCGTCCGTCA
GTAATTTCTTAAACGGCAATATGGGGCAGGATGAGGCGCGAGAGAAAATC
AAGAACGCCTTCAAACATGGCATACCAAACTTGGGAACACGCTCTTTGAG
CAAAGCGTCCGATTTGTTCCGTAAAAAGAAGAAAGGTAAAAACCGGTCGC
ATCGCCATCAACATTCCGTCCACTTGACTGTTCCAAATGATGGTGGGGAA
ACAACCACCGACTTTGAGGAAGGAGATTCAGACGCTTCCACAGACAACCG
ACTGGATGAAGGTCAGTTAACAATCTGTTACTGGGTTGAGTTTAATCGAC
TAACAATTTGCATTTCTCTGATCTGTAGCGTTATAGttaggctgcgcgca
tccccagaatttattttgttataggggatgcgtatcgtgtatgaaattct
cgtccgagaattacctcaaatttggggtaaccaagatttgcataaattta
cataatttcgtcacatccaatcaaagaaagaaaaaaatgaagtcattgtg
ctgttgtttttataattatcaattttcattcattgaacaaagaaaaaaag
aagtcattgtattgctatgacgcataatcaaaaaagaaaaaagaaaagac
gggNACACCCCGTTATACCAACAGAACAGACGAACGGTGAAACAGGCGCG
GAAGAAACGCTCATCGGAACTATCCCTTCACCTACGGAACCATCCTTTGA
AGCAACGGAAGATGGCCGACACTCACCCAAAAAGACGTCGTCCGTCAGTA
ATTTCTTAAACGGNAAAGTtgggacagaaatattttagacgatacgcatc
ccctatatcaaatcatatcagaggggatgcgtgcagcctataTTATAGTA
GGCCTGTGTAAGAGTCACCATTCGAAACCCTTTCGGTATAGCCTCTTGTA
AGTCTATAATGGAGAAttcaaagtaatttttgtttatgaGACTTACCACA
GTCTATTGACCTTTTATCTATGATCGTTGTATTTGCTTTATAGACATACT
TTGCCCATGTCACGATTCACACACAGGGACGGAATACACGAACGAGGTGA
GCCTCCTTCTCTATGTTCCGCCATTTACATACAGACAACTTTTCAACTCG
TGTCAATATTAATGCTGTCATATCGTGTCTGAAATCGAGAGGTTTATGTC
AGACTACGTTTTCCGACAGGGAtgcaaccattgagtttaaagcccaaagg
gctagagtagaatatctaacctttcccaggcaagaaaaggtgaatccact
tatttcccatccagaacgcaatcatgacgacggattgtatgtagcagttc
tttgtttttgaggactacattttttgaaatctagcgatagattctACTtt
taaaaaccacgcgcgggcgttctggaagAGAAATAAGTGGCATTTCCCAT
CTAGGAGTCTCGAGGATAGCCCTTCGGACATGGAAGTCAATGGACGCAAC
CATcgtaaaatataattttctcaCATGAGTTTAAAGGGCAAATTTCCATT
GTAAGACGAACGCAACCTACTTTTTCTTCAACCAGGAGTTCGACATGGAC
GTGGACACACTTTATACTCATTTATTTGCACAAGATTCTGAACTCATGAA
GCGTGTCTTCGAAGAGAGAAAACATGAAAGTTAGTATTCCTCACTTTTTT
TCACCTAACGAAGTGTTTGCTACTTTTGGAGAAGGAATTTTAGAGAAACT
AAAAAaatccttgtttttttttatataattttgcaGGAGCCAGTCAGCCA
AAATAGAAAAACGAAGCGGCTGCTTATGTtgaaattttcgtcatctttac
atacgtgacttcatcagcatgtagctcaacaaaaaatcttttgataagGG
AAGCTTgttttcactgaagattgctATCCATCCTGAatggcatgaaactt
tgaaTATGAAATTAACTTgaatcgttttctttactcataCTGATAAAGGA
AGCTTGAGATTTAacgaaaaaagtttgttataaTGACCACTCTTGAaatt
aaaggccggtctccacttgtgcGCGCTTTGATCGCactagcgagattatg
tatctggaattctctacggctacggctaaagtggcgagggaaatggcgag
taaggcaagtaatggcgggtgtaagcaagttcgatatttgacgtacgaca
tgatgtcgactttgcttatacggtgttttggtgtttttcccgtacagagc
aaagtagacaacgacatgtcgcctttggtgacgacccgtacgctcagccc
cgcaaccgtagccgtagaatatctccgatacataatctcgctactTTTTC
GAACTttcacgctattggtcaaaagaaaaatgaagcaactccattggtgc
aatctgacgtaacggttgaaaaaagttgaaaatgtgttcaactttttttc
gagcgcgcgctacatttttatgacgtaatcttttttccaagcaaaaagga
ttgaagctaaAAGGTACGATCGCAGCGTGcgcaagtggaaaccggcctta
ACATTGATTAATTGTTTCAGATTGGAGGTACACGGCACTTGAAGACGCAG
GGGATCATCAGACACAAACATTAACATACACACTTAACCTCAACTATAGT
ATCGGCCCCAAAACGTCGGAAACCGTCTCTAAGATGGTGAGAACCTCTTT
CTTTTAAATATAGAAgaaatattaataaaataaaagtaaacgTTATTCAG
TTATAACTAAAGGTTAGGCGCGACTGATGAGAAATTGATAAAGTTTCAAG
TTGATTATAGCCCAGTAGTCACCAACTTAACCAAGGAACATATATTAATT
AAGTACAAGTAAACGTTATTCAGTTATAACTAAAGGTTAGGGGAGACTGA
TGAGAAATTGACAAATTTTCAAGTTGATTATAGCCCAGTAGTCACCAACT
TAACCAAGGAACACATATTAATTAAATACAAGTAAACGTTATTCAGTTAT
AACTAAAGGTTAGAGGCGACTGATGAGAAATTGATAAAGTTTCAAGTTGA
TTATAGCCCAGTAGTCACCAACTTAACCAAGGAACATATATTAATTTTAA
ATACAAATAACTTGATAAAGTCTCAAGTTGATTATAGCCTAGTTGTCATA
AGTGACATATTCAGTTATAAGTAAAGGTGAGAGGTGACATGGGATAAGAA
TGAAGAGAAATTGATTTGGTGGTACTCATCTCGTGCTACGCTTGCGACGA
GCTATATGCTCTACCACGTTTTTCGAGTGCCATCACTAAATTCCCATCCG
TCTCATTCTAGAGCTGACAAGTCCATCGTGTTTCATTTCTGACTGCCAAT
CAatggattcgaatgttttgaaattaaaacgctcaaaatcctaacataaa
atataaaacaacCTTTCAGGGGAAATTTACATAGCTCTTCTAGTGaataa
aggaaaatgaaatttgtGGCTTGGATAAACCTGAAGATGTGTGATCAGAT
GATAAATGATCAATTCTTCCGCACATTTCAGTAACAAatcattttattga
aaagttcaTTCTCCTCTTCTTTCTCATATTTTTAGGTGTTTCCAAAAGAC
AACAAACCAGGATCCTATTACGTCATCACAACAGAAAACCGCAGTTACGG
TGTCCCGTATTCCGACAGTTTCCACGCATCTGTCCGTTATTGCATCACGC
GGGCCGTCGGTAATCGTTCACGGCTAAAGTAAGTTTAATAGCGGGCATTT
TGATCTTGCTCataatgaaaaatattattacaaTTTTGATGATTACGTCA
ATCATTTTGAAAAGAGTTTGCCAATGACGACTTTTATTCATGATTACATA
tacttattttttgttttcagggtTCACGGTGACATCGTATATACGAAGAG
AGTTTTCGGTCTCGTCAAAAGTAAGCATCGTTTCATTCTTTTTACATAGT
CATCGAACGTAGTGTCTCTCATAGAACTCAACCAGAGTTGCATTTACCAA
TGTCCACCAACGTTAATTACCACACCACCTTGTAGAAAGATTCAAGAAAG
GGGGTGTTCCTGATGACTTTGTTTAGCTGGCTGAACTTAATGTAGGTTAA
GGTTGAGGCGTTTCATAAACGGACGAATTATGTTTTGTTGTTATGCTCAG
ACCAATATCGCTATTTCTAGCTTTTCTTTCACTTTCCTCTTTTGCTTTCA
GACATGATTTCACGCAATGGGGACGAAGCTATGAGAAGCTATTATGTTTA
TCTTGGTAAGTGAGTCCactgtttttattttcgttGAAATCTCAGGAAGA
GCGTCTAAGCAGCCATTCGTTGTTGTTCAAAGTCTTATCGTGTATATTGG
TAGAACTGTAAGATACTTGAGATATATACAAGAGATAATTTCATATTAGA
GTGACGTTGGCTTGTTTAGATCCTAGATGTTGATTTGAATCCTCAAGATT
GCCACCAGGTCAAGGTGATATAATAGTGAAATTTCTATTATGCGCCTTTT
CATAAAACTGGATTGTTACTTGTGTTAGTagcataaaaaaatttttcggg
cCGCCAAAGATgttaaattttggttgaatttaACTCGCACTTCACACGCg
ctaaaatataaacatttaCATTTTCAGCTGAAGTTCTAAAAACCGAATCG
GAATCGACGCCCATCGCAACAAATCCAATCGGAATCGACCGACAGAAGCG
CAAAtcgaaaaagaaagttttgacgAAGAAAGTTTCGAAAGAACCTGGCA
AAAATATCGAATCGCAACGAAAGTCATCTTTACGTAAGTCGTTGGAGCGT
TCTAAGAACTGTTTCATGTATAAACAACGtggctttttaagctttttagt
tccttgtaaattcatttCTATTCGTTTAAGCCTAAGGATAGTTGAATGAt
tctcaaaaatttccaaataagcCAACAATGCAAACCTCccataatagacc
ttatcggagttttagatttttctaaaaaagcgatgcattgtgggattgtt
tccgAAGTCTttcaatagaattccctcgaggaaaatttctattgtaatac
tcctgagacaatcccacaatgcaaaaaatcaaaaactccgataagatcta
ttgggctattccagaaaaaatttgtaccccctatgttgcgGAGGTCTTTT
TCGGGAAAAGTGACACCccggattttcaaattttcaagatccccctggat
tttttctcattttttagactaccctggattttacctCCTCTGCAGTCCCA
CAGCCCCCTTGGATTTTTCTAACACTAGACACCTTTCTTCTCAATTCTTT
AGActaccctggattttacctCCTCTGCAGTCCCACAGCCCCCTTGGATT
TTTCTAACACTAGACACCTTTCTTCTCAATTCTTTAGActaccctggatt
ttacctCCTCAACATATAATTCTGCAGTCCCACAATCAGACTAGGATCTt
ggattttcaacctttttctaCTGACCATGCTGGATTTTTGAgtttatttt
actgaccaccctggattttttacctcgttttattaaccaccctggatttt
cgacctcatTTTGCTAACAACCCTGGATTTTCTCACTCAGAAAACTGAAC
CGCtctgaatttttttattctaaaaaacTTGACTACCCTGGATTTTTCCC
CTTGAAAGACCGGACTACCCTTGATTTTCCTCCTCAACATATAGTAACCA
CCCTagatttttacactcgaaaaaccggaccaccctggatttttcctCCT
CAATATATGGTAACCACTTTATTTTCCataccaccctggacgtcacacct
tctcaacatagggggtacagattTCTGGAACAGCCCATTCAATATCTCTA
ATAATATGCTTTTTTGAATTGTTCAAATTGGTTtaattcttgaaaatttg
gCGTGTCTTCTAACCTCATCCATTTTTCTTGTAGATACACCCAAACCGCC
CATTCCCGCCTCTCAacaagaaaataataacatattCACACAAAGGTAAG
ACCCAGACGTAAATTTACAGAAATAGACTTCCttgtaaaattattttact
tCAGGTTGTgtatctgaaatgaaaaaactacTTTTTTCGTGGAATGCTTT
TATGCTTGCGACCCAGTAAAAGCCCGATTGGTGATCTTGCcacattttga
atttctttttccctTGAACCATtcgactgactgactgactgactgactga
ctgactgactgatgAACTGGATGTATTGTTCATAATGGGTATGTTTGATG
AGTAGTCAGCCTCGTTCTAGTTTAAAATTTGTACTCAAAAGAAGACTCCG
TGcgaatgtttttctttaattctttttgatttttttgttttcttttacag
CGCTCTTTCATCCACGGCACTCATCACGCTTAGTGTTATGTAAGTACTCT
CTTATAATAACCGATGGTGCTCTTGTTtacacgcttttctttttataaga
acaagctaatttttggacctaccccggtggggtggaggtcctataaatta
acctgtgttcgtccgtccgtccgtccgttcgttcgtctgttaccaacttt
tctcaggattgaatcataggaatcttttgattattggtacaaaggtgcaa
aatggtagtggccaaaatgtgacggagcccgattttcgaaaaaaaatttt
tgggcaaatttgggccaataaacggctaaaaaacgggttttttggacttt
gtgaaaaattggatcattaattttttctgattttttgcatgaaagtaggc
taacatcattggtaaaagatgactcaagcagacttttgcaaaaaaatttt
gttggctcaaaaaacgcatgtttatctataagaatcgctattaattagca
tacatcaatgttcttagtcaaattactcaatttttttatgagattgatgc
tttttttgctcaggagggcttacttttgaagaatttgtgtgtttagacat
gaaattttggttgcttggcgtgtttttatagaaaaactggccaaattcga
tatttttttataagcacattatcaattacttaggtattagcttttctgga
gattggttctttcattctttatgattttttgcacaaagatgcataactat
aaaccctcgaatgtgacggagcccgattttcgaaagaaaatgtttatggg
caaatttaggccaaaaaatggctaaaaaaaacgggttttttggatttgga
tcattaattttttcagattttttgcatgaaaataggtaaaagatggctca
agcagattttggcaaaaagattttgttggctcaaaaaacgcatgtttatc
tataagaatcactattaataagcatacatcaatgttcttagtcaaattac
tcaattctttgatgagatagatgtttttttgctcacgaagtcttgaatat
gaaagaatattttacgatcatgaaattttggtctctaaacgtttttttta
taagaaacaaacaactaattttaatagatcgtcactatttgtgttctgaa
tgattttttgacggtcatgctcacgtagatatcaattatatgtgtgttaa
atgcataaccaggtaggtccataaaagtatcacttgtttagcTGAGGCCC
GGCTTtattattttgtgatttttcttacCTTATTCACTTATTGACTAAAA
AGAGGTTTTAAATTGGCATTTTCTAAGTCATTTTTAAAATCTGACGTTTG
GATTGTTCTTTGTTTGTTCTTGAGTTGGACCCAATCGAgctttgtgttct
tataaaattgttctttataAAGGAGCGTGTACACgtcttttaataagaac
aataagaacatccaaaatttttgaagcctaaaaatattcttatcattttc
ttattttcatcattttgtgagtaaCCTTGTTCACTTTCTATAAGAAATCG
Ggcgttttagagtctgcaaagccttaaaatgttctaaacctgttcttaaa
atttgagctatcaagccttatgtttttatatattttctcctgataaaaaa
atgtgtatttgtTGAGAAATAGCGGATGAAGTGACGCAAAAAATGTGAAG
TTTATTTNACGTGTATTTGTTGAGAACTAGCGGATGAAGTGACGCAAAAA
ATGTGAAGTTTATTTGTTGTAGAGAGGTTTACTGTgttaacctttttgtt
tatgtttattttttagtATCTTCTTATTGCTTGGGACGAACCTTTACATT
TTACGACGATTGGGATCCTTAGAGGGAAACATGGTCGTCAGAAGCAGGGG
CTGGACCCCAAAGTAAGTCACACCCTTAACATTTCATTGTTATATAACGA
GGTCTGTTTTCCCCCTCATTCTCCGCTTGTGGTAGCGTGCTGAGTCATTG
GAGTTATTGTGTGTATGTCATTAAATAAAGATTGttagaaaaaaagagag
aaagttTGCCGCTTGTCACATTGCGACATCTTCTCTTGCAACTTGATACA
ATCAGTTCATTTTTGTTTCCTGGGTCAGTAAGCCTTTTCCTTCAGCAAAA
AACACAGGCATACATTAGAGCTTCGATGGAACTTTCTTTTCTTAAtaata
cagttgagtctccatacAGTAACTCGAATACGCACGGGGACATAAATTTG
CTCGaattaaggaaattttgagtgACGAAATAAGGTTCATTAGGCagtgt
taactgaagggacgagaaaacctGTTTGagttaagaagacattcgagtCT
CTACTGTATGTGATAAGACAGATGTCGAACCATCTACGACTTCACTTACA
ATAAGTTCCCTCTAGTCAATTGGAATTAGAATAATTAGAACTTCATTTAG
ACTActattgtttttattcaaactgGCAGATGTGACACTGTTGCATGCAC
CTCTGAAAAAGATTCTTGTGTCCTGGTTTACTCGAATGGTGATGATGATA
AAAAAGTATTCGTACCCTACACCCATGACTATTGAACTGGTATCTGACTT
GAATCTTTGTAGTGTCAGTGTGTTTTTAAATGTCGAATCTTCAACACTTT
ACCTATCACCGTGGATTCATGACTGTTGGTTTGAATCTGAAGCTGAAGTC
GACCGACGGGACAAACAAGACCTTGCGTTTGATCTCGATCCTCTTGAAAG
ACCACTCAAACGGGACTGGTGGCTGACATTCCTGGAATGCATATCCTTTC
TTTGACATTGTGGAAAGGATTGGGAGACAACGTCAGAGACTTTGcaagat
ttttgatatttcagATCCGGGCATGAAGATATGGTCTGATTAATATGGAT
TGATATTTTAGATCCTTGTATCTACCGCTTTTTCGTTTCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011569XLOC_011569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020601-exon-sc0000359-1491911889:136037..136068TCONS_00020601-exon-sc0000359-1491911889:136037..136068Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:136037..136068TCONS_00020601-exon-sc0000359-1510915933:136037..136068Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:136037..136068TCONS_00020601-exon-sc0000359-1575043694:136037..136068Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:136832..137014TCONS_00020601-exon-sc0000359-1491911889:136832..137014Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:136832..137014TCONS_00020601-exon-sc0000359-1510915933:136832..137014Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:136832..137014TCONS_00020601-exon-sc0000359-1575043694:136832..137014Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:137728..138247TCONS_00020601-exon-sc0000359-1491911889:137728..138247Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:137728..138247TCONS_00020601-exon-sc0000359-1510915933:137728..138247Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:137728..138247TCONS_00020601-exon-sc0000359-1575043694:137728..138247Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:138980..139032TCONS_00020601-exon-sc0000359-1491911889:138980..139032Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:138980..139032TCONS_00020601-exon-sc0000359-1510915933:138980..139032Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:138980..139032TCONS_00020601-exon-sc0000359-1575043694:138980..139032Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:139522..139615TCONS_00020601-exon-sc0000359-1491911889:139522..139615Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:139522..139615TCONS_00020601-exon-sc0000359-1510915933:139522..139615Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:139522..139615TCONS_00020601-exon-sc0000359-1575043694:139522..139615Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:140507..140622TCONS_00020601-exon-sc0000359-1491911889:140507..140622Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:140507..140622TCONS_00020601-exon-sc0000359-1510915933:140507..140622Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:140507..140622TCONS_00020601-exon-sc0000359-1575043694:140507..140622Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:141522..141664TCONS_00020601-exon-sc0000359-1491911889:141522..141664Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:141522..141664TCONS_00020601-exon-sc0000359-1510915933:141522..141664Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:141522..141664TCONS_00020601-exon-sc0000359-1575043694:141522..141664Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:141807..141856TCONS_00020601-exon-sc0000359-1491911889:141807..141856Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:141807..141856TCONS_00020601-exon-sc0000359-1510915933:141807..141856Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:141807..141856TCONS_00020601-exon-sc0000359-1575043694:141807..141856Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:142138..142191TCONS_00020601-exon-sc0000359-1491911889:142138..142191Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:142138..142191TCONS_00020601-exon-sc0000359-1510915933:142138..142191Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:142138..142191TCONS_00020601-exon-sc0000359-1575043694:142138..142191Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:142564..142719TCONS_00020601-exon-sc0000359-1491911889:142564..142719Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:142564..142719TCONS_00020601-exon-sc0000359-1510915933:142564..142719Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:142564..142719TCONS_00020601-exon-sc0000359-1575043694:142564..142719Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:143871..143931TCONS_00020601-exon-sc0000359-1491911889:143871..143931Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:143871..143931TCONS_00020601-exon-sc0000359-1510915933:143871..143931Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:143871..143931TCONS_00020601-exon-sc0000359-1575043694:143871..143931Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:144287..144325TCONS_00020601-exon-sc0000359-1491911889:144287..144325Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:144287..144325TCONS_00020601-exon-sc0000359-1510915933:144287..144325Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:144287..144325TCONS_00020601-exon-sc0000359-1575043694:144287..144325Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:146103..146198TCONS_00020601-exon-sc0000359-1491911889:146103..146198Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:146103..146198TCONS_00020601-exon-sc0000359-1510915933:146103..146198Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:146103..146198TCONS_00020601-exon-sc0000359-1575043694:146103..146198Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1491911889:146766..147229TCONS_00020601-exon-sc0000359-1491911889:146766..147229Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1510915933:146766..147229TCONS_00020601-exon-sc0000359-1510915933:146766..147229Clytia hemisphaericaexon
TCONS_00020601-exon-sc0000359-1575043694:146766..147229TCONS_00020601-exon-sc0000359-1575043694:146766..147229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:136037..147229 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.70542	4.37112	2.95969	2.18105	1.94979	0.383804	4.88536	6.37037	2.08788	4.94179	3.06944	3.00895	1.04644	0.00213141	1.01572	0.00880456	4.59835	3.08828	0.00556473	1.10035	5.69603	6.72525	2.98616	4.96141	12.6763	7.7371	0.565682	1.31692	2.1798	1.20779
Blast
[Close]
BLAST of TCONS_00020601 vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.491e-16
Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 3 
Query:  729 DEDILCPCHDSHTGTEYTNEEFDMDVDTLYTHLFAQDSELMKRVFEERKHEN-----WRYTALEDAGDHXXXXXXXXXXXXXSIGPKTSETVSKMVFPKDNKPGSYYVITTENRSYGVPYSDSFHASVRYCITRAVGNRSRLKVHGDIVYTKRVFGLVKNMISRNGDEAMRSYYVYL-AEVLKTES 1268
            DE  +   ++  +G +Y NE F+  VD LY  LF  +S   +   E+R+  +     W+    E+ G+     L      N  + PKT+         K ++    YVI  E  ++ VPY D F+   RY +TR   N+SRL+V  ++ Y K+ +GLVK  I +N    +  Y+ +L +E+ KTES
Sbjct:  360 DEGEVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFT-NSPFQRDFMEQRRFSDIIFHPWKK---EENGNQSRVILYTITLTN-PLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSRLRVSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTES 540
The following BLAST results are available for this feature:
BLAST of TCONS_00020601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM1B8.491e-1631.18GRAM domain-containing protein 1B OS=Homo sapiens ... [more]
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