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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020598 ID=TCONS_00020598|Name=TCONS_00020598|organism=Clytia hemisphaerica|type=transcript|length=740bp
CTTattgatatgcaccactggagagtcttctaagaatttttccacccaat
acgtcacttaaaaaatagaaacagTGAATTGAAtggaattttttgaaact
ttgtgaaTAGTGAACAGAGTTGAGTTCCTCTCCTCAAATCCGTTGACCAA
GTGTTATATTGCATTTCCAACTGTAGATGTAGAAATCTGTCCAGTTGAAT
CTAAAACACTCGTTTTATCAGTAAAAAAGGTTTTGGTCATATGATCCAAG
GATTTATTTACATGATTTCAATCCAATGTATATACAAGATGTCACATact
cctgttttttttttcagcacaaaaacaaaacaaacatgaTAAATCAGAAC
ATCTCCATCCAACCATGTTCACCACAGATAGGGTCATCGGAGGAACCGAA
CTATCCTACCAACGCTGCAATGACCAACACTGAGCCTCCACCTTCATCTT
CACTGGAGTCGAGCACTAAAGATTACCTTGCACCCACAACACCTGGACAG
CCGCAACGTCCGTATATTGTGTCACGACAAAAGAAGAGTAGTACAACGAG
TTACAACACGTCGCTTGATACTGATGAAGACTTAGGAGGTGCTCTCGAAA
CGTCAAACGAGTATGAATACCGTTATCAACAAGCAAGTCTGTCGGACAGT
CAGACGCAACGTAACTTGCAAGACCGGCTGCAGATGCTAAGTCCCAATCG
CTTCAAgaagttgaagaagaaaaatagatTAACACAGGTA Run BLAST on NCBI transcript from alignment at sc0000359:122624..128874+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020598 ID=TCONS_00020598|Name=TCONS_00020598|organism=Clytia hemisphaerica|type=transcript|length=6251bp|location=Sequence derived from alignment at sc0000359:122624..128874+ (Clytia hemisphaerica)
CTTattgatatgcaccactggagagtcttctaagaatttttccacccaat
acgtcacttaaaaaatagaaacagTGAATTGAAtggaattttttgaaact
ttgtgaaTAGTGAACAGAGTTGAGTTCCTCTCCTCAAATCCGTTGACCAA
GTGTTATATTGCATTTCCAACTGTAGATGTAGAAATCTGTCCAGTTGAAT
CTAAAACACTCGTTTTATCAGTAAAAAAGGTTTTGGTCATATGATCCAAG
GATTTATTTACATGATTTCAATCCAATGTATATACAAGATGTCACATact
cctgttttttttttcagcacaaaaacaaaacaaacatgaTAAATCAGAAC
ATCTCCATCCAACCATGTTCACCACAGATAGGGTCATCGGAGGAACCGAA
CTATCCTACCAACGCTGCAATGACCAACACTGAGCCTCCACCTTCATCTT
CACTGGAGTCGAGCACTAAAGATTACCTTGCACCCACAACACCTGGTAAA
TATCATCATCTTCTCATTTTAGTGTGCAATCCAATGGGGATATTAACTTT
ACAAGTGATGGTCCCAAGCCAAAATTGTTTGAACACTTTTCAAAAGgtga
tttcaaagaaaaataattgttaGGGCTAAAGAGATCTCAAGGTGTAAGTG
TATTTTGGTGACCAAGAACTCTTTTCAAAAGCTGGTTTTAGAGAAAAATA
CCTCTCCTACAAGGTCATTATCATAAATAAGCTTTGACAACGTCATTAAA
AAAGTATTGGTTCGGCTAAAGAGATCTCAAAGTGTAAGTCTTCAAATAAG
AAACTATTTTTTTTGGTGACCAANTCGGCTAAAGAGATCTCAAGGTGTAA
GTTTTCCAAtaagaaacaattttttttggtgACCAAGTCTGAGCCAAATC
GATGAAAGGGGTTCTCGTTCTACTGAATTTATCTTTTAAACATTTCTCAA
GCTGACTCCAGGCTAAagagaattatttttttaatgagaCATTCTTCTTC
TCTTGATTGAGCCAGGGCTGCACCaatcagtagcgtagacaaggagCACA
acatttgtgtaggagagcagattttgcGCCCTCCTGTCTATGCTACTGCC
AATGAAATAGGTTTTCTATTCAAAGAGAAGTGAACCCACCGATCAAAAAA
ATCTACTATCCAACGATACTCTTTCTTAGTCGCACATTTCTATTTGGACA
GCGATGAAAAATATCCCCTCATACTTCTCATTTTAATCAAAAGTTACTTC
TTCTCTTTGTTATCCAGGACAGCCGCAACGTCCGTATATTGTGTCACGAC
AAAAGAAGAGTAGTACAACGAGTTACAACACGTCGCTTGATACTGATGAA
GACTTAGGAGGTGCTCTCGAAACGTCAAACGAGTATGAATACCGTTATCA
ACAAGCAAGGTNGGGAGGTGCTCTCGAAACTTCAAATGAGTATGAATACC
GTTATCAACAAGCAAGGTTCGTCAATTTCATTTGTCTGCTCAAATCACAA
CCACAAACCTTTCAATGTTTTGCTTTTCTGGCTTAATCTTAAGTATTGAT
ACACCCTTTAGATTATTGAACCAGTTATGTCACAAATATCTCTTTTCAAA
CTCTGGTGTCTAGATGGAGCTCTACTATCAATGACAATTTTGAATTTCAC
GATTGAATAGACAAGTGAACTCATGGTACGGACTAGATATGTATCAGGAC
ATATTTCTATGAGAAGGTTTCACAGACTGCTGTCTATGTCCTTGATTTTC
AGTTCTTGCCAAATCTTGGACGTTATAATTTATAAATGCAGCTGCATGTA
CAAAGTTTATGGAACTAAAGTTTATGTTTCGACttcaaaaattctctttt
tgtcGATAATATTATTTTCCTTTCCCCCTTATTTTCCCTAAAAAGTCTTT
CTGTTTCTCTTTccattcttttaaaatattgaaatcgtTAAATCTAGTTG
TGAGATATCTCTCTTTCtctcttcttctttttattttttatcatttcttc
ttcatcagacatattaatttttagatgttttttttttcgacttcaACTTT
TCACTCGCTCTCACTCTGACTTTTAATAATGTATTTAAGAATTTTGATCA
ATATTCTCTATGTTGGTTTTTTTAAGTCGAGCGAACAAACTTTttagaaa
gaagaagaaaagtgtTTAAGATGAAGTTTTTATAAAGATGGTTCTTTTGC
CTGTTCTTTTTGGATTTGGTTGAGAACTATGGGGCTTGACAGTCTGTTTT
CGTGTGTTAAGATTATctttataaccctgtctcagtgacctgATATGAGA
TAGATAGAGGACCTCGCTTATTTCGGAATTTGATTCACCAAGTTTCTAAA
GTTTTCACATACCTTatcggtcttaattattagtcggccctaattttagt
cacctcatcaaaatttagtcattaagggccgactaataattaagaccgac
taaaaatttgggcaatttctaactttacaagcagatggaacaggaaaaat
gtacgtacgcagaggaaattttttcatagcccttttttgctttatttttt
tacttttacgcttcttatacgcatcaaggaaaagaaaaagtttcttaata
aacatcgAGTTTTATGTATGAAATAAAAGTTCGAACCTAACGATTTGAAT
TCTAacttttcttcaaccgaggggggggTATTCACCTTTCCATTTTCAGC
ATAGTCATTATCAACGTGGAAGTTGTAGaggtttttcaggtttttccAAA
TAGCGACAAgctgccattatggattttggaTTTATGGATTTGTTTCGAAT
CACGAGTTATTGAGTCTTCTTTTAGATAATTAAAagtatttgcaaaaagt
ttgataaaaatcgttcaattttgtttgcaacatttcttttgtcttgagca
tgaaaaatgaaagatgTTTGAGCAAATAGGATTGGCATTTATATTGTGTT
GTGTTAATTGAGTCTTTGAATTTGCTTAGTTTGTGTGACGCTGAACGGGC
CCCGCTAATTTCGCCTcctcaaaattaaaaaagaaattgactatGATATT
TTCAAACTTCATGTATAATTTATACATATAAGTCTTTTTATTTCTCTTCC
TCGAAGGGAAATCTCTTTTCATCGGCCGGATAATCTTTTACTTTATtgta
aatgtaacaaaaaagggaaaatttgaaaatttcagattttgttTGGTCTA
CAGTACTTATTTTCGTTCCTCATTTCTTTGGATCCTCGAACTTTCTTAAG
CAATCAGAATCGCTCCTTATTTTCAAACTGGTAGTCGAAGTTTTACAATT
TTCGTGCAAATTATTAATATCTCGTGCTATAGTAACATGGCTCCGGTATA
TAAAGTTCATTTCGATGCACCCGAGGTCGTCAAGTTCGTGTAAGTTGTTC
TCTTTCAGTCTTTTCTCATCAACCCCCTCGTCAATGTTTTTGCGAAATAG
TTTGGGATTCGCAGAAACTTTGAACTGGAAATTTATATTGTATTTATTCT
AAACAAAAAGGGGGGGGGTCTCGGAACGTGTCGTTTAGTGATGTGGTGGT
TTACCCAAACAACTCAAAAATTCTTTTGGTACCATGTTATATTCGAATAC
TAAAAGGTGGTACCTAAACGAGACAATCTTTAGTACATTGGTACTAGTAT
TGTAACGGCCGGCTCCAAAAATATTGTTAACATAAAGTACGCAAATTTCG
AATATAGTTCCAATAAGAATAAAAGCGAGAAATAGCTTGGAAGTCTAACT
TCGTAATGAGTCAAGAAAATTCTCCTGTCCAACAAACATCAAACACACTG
ACCACCGCCCACGAGGAGGGCGTGAAGCGTTCTCATTCTGATTCCAAGCT
CGTTCTCCCATTGGTGGAAGACAACAAAGAAATTCCGTCGATTAGCAGTA
GTCATTCATATCCCGAGTCCTTTAATATTGAGGAGATAACAACACCAGTA
TCAGAATCACCACAAAATAATGGAGGTAAAAAGAAGCGGATGGAGACATT
CACAAACTTTATGGAGAAAATCCCGCTCAAACGCCCTTCAAATATCTCCC
TCCCTTTAACCACCTCGACACCCGCCCAATCATTGATAATGCTTGGTGAA
ACCAACGGGGCGTCAAGTGGGGCGTCACCTAATGGAGGGAATTTCCCTGA
ATTCCAGATCAACCTACATGCAGCTATTGATGAAGAACCTGTGTAAGTTT
TATGACAATGAAAGCTATCCCTAGTCCCCGCAAGCAAAACGTTCTGTTCA
atcatattcatgatatgcacgactgcaatgacttcacaaaattatgcaat
ttttctgcttttgttccacccaatacgtcactttttctattgtttaagtg
acgtattggtggaagttctcagaagactctccagtggtacatatcatgaa
taaccCTTCGCTGGGTGCTCTATGCTGATAGCTATAACGCATACTTTGGC
CGTGATTTTTCatctgattttttgtttttcttggtTCCCCTAAGTTCAAT
GCTTACTCAGCTGACACACAACATTCCttcgacgttcatctaacgttata
atGGACGTTGTAAACATTAGATATGTGCTAGCTGGCTGGGTATGAGAATC
ATTGTCCAAAACAAACACACTTTGGAATTTTTAAAGTATTTCGTTGCAAT
GATTGTCACTTATCTTATATATCATTGATAAGTTATTAAGACAGTTTCTA
CTAAATAGAAagttatcaattttttttacattatttaATCCAGGCTTTCA
tccatttgtttaaaaaaaaagtatgaGTCGATGTTTAGATGATCTTTAGC
CTGTGTATTCGTGGTGGGACGATCACATTAAAATGCTCTCTGAAGGAGGG
TGGGTTATCTCGAGCTTTTATCTTTATATGGCCAATCAAGATAACTCTCC
CTCGTTGAAGCGATAGATGTCGACTTGTCTACTAGACAATTTTAACCGCT
CGTTGAAGGGTATGGGAATGAAGTGTGGAGGTGACAGCGAAGCTCACTTA
CTTTGTTGAGTAATATGACAGGCTAGTGTGTTGAACTTTGGTTTTTAAGA
TGCAAGGCTAGTGGCTTTGACCCATTACTCTTATGGTATATTATATGATG
TGTTTTGGATTTGGATAACTGTTTAATTTCGTTGTGATTTCCACGACTTT
TTTAAGAGTTAAATTCCACTTTAACTAAGTTGTCGTATGAAGCAAGGTAC
AAATTGTACGATACAAGTGTCTCTTTGTGTTAGACTTCTTTCTACTATCT
AGATATGGATAATTTTTCTTTGCGTATTGTGCTATTGGTTAAGATAACTC
AATAGTCGAGAAAATTATCCCATTCCGAGAAATCTTCTAAAGACTGACCC
TCCCACCATAATCTGTTACTTCATATTTTATTAATCAAATCATTTCATTC
ATAAAGCGTTAATTTCCTTTGGCTAggttttccattttttataaCAAATA
GACATGACAGACAAAtcatttaaattgaaaataaattgtcTCGCGATGCA
CTTTCTTTCGTTATTACATGATTTGCATGATCTCATTAAAAATTTTCTCT
CTAATCAAAGATAACATCAAAACACGCTATACATTTTATATACAGTGGAA
ATTCTTTAACCCGAACCCAcggcgttctaaatctagacGCAGtgctcgaa
cctctataactcgaatgtctccataactcgaacaaattttactgtccatt
cagttaacaatgttaacaaaatcttacttcataactcgaaatttccttaa
ctcgaacaaatttgtttcCCTTGCTTGATCGAGGTATGGAGACACTACTC
AAAGGAGAtatcgagttatggagtaaggtttataaggcattgggcttttc
cagaaatagtccgtttcttttcaagtaaaaaatacgatatccaggggtaa
acctttataagagaggatatccagggggttgagcatatttttaagagtgg
atatccaggtgGTCTTTACTAGTAacgttcgatacttcgaaaaatcaata
tcctcaatttcctttttctggaaaagcccattgttaTCTAAAGGAACGAG
AAAATATGTTAGAGTTAAAGatacattcgagttaaagacgTCAGAGataa
agagactccactatGTTGAATTTAACTCCACTTTCTTTACTTCTCCAGTC
TGTCGGACAGTCAGACGCAACGTAACTTGCAAGACCGGCTGCAGATGCTA
AGTCCCAATCGCTTCAAgaagttgaagaagaaaaatagatTAACACAGGT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020598-exon-sc0000359-1491911889:122624..123118 | TCONS_00020598-exon-sc0000359-1491911889:122624..123118 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1510915933:122624..123118 | TCONS_00020598-exon-sc0000359-1510915933:122624..123118 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1575043694:122624..123118 | TCONS_00020598-exon-sc0000359-1575043694:122624..123118 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1491911889:123891..124032 | TCONS_00020598-exon-sc0000359-1491911889:123891..124032 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1510915933:123891..124032 | TCONS_00020598-exon-sc0000359-1510915933:123891..124032 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1575043694:123891..124032 | TCONS_00020598-exon-sc0000359-1575043694:123891..124032 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1491911889:128772..128874 | TCONS_00020598-exon-sc0000359-1491911889:128772..128874 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1510915933:128772..128874 | TCONS_00020598-exon-sc0000359-1510915933:128772..128874 | Clytia hemisphaerica | exon |
| TCONS_00020598-exon-sc0000359-1575043694:128772..128874 | TCONS_00020598-exon-sc0000359-1575043694:128772..128874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000359 | supercontig | sc0000359:122624..128874 + |
Blast
The following BLAST results are available for this feature:
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