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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020578 ID=TCONS_00020578|Name=TCONS_00020578|organism=Clytia hemisphaerica|type=transcript|length=2014bp
ggcgagttcccggtgtaattttgaacaccacaattgatttttaagcgcct
caaacgacagttggaaagtagagttttaactctgagttttaacacgaggc
ttaggacttaggaccttaggatctcaggatttaaaagctcaaatttgctc
aaatgaggcttggaatatagcctagaagccaccaaacccctctaaaattg
aaatattcaatggaagaaaatcgaagtgctaaaatagcaattctcacccg
aactttaaattctgaaaaactttaaaatacacttaaatctcaatatattt
cgagggtGATTGTAGcgacaatagaatttcaaaccTCACTTGTCTAAAGC
AGGAAGTTCTCTTTTGGACTCATCGCGTCCAGCACCTCAATTTATCCCTA
CTGATagtcaattttcaacttgtCACTGAAACAGGAGTGTGCTGTATGTA
ATTCGTAATTAAAGGgagttttgaattgaaaagggTTAAAGTATCTAGCG
GTGAATCAGATCCCTACCATTCTTTGCATAACTCTGAATTATAATACACT
CAAAAATTATAATCTTAATTCTTATTACTTGGACAaatgtttcttgattt
ttgttaCTGTATGATGGCAATTCGTTACGAAAAAAAATGCCCTGGAAGTT
AGGAGTGATTAGGGCTTCTGTTTTTTACCTacattacacccccttctcac
cgaCCCTCTAAGACCCCTTCCCGCCGGAAAAATTGGCCGATATATcgttc
ccagtggaaaattagactctaatttttgtcccagttgaaaataatctatc
cccactgaattttctgacaaatatatattttctgggAATGTTAAAAATGT
CTGTAAGggcaaaatattcattcaaaatcatcatcattcATTCAAAAGTC
GTAACAACACGCAATGAAAACGAGGAACATTGGCTCTATATAGAGTTCTA
CTTTCTGAAATATGTACATGTTAGTATCATCCCCATCAAGTTTTTGTCCG
TTAATTTTACCCCCTCCCACCCCGGGCTGAAAAATTCTACcagatctgtg
agaaggggtgttacATTTGCTTGATTCCAGATTCTTTTTAGGTGTGNTTA
AGAAGTTTTATATCATGTAAAGTTATCAAGGTAAAGTACTAACATTGTAG
GATTCGTTATCTCCCAGTTTGAATATTTCGATATTTCGGCTAGCGTCTCT
TCGACTTTTAAATTGCCGTGTCGAGCTTTTATTTAGGTCAAAGAAGGTTG
TTGTTGTTCTTGAGGGGTATTACAAAAAGTGATGATTCTTAACTTCATCT
CTAAAAGGTTAAAAGGTCTTCTTAATCGACTTTCTACAACCGAAAAGTAC
AAAATATCAATTCTATCATGCGTCGATCTGACATGAAAAGCGAGAATTAA
ATCATCTTGTGATGTTTTTCTTAAACGAGCCGATCTATTAATTTGTACGT
ATTTTTCCGTTCGACATTAAGTGTCGTAACAAACTATACACTCTTATCTT
TTTCCTTAGAAAGACAAATCGTTGAAGCACCAAGGCAAGAAGCATAGTCA
TGAGTCAATCGATCTCGTTTGAAGATAGAGTAAAGAGtataaagagaatt
tttttaaagacaatcCGAAGATACGTTTCAGCAAGATGAGATACGAGCAC
TGCAAAAAACTTGTCTCACAAATGAACTGAATACAGACTTGAGCAGTATT
TCGGCTGTTATTTTCTTAGTATGATTGAACCCCCGGTGGGGGGGAGGTAC
TTCGGCAAAAATATGGGCGCTGGGTATGACGCGTGCCTTAAGGGCTGGGt
caccctcccaaagtctctctaaggtttACCAAGATCACAGCTTTAGGGGA
TCTCTTTTTTGTGACACTGTAATGTCTTCTTTCGAGAGTAGAAAATGTTG
CAAGAGCTTGTCAATCAATTAATTTCACAAATTTTCaaggaagaaagaaa
ataaacctAATAAGTTTACCTGATTTAGTTAAGTTCAAAGAGAAggagat
tttttggcctttga Run BLAST on NCBI transcript from alignment at sc0000358:47873..49886 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020578 ID=TCONS_00020578|Name=TCONS_00020578|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at sc0000358:47873..49886 (Clytia hemisphaerica)
tcaaaggccaaaaaatctccTTCTCTTTGAACTTAACTAAATCAGGTAAA
CTTATTaggtttattttctttcttccttGAAAATTTGTGAAATTAATTGA
TTGACAAGCTCTTGCAACATTTTCTACTCTCGAAAGAAGACATTACAGTG
TCACAAAAAAGAGATCCCCTAAAGCTGTGATCTTGGTaaaccttagagag
actttgggagggtgaCCCAGCCCTTAAGGCACGCGTCATACCCAGCGCCC
ATATTTTTGCCGAAGTACCTCCCCCCCACCGGGGGTTCAATCATACTAAG
AAAATAACAGCCGAAATACTGCTCAAGTCTGTATTCAGTTCATTTGTGAG
ACAAGTTTTTTGCAGTGCTCGTATCTCATCTTGCTGAAACGTATCTTCGg
attgtctttaaaaaaattctctttataCTCTTTACTCTATCTTCAAACGA
GATCGATTGACTCATGACTATGCTTCTTGCCTTGGTGCTTCAACGATTTG
TCTTTCTAAGGAAAAAGATAAGAGTGTATAGTTTGTTACGACACTTAATG
TCGAACGGAAAAATACGTACAAATTAATAGATCGGCTCGTTTAAGAAAAA
CATCACAAGATGATTTAATTCTCGCTTTTCATGTCAGATCGACGCATGAT
AGAATTGATATTTTGTACTTTTCGGTTGTAGAAAGTCGATTAAGAAGACC
TTTTAACCTTTTAGAGATGAAGTTAAGAATCATCACTTTTTGTAATACCC
CTCAAGAACAACAACAACCTTCTTTGACCTAAATAAAAGCTCGACACGGC
AATTTAAAAGTCGAAGAGACGCTAGCCGAAATATCGAAATATTCAAACTG
GGAGATAACGAATCCTACAATGTTAGTACTTTACCTTGATAACTTTACAT
GATATAAAACTTCTTAANCACACCTAAAAAGAATCTGGAATCAAGCAAAT
gtaacaccccttctcacagatctgGTAGAATTTTTCAGCCCGGGGTGGGA
GGGGGTAAAATTAACGGACAAAAACTTGATGGGGATGATACTAACATGTA
CATATTTCAGAAAGTAGAACTCTATATAGAGCCAATGTTCCTCGTTTTCA
TTGCGTGTTGTTACGACTTTTGAATgaatgatgatgattttgaatgaata
ttttgccCTTACAGACATTTTTAACATTcccagaaaatatatatttgtca
gaaaattcagtggggatagattattttcaactgggacaaaaattagagtc
taattttccactgggaacgATATATCGGCCAATTTTTCCGGCGGGAAGGG
GTCTTAGAGGGtcggtgagaagggggtgtaatgtAGGTAAAAAACAGAAG
CCCTAATCACTCCTAACTTCCAGGGCATTTTTTTTCGTAACGAATTGCCA
TCATACAGtaacaaaaatcaagaaacattTGTCCAAGTAATAAGAATTAA
GATTATAATTTTTGAGTGTATTATAATTCAGAGTTATGCAAAGAATGGTA
GGGATCTGATTCACCGCTAGATACTTTAAcccttttcaattcaaaactcC
CTTTAATTACGAATTACATACAGCACACTCCTGTTTCAGTGacaagttga
aaattgactATCAGTAGGGATAAATTGAGGTGCTGGACGCGATGAGTCCA
AAAGAGAACTTCCTGCTTTAGACAAGTGAggtttgaaattctattgtcgC
TACAATCaccctcgaaatatattgagatttaagtgtattttaaagttttt
cagaatttaaagttcgggtgagaattgctattttagcacttcgattttct
tccattgaatatttcaattttagaggggtttggtggcttctaggctatat
tccaagcctcatttgagcaaatttgagcttttaaatcctgagatcctaag
gtcctaagtcctaagcctcgtgttaaaactcagagttaaaactctacttt
ccaactgtcgtttgaggcgcttaaaaatcaattgtggtgttcaaaattac
accgggaactcgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020578-exon-sc0000358-1491911889:47873..49886 | TCONS_00020578-exon-sc0000358-1491911889:47873..49886 | Clytia hemisphaerica | exon |
| TCONS_00020578-exon-sc0000358-1510915933:47873..49886 | TCONS_00020578-exon-sc0000358-1510915933:47873..49886 | Clytia hemisphaerica | exon |
| TCONS_00020578-exon-sc0000358-1575043694:47873..49886 | TCONS_00020578-exon-sc0000358-1575043694:47873..49886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:47873..49886 . |
Blast
The following BLAST results are available for this feature:
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