TCONS_00020571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020571
Unique NameTCONS_00020571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020571 ID=TCONS_00020571|Name=TCONS_00020571|organism=Clytia hemisphaerica|type=transcript|length=1472bp
AATAACTACTCGTGTTAACGAGAAAAAAACTAAcaataaaattaagaaaa
tttggCTCTGGTGACAAGATGGCGGCAACTTCACTTGAAAAGTTACAAAC
AACACGACAGAAGTTGAAAGAAATCGAATCACAACAAAACATTCTGCAAA
CAGACATCTTAAAAGTTTCATCCAAAACTGAGTTAGAAGCTTGGAGAAAG
AAGTTCACTGTACAGCAATCAACATTAGCAGAAGTCAATAAAGATTTATC
AAATGTGAAGAAAAATATCAGTTCACTGAGAGACTCTCAACTATCTTCAC
AATCGCAAAGTCAAAGCCAGTCTGGTATCTCAAGTGAGAATAAAAAGTTG
ATGAGACAAGCCAAAGAGTTGTTATCTCAACAAAAAGTTTTGGTTAAACT
ACTTAAATGTCAAAAAGAATTGAGTGGAAAGTTTCAAAGTTTAAGTTTAA
AGATTACCTCCATTGATGACGAATCCAAAGAAGTAGCAAGGAAAGCAACA
CAGACTGATGTCATTCAAAAGAAAGATGTTTTGATGAACCCTTTCCATac
aAAGCAAGCAGTCAATGATAAATGCAAAAGCAAATCAGAACTGGATATAG
CTAAAAGAACCCCAACAGAAAGAGTTTCTGAAACCCCATATCGACTAAAT
GATGTGgctgaaatcaaaacaattcgATTATGGGAAGGAGATGAATTTTG
TCAAAGTAGAGATTTATTGCCTGACAATTTCTGGGAAGTGGGACTTGAAA
CTGTTGACCTTTATGAGAGATTAGTCAGTGGGGAAGATAACATGACTTGG
TAGTTGTTCAAGGTAGCTTActgttttttgcatttttttaatacATCCAC
TCTACCATTACCTTGCTTTGCTCTATAGGAGTGTGGCTGATGTGTTGATC
TAACCTGCTTGTTCAGTCAAAACATATAAAGTGTTCCTTTTGTGCTCAAA
AGCTCATGAAAAGTCTGGATGAAAAAACTGCGAATCGCTTTTCACTGACC
TGGGTAGATTCCCTTACGAAGCTCGCGTATTAACAAGATTCTGCTCGGAA
TAGCCAATGATAGCTATGAAACTGCGCACAACGAAACACTTAGCTTTCTG
ACAAGACAATTTCTAATTCCCACCTAGCtaggggtccacttaaagctttt
ttatagactggatggcgtgattatgtggcccggtagtatatggtaacaTG
CTTTCACTTAGGTGGGCtataaaacagtccgccagattttcgatgttttt
tgccaggttaaaaaaagaatgaagcaaagattttatttaaaacCAAGGGA
CTAATATCCGAACAGCCCATGATAGCCCACTATGAAAACTGCACACTAAG
AAACACTTCTGTTTCTGATAAGACAATTTCCAATTCCCGCCCTATATAGA
GACCTCtaataaagattttaaatttaaagaaatgaATTCTgtaaatacaa
ttcaatatcTTGTGCAAATATA
Run BLAST on NCBI

transcript from alignment at sc0000358:232720..239048-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020571 ID=TCONS_00020571|Name=TCONS_00020571|organism=Clytia hemisphaerica|type=transcript|length=6329bp|location=Sequence derived from alignment at sc0000358:232720..239048- (Clytia hemisphaerica)
AATAACTACTCGTGTTAACGAGAAAAAAACTAACAATAAAATTAAGAAAA
TTTGGCTCTGGTGACAAGATGGCGGCAACTTCACTTGAAAAGTTACAAAC
AACACGACAGAAGTTGAAAGAAATCGAATCACAACAAAACATTCTGCAAA
CAGACATCTTAAAAGGTAACATTGGCTTACTTTTACCATTCATTCAGTTG
ATGGTTGTATGGATTTTTTTATATTCTTCACTTCACTAAAATCTGATGGA
CTATCTGTCTTTCGGTGTATGTCTTTAAACTTTTTGGAAAACCTGGAGAT
ATCAAAATCGGTCGAGCTTGGCTGAAATTTGGCAAACTTGTAACTTGGCG
TAAAAAACTTGCGATGTTTTTCAAAAATCTTTTGGACCTGTGGCAAAATT
TTCACTATTGCTACAATTGGCTCCTGACCAGTGGGAATAAGCACCGAAGT
GGAGTGGTTCTTTAAAACCTGTATTTTCTCTCATATAGTTTCATCCAAAA
CTGAGTTAGAAGCTTGGAGAAAGAAGTTCACTGTACAGCAATCAACATTA
GCAGAAGTCAATAAAGATTTATCAAATGTGAAGAAAAATATCAGTTCACT
GAGAGACTCTCAACTATCTTCACAATCGCAAAGTCAAAGCCAGTCTGGTA
TCTCAAGTGAGAATAAAAAGTTGATGAGACAAGCCAAAGAGTTGTTATCT
CAACAAAAAGTTTTGGTTAAACTACTTAAATGTCAAAAAGAATTGAGTGG
AAAGTTTCAAAGTTTAAGGTAGGGCAACTGTTATGAACTTTTGATACATT
ATATTTTTGCTGAAGATTGATCGTTTTTCGTTATTTTTCAGAAATTTATT
AACTAGAGAATTGCTCTTACATGTTCGTTCTTAGCTTATCAAAATCTTTG
TTATTTGTAAATGTGTGAAGACCCTTAGATTTGGTAGAATGAGACCCTCA
GATCAGGTAAAATGAGTAAGTGAAAACTAAATTTGGAGATTATTTGTAGA
AACTATACTGAGAATTCGTTACAAGAAGGCTATTTTACTAAAACCCTGAC
GAAACACGCGTTTAATCATGGATTTTGCCACCGAAGATCGTCTACCTCTT
TTTTCCAAGTCGTGAATTTTGGCTGAAGCTTGGGTGTTGTTGTTGTGTCA
CAATTTCCTTGTTCAATTCTTTAGCGCCTGCGTTTTTTGATTTGTCCGTG
CCTAAAATACCGCAACTTTTTAAACTGGTTTTCTTTCTAAATACCGCACG
AGTCGTGCAAAAAAAACTGAAGAAGAATTATCTTGCATAATTTCAAGATC
GCTTTCTTGTTGTCATAATAATCCAAATCGTATAATTCTTAATTCATCAT
TTTCTGAATTCTCCAGTTTAAAGATTACCTCCATTGATGACGAATCCAAA
GAAGTAGCAAGGAAAGCAACACAGACTGATGTCATTCAAAAGAAAGATGT
TTTGATGAACCCTTTCCATGTAAGAGGATTCATGTCTAATTCATTATATA
CAATAAACCGTCCCCTTCCCCTCCCCCCCCCAAATATTATCGGAAGGAGG
TCCAGCTGTTCACCGCTGCCGCAACCCATGTTATTCTTGTGATTTATGTC
TGTGTATTTCGCTGCCATCGAGGCAAAAGATCCAATCTCGATTGGACCTT
ATACTTCAATAGCAGCGATTTGCATCTACCCTAATGGCACTTGGCCGCAC
GAAAATTAAACGGTGCGTGAATTTTCAACAGTTTACTACTGGAAAAATGA
TATTTTCATGTAAGTTGAAGCATTAATATAGCCATTCTAACAAATTTTGG
CGTTATTTACGGCTCTTATTGGCGTAAGCCCAAAATCAGGCTGTGGCGTA
ATAAGGGCCGGCGTAAAAGGGGCCGGCGTTAAATTAGCGCCGGCGTAAAA
AGGGCCGATAAGGTATACAGAATTTGTCTTTCATTTTACCAAGAAGTACG
TGTTATTTACTTCGACTCGTGGACCCCCACTCATGATTAAAGTATTTATT
TCTACACACTTTGGAGAGGAAAATTAAAAGATTCTATTATAGATAATGTC
TTATAGTACACGAGCATAAAGAAGAAAGTGCGTCAAAGGATTAATTTTAG
TAATATATTAAATTATTAAAATAAGTAAGGAACGTCTGCTATGAAAATCT
TTTAGAGCATTATTCTTAGATTTCCTCTGGGAGTTGGACTTGGAGTTAGG
ACCANATATTAAATTATTAAAATAAGTAAGGAACGTCTGCTATGAAACTC
TTTTAGAGTATTATTCTTAGATTTCCTCTGGGAGTTGGACTTGGAGTTAG
GACCACCAGGGTCAATTCAATTTTACAAATATTTTTGTTTTTTTAGACAA
AGCAAGCAGTCAATGATAAATGCAAAAGCAAATCAGAACTGGATATAGCT
AAAAGAACCCCAACAGAAAGAGTTTCTGAAACCCCATATCGGTAAGCTTT
GGAATTAGCAAAAGGAAGTCAGTCCTGTCTCGGTTATCCGAGTCAGTGGT
GGATAGAAATGAAAGGAGTCACACGTTTTTTTGTAAGAACAAACTATATA
AGAACATAAAGCTTCGATGACCAAAATATTAACAACAAGTTAAGAACATT
TTAAGGCTTTGGGGACTTTAAAGCAGTGGCGTTGTGGCAGGGGGCCGGGG
GCGAACGCCCCAATATTAGAAATCATACTTCATGCACCTTAAATTGCGCC
CTTAGACCAATTTTACTGAGATAATTGTAAATTACTTGCAATCTTTTTCG
TCCGCTTCGCTCGCAATAAAGTTAATTGGTAACTCCTTTGCAATCTAGCA
AATTTATAATTAAATGAAAATCTAACCTCAGGCAAATTGGGAGGTCGTCA
GTAGTCCGACACTTTCTAGTCCGACAGTAAAATGTCCGACGTTGGATTTG
ACGAATGCGTCAGTATTCCGACAACAATTTTGTCCGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CAAAAAGGGACTCTTAAAGGCGGTGCATTCTTTTTGTTATAAATTATCTT
TACGCAAATTTGATTGTTCCTTTGTTTCTAATTATGTCAAAATGCCGCCA
AAAAGAACATATTAATATTATCTCAGTGAAAAACCCTTATTCAACATCGA
CACTCTAAAATCTTTCGTTTTCGGACAAAAGTGACGTCAGAAAAAAGACT
TTTAAATTGTAAAAATATCTTATAGATTCGGACTATTTTACTGTCGGACT
AGAAAGTGTCGGACTAGTGACATGCACCCGGCAAATTAAGGCCTGTCCAG
ATTTTTCAAATTTACCTCAATTTTTTATCACCGTTTCCACTTGTCATAGC
ATATCACTTCATACGTCGAAACATAGAGGTATAAAGAAAGACAGGAGATG
AATTTGTCGGTAATTGGTCGTTAAAGTCTTTTGATTTCTTTTATGTAATA
AATCAAAAGAAATTCTAGGCTTGCCCGATGAAATACGACTTTTTAGTAGA
ACTCAAGTTTGCTTTGAACATTCTTACTATCAGCATCGAAGATTTCCAGC
CTTCTAATATACAAGAATAAAATAAAATTTAGCTCCACGAAATAAGTTTG
CGTTCAATTTTGTCATCCATTAAATTTTGTTTTGAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGATGAAGGATTGCAAAGTTTACAGGCCCTTTTTTAATCC
AAATATTTTCTTACACCAATGTCAGAAACAATGAATCTCGTCCCATCTTA
TTTCCAACATTTAAGTTAGCCAATAAGATTTTACCTATCAACAAAAGAGC
TCATCAAAAATGCACGATATATGAGATTATGAGCATGCATACCTCGTAAT
ATTTTTAATCGTAGGGCGAGCATGGTTACAATAGCATACTTCTCCTGTTT
CTTTATACCTCCATGATCGAAAGAAGCGTATTGGAGTGTAGATCACTGGA
ATAGCTGTGCCATAATTAATTTTTTCACCCAAAAATTAATATCAGGCAAA
AACCAAAAAATGCCGACGTCAGCAAAACTTGTTTTTGAATAACTCCAGCT
TGGCTTATGGTATAAACATGAAATTTGGACAAAAGTTGCATATCATTAAT
AGGAACAGTTTTGCATAATTTCTTTTTCAAAATTTTGCTGACTTCACCAG
AAATTTTGTTTTTCAAAATGGACATGCCTTAATTTGCCTGAGATTGCGCC
CCAAGACCAATTTGCTGACAACAATATTGACATCATAAAACATCAATTTC
TTCGCTCGCCTCGCTCGCATTTTACATTGTTTCTTTAAGTTTNAGCACGC
GGAATGACATTTTAATGATGCAAAAAATCATTAATTATTTTATCATTCTT
ACGCGGATCATTTCAATAGGATACTGGTCTATCTATTTTATTAGGTCGTT
GCTCTAAAGCACCCAATTTCTTAGGAAAATGGACAAAAATGCTCACAAAA
TGGTGATATGTTAAGAACAGTTTGGCTTAAAACTAAAAAAGTTATGAACA
TCCTAAGGCTTCAAAAGTTGTGGATGTTCTTATAAAAATAAACTTGTAGG
GAATATTTAATGTCGGCATGACTGGCATGAAAATCGTTTATTGTATTCAG
GACCTTAGAGTATAAACCTTACTCCGTATCTCAAAATTTCCAAAATTGGA
GCAAATTTGTGTTCCCTTTGCGTTTTCGAGTATAGAGACTCCACTGTATA
TAATTTAATCAGTAAAATGGAGAGTAAAATTCCTTGACATTCTGTGTCTG
TTCTATTTTTTAGACTAAATGATGTGGCTGAAATCAAAACAATTCGATTA
TGGGAAGGAGATGNGGGGCGCCATTTAAAAAAAATGACTTTGGCCCCTCC
AGAAAAATTTTCCCGCAACACCACTGCTCTAAACAACGACTTAATAAAAT
AGATAGACCAAGAACTTCATACAATGGCTCTTAAAAATCTTTTGTTTTCT
ATTCATTTTGTATTCTTTCATCTTGCCGTCTNGTCTGTTCTATTTTTTAG
ACTAAATGATGTGGCTGAAATCAAAACAATTCGATTATGGGAAGGAGATG
AATTTTGTCAAAGTAGAGATTTATTGCCTGACAATTTCTGGGAAGTGGGA
CTTGAAACTGTTGACCTTTATGAGAGATTAGTCAGTGGGGAAGATAACAT
GACTTGGTAGTTGTTCAAGGTAGCTTACTGTTTTTTGCATTTTTTTAATA
CATCCACTCTACCATTACCTTGCTTTGCTCTATAGGAGTGTGGCTGATGT
GTTGATCTAACCTGCTTGTTCAGTCAAAACATATAAAGTGTTCCTTTTGT
GCTCAAAAGCTCATGAAAAGTCTGGATGAAAAAACTGCGAATCGCTTTTC
ACTGACCTGGGTAGATTCCCTTACGAAGCTCGCGTATTAACAAGATTCTG
CTCGGAATAGCCAATGATAGCTATGAAACTGCGCACAACGAAACACTTAG
CTTTCTGACAAGACAATTTCTAATTCCCACCTAGCTAGGGGTCCACTTAA
AGCTTTTTTATAGACTGGATGGCGTGATTATGTGGCCCGGTAGTATATGG
TAACATGCTTTCACTTAGGTGGGCTATAAAACAGTCCGCCAGATTTTCGA
TGTTTTTTGCCAGGTTAAAAAAAGAATGAAGCAAAGATTTTATTTAAAAC
CAAGGGACTAATATCCGAACAGCCCATGATAGCCCACTATGAAAACTGCA
CACTAAGAAACACTTCTGTTTCTGATAAGACAATTTCCAATTCCCGCCCT
ATATAGAGACCTCTAATAAAGATTTTAAATTTAAAGAAATGAATTCTGTA
AATACAATTCAATATCTTGTGCAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011546XLOC_011546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020571-exon-sc0000358-1575043694:238884..239048TCONS_00020571-exon-sc0000358-1575043694:238884..239048Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1575043694:238281..238560TCONS_00020571-exon-sc0000358-1575043694:238281..238560Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1575043694:237580..237682TCONS_00020571-exon-sc0000358-1575043694:237580..237682Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1575043694:236608..236702TCONS_00020571-exon-sc0000358-1575043694:236608..236702Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1575043694:232720..233548TCONS_00020571-exon-sc0000358-1575043694:232720..233548Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1510915933:238884..239048TCONS_00020571-exon-sc0000358-1510915933:238884..239048Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1510915933:238281..238560TCONS_00020571-exon-sc0000358-1510915933:238281..238560Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1510915933:237580..237682TCONS_00020571-exon-sc0000358-1510915933:237580..237682Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1510915933:236608..236702TCONS_00020571-exon-sc0000358-1510915933:236608..236702Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1510915933:232720..233548TCONS_00020571-exon-sc0000358-1510915933:232720..233548Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1491911889:238884..239048TCONS_00020571-exon-sc0000358-1491911889:238884..239048Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1491911889:238281..238560TCONS_00020571-exon-sc0000358-1491911889:238281..238560Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1491911889:237580..237682TCONS_00020571-exon-sc0000358-1491911889:237580..237682Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1491911889:236608..236702TCONS_00020571-exon-sc0000358-1491911889:236608..236702Clytia hemisphaericaexon
TCONS_00020571-exon-sc0000358-1491911889:232720..233548TCONS_00020571-exon-sc0000358-1491911889:232720..233548Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:232720..239048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.39205	0.152651	0	0	6.91864e-09	0	0	0	0	0.17857	0.113407	0	0	0.475345	0.409412	0	4.47214e-07	9.18182e-07	0	0	0	1.4175	5.36772e-08	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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