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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020559 ID=TCONS_00020559|Name=TCONS_00020559|organism=Clytia hemisphaerica|type=transcript|length=3829bpRun BLAST on NCBI protein sequence of TCONS_00020559-protein >TCONS_00020559-protein ID=TCONS_00020559-protein|Name=TCONS_00020559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=848bp KKSTLQTVQKTAIRCLQCNIRKYILVRNWEWWRLYTKVLPLLDVHRAERERun BLAST on NCBI transcript from alignment at sc0000358:153176..169381+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020559 ID=TCONS_00020559|Name=TCONS_00020559|organism=Clytia hemisphaerica|type=transcript|length=16206bp|location=Sequence derived from alignment at sc0000358:153176..169381+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000358:153176..169381+ >TCONS_00020559 ID=TCONS_00020559|Name=TCONS_00020559|organism=Clytia hemisphaerica|type=CDS|length=53487bp|location=Sequence derived from alignment at sc0000358:153176..169381+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020559 vs. Swiss-Prot (Human)
Match: MY18A (Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A PE=1 SV=3) HSP 1 Score: 330.872 bits (847), Expect = 1.138e-92 Identity = 251/732 (34.29%), Postives = 455/732 (62.16%), Query Frame = 1
Query: 22 VQKTAIRCLQCNIRKYILVRNWEWWRLYTKVLPLLDVHRAERELLDKNSELGSLTSKISDLEGQNKTKDDENARLKKKVQEISSQLSAFHSSVSGTGELLEQEASERFRLEEELEQSKMETERLSKQCHQLESELCEMKL--SAISNGNYPTESDDEADDANVWRDKYKALSRELESTRRRMTDQAEEEIQDLMSQKRSIEKQLTEEREESDEVRRQLQNSKRKLNKMTGEMEDMRLLLESVQGRNSDLEKKQKRFDTDVTGLHDQMESDRTQLDTLQRERDRMASEKTQLNNTVTQQEDEINQLKRKCERLTNELDDYGTS-GKDDAELATVRRMIRDLESKTQDQEEELDEQAGRIQQLEQAKLRLEMASQRDKQQFERDMEMKDEDIEKMKSDCQRKIRDYEDQIQDEIQRKEEANKMKRDLERRIFDLQTTVEEVDRGXXXXXXXXXXXXXXXXXDAKKAAESQSMKLNEQPEIKSLRNQLEDADFAKHMALKAKQQIENDMEELHNQIEAITRMKENAEERCLALSRENSDFQSRIEEAEDELDEVIRKNKQLIAQLSEAQTMNVDLKERVNTLEEDKILLNEKINALSQKLEVYQRDMVDKTEIERLEIKLQEAENKWEVEAQSRIKLEHQVNRLKGQIERIQDDKTELQNSVSRVQQNHSRVERQMKENKMELDSXXXXXXXXXXXXXXXXTNTQNMEDELSRKKTELTLAEKRIRLLQESMEND 2208
+Q AIRC+Q NI+K V++W WW+L+T V PL++V +E ++ +K+ E+ L SK+ E + + RL+ ++ E++S+L+ ++ +LL+ E +ER R E+E+++ + + + L KQ +E E+ E +L +A NG E DD+ D WR KY+ RE++ T++R+ + E++++ KR +E++L + + +S+E +R LQ K+K ++T E++D +L LE Q RN +LEKKQ+RFD++++ H++ + ++ Q + LQRE+D + +E L + +++ +I +K L EL D + KD+A LA V++ +RDLE+K +DQEEELDEQAG IQ LEQAKLRLEM +R +Q ++ME +DE++E+ + CQ+K++ E Q+++E + K++ + KR+LE ++ L V D +E++L+K+L++ + L DA+ + + EI L+NQLE+++F A+KA++ +E ++E+LH QI+ I + K EE+ L RE ++ Q+R+EE +++++E+++K+K +AQ S DL+ ++ ++K L EK+ AL ++E ++ MVDK+ + R E K++E E + E E +LE +RLK +E++ +++ + + +R ++ + R++RQ+++ K E+ L R+EAE R++ E E + +++E + +L LA KRI LQ ++E++
Sbjct: 1213 IQDLAIRCVQKNIKKNKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLRSKLEKAEKERNELRLNSDRLESRISELTSELTDERNTGESASQLLDAETAERLRAEKEMKELQTQYDALKKQMEVMEMEVMEARLIRAAEING----EVDDD-DAGGEWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFTCAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEAEASRKKHELEMDLESLEAANQSLQADLKLAFKRIGDLQAAIEDE 1939 The following BLAST results are available for this feature:
BLAST of TCONS_00020559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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