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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020301 ID=TCONS_00020301|Name=TCONS_00020301|organism=Clytia hemisphaerica|type=transcript|length=4916bpRun BLAST on NCBI protein sequence of TCONS_00020301-protein >TCONS_00020301-protein ID=TCONS_00020301-protein|Name=TCONS_00020301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1190bp MVMRKLSVPTRPPAMDWRHQRAIVLSSQAGDLVTALPKGVNDDYENNNGFRun BLAST on NCBI transcript from alignment at sc0000351:106133..120887- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020301 ID=TCONS_00020301|Name=TCONS_00020301|organism=Clytia hemisphaerica|type=transcript|length=14755bp|location=Sequence derived from alignment at sc0000351:106133..120887- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000351:106133..120887- >TCONS_00020301 ID=TCONS_00020301|Name=TCONS_00020301|organism=Clytia hemisphaerica|type=CDS|length=39303bp|location=Sequence derived from alignment at sc0000351:106133..120887- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020301 vs. Swiss-Prot (Human)
Match: RGRF1 (Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 1.427e-59 Identity = 124/377 (32.89%), Postives = 208/377 (55.17%), Query Frame = 1
Query: 2605 ETTPSQSPIRRKTSTSVI----EKSTRPQLVTRKSISINRGPLKIMSIFKHWLAKHPKDFLSDPEMITILEKFFDDIKSDERTLPVVKEIVGSLEKSVVSHRKSLAAVHPFDELLLQQHSLRNVQQSDINEEEELNKCTQLHAHPPNIVAANMTLLEHYLYSKISFNEFVSCQWTKKDKNERAPGIMRFIDRFNHVTSIISYGVVHGSTIEYRSQIIEFWIKTAAHCRDLNNFNACVEIVSALNASAVHRLKKSWEQVSKPLREVFNDLDTLVSADRSFKNLREAVHMCNPPCVPYLGCYLSDLLFAHEGGKTFNGGGLVNFAKMCRVSRLVREVKCYQQLPYTLELNKEVAFSLVNWDVEVNQDLLYDQSLLAEPR 3723
E TP++ RR + S +++ + V R++ + NR ++++ +HW++KH +DF ++ E+ + F +++ D E++ K+ + ++L P D + +I + E K H +A +TLL+H ++ KI + EF W K +KNER P IM+ FN ++++I+ ++ I R IE W+ A CR L+N+NA +EI S++N SA+ RLKK+W +VSK + + + L LVS++ FKNLREA+ C+PPCVPYLG YL+DL F EG + GLVNF+KM +S ++RE++ +QQ Y +E +V L++ ++++ LY+ SL EP+
Sbjct: 915 EGTPNKEKYRRMSLASAGFPPDQRNGDKEFVIRRA-ATNR----VLNVLRHWVSKHSQDFETNDELKCKVIGFLEEVMHD-------PELLTQERKAAANIIRTLTQEDPGDN---------QITLEEITQMAEGVKAEPFENHSALEIAEQLTLLDHLVFKKIPYEEFFGQGWMKLEKNERTPYIMKTTKHFNDISNLIASEIIRNEDINARVSAIEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKALIDKLQKLVSSEGRFKNLREALKNCDPPCVPYLGMYLTDLAFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTAYKIEHQAKVTQYLLDQSFVMDEESLYESSLRIEPK 1270 The following BLAST results are available for this feature:
BLAST of TCONS_00020301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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