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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020299 ID=TCONS_00020299|Name=TCONS_00020299|organism=Clytia hemisphaerica|type=transcript|length=2217bpRun BLAST on NCBI protein sequence of TCONS_00020299-protein >TCONS_00020299-protein ID=TCONS_00020299-protein|Name=TCONS_00020299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp MIATNDEIFEALSKQFEELQSNLECFLSPQEDLSSQLISSSKVLYDSLEQRun BLAST on NCBI transcript from alignment at sc0000351:51651..64408- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020299 ID=TCONS_00020299|Name=TCONS_00020299|organism=Clytia hemisphaerica|type=transcript|length=12758bp|location=Sequence derived from alignment at sc0000351:51651..64408- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000351:51651..64408- >TCONS_00020299 ID=TCONS_00020299|Name=TCONS_00020299|organism=Clytia hemisphaerica|type=CDS|length=15288bp|location=Sequence derived from alignment at sc0000351:51651..64408- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020299 vs. Swiss-Prot (Human)
Match: MPP10 (U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 1.389e-55 Identity = 122/215 (56.74%), Postives = 163/215 (75.81%), Query Frame = 1
Query: 1051 KSVFERRQXXXXXXXXXXXXANVSAKPWQLLGETTSKTRPVNSLLEEHVTFDHTSVGTPVXXXXXXXXXXXXXKQRIRDQAWDDVERKVKPATEPHEYKRAPELNMEKSKLSLAQVYEKEYLKQMXXXXXXXXXXXHVEIQKLMDKLFVKLDALSNFYFTPKPAKPDIKIITNTPSLQMEEVTPITMTSASQMAPEEVHEKKK-GDVIGEGEKST 1692
KS FE+RQE++++KI+ LE+ + KPWQL GE T++ RP NSLLEE + FDH PVITEETT +EDIIKQRIRDQAWDDV RK KP + +EYK+ L+ EKSKLSLA++YE+EY+K + E+EN +HVEIQK+MD LF+KLDALSNF+F PKP P+IK+++N P++ MEEV P++++ A+ +APEE+ EK K GD+ EK+
Sbjct: 357 KSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAPVSVSDAALLAPEEIKEKNKAGDIKTAAEKTA 571 The following BLAST results are available for this feature:
BLAST of TCONS_00020299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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