TCONS_00020287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020287
Unique NameTCONS_00020287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020287 ID=TCONS_00020287|Name=TCONS_00020287|organism=Clytia hemisphaerica|type=transcript|length=1642bp
tctaggggaaaataatgaaaaaatattaaaagtaaCACAATGACTTGGAC
AGATATCTGTCTATGTGCTGCAGTTCTGCTGGTCACTTTGCATTTTTGTT
GGTTATTATTCACTCGTCTACCAGCTGGCTGTCAAATAGCAGTTCTTCCA
CATAATATACCACTATTCGGTAACATTTGGTTATTCTTCAACCGTCCTTG
GTTtaacacacaaaaacaaaaatggtttcGTGAATACAAAGATTCCTTCA
TTGTATGGTTTTTCACACGGCACGCCCTGTTCACACGTGATATTAAAATA
TTCGAGAAAATCTTATCAAGTCCGAAACACTTATCCAAGGGTTTGGATGG
ATATTGGGTACTTGAGGAATGGCTTGGCAATGGTTTAATTTTAAGTGATG
GCCCCTTATGGAGGAAACGAAGAAAATTAATCACACCTACGTTCCATTTT
GATACTTTAAACCAGTTTATGAGAATCATGGATGAACAATCTAAGGAACT
AGTGAGGATTTTATCAAGTATGTCTGGTGGTGGTGGTGTTGATCAAAAAG
TCAATGTTTTTGATGTTACCAAACCTTTTTCTATGTCCATTATTTGTCAG
ACAGCTATGGGGCTCCAATTGCCACAGAAAGAATCTGGAGATGGGAGATA
TGATAGATGGTTTCAAATGGTTggtgaaagaatgtttcagtatATTGTCT
ATCCTTGGTTATGGTCTAAACGTCTGTCTGTTATGACCAAAGATGGGAGT
ATTTTGAGTTCAGCATTGAATAATTTACATCAATTTGTTAAAACGTTGAT
CGAGAAGAGAATAGAAAGTCGGAAAGAATGTTACTTAAATTCTGAGAAAT
CCTTGATGGGAGGAACATCGGATCGGAAGAATGGATTTGTTTCGAGTCTG
CACAATGTAGATTCTAACCATGGCAATCTCACTGGTAAAGCAACCAAGAA
TCGCATTTTGATTGACACTTTACTTGATGCTTATGAATCTGGTGATATTG
ATATTACAGGGATTTTAAATGAAGTCAATACTTTTGTCAATGCCGGGTTT
GAGACAACCTCCACAGCTCTGGCATGGTGTTTGTATCTGTTAGGTCGGAA
CATTGGTTGTCAACAGAAATTATGGGAAGAACTGAACGAATACAAGGAAA
GGCACCAGGGAACAAACACGATATTCAGTATACAAGATTTGACAGAGTTG
AAGTATACGGATGCAGTGATTAAGGAGTCAATGCGTATACACCCACCGGT
CCCTGTTATCGCTCGGACGCTGTCCGAAAATGTGGAATACGATGGTGGGG
TAATTCCCTCAGGGATTGTTATTTTTGATATTGTATCAATGAATCGAAAC
CAAGACTTGTGGGAAGAACCAATGTCTTTTAAACCAGAACGCTTTTTAGA
GAAGTTTTATGGGGATTCCAACAATGCACGGTCTCGTTCGAGTTTCTCTT
ACATTCCGTTCTCAGCTGGACCCAGGAATTGTGTTGGACAACGGTTTGCT
TTGGCTGAATTAAAGATTGCCTTATTTCACTTAGTATTGAAGTTCAACTT
CACATCTGTGCAGTGTGAAAAAGAGCTTGAAGAAACTTTCGATTTCTTTC
ACGGTTCGGATAACGGTTTATGGCTACAATTTGAGGAACGAT
Run BLAST on NCBI

protein sequence of TCONS_00020287-protein

>TCONS_00020287-protein ID=TCONS_00020287-protein|Name=TCONS_00020287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
MTWTDICLCAAVLLVTLHFCWLLFTRLPAGCQIAVLPHNIPLFGNIWLFF
NRPWFNTQKQKWFREYKDSFIVWFFTRHALFTRDIKIFEKILSSPKHLSK
GLDGYWVLEEWLGNGLILSDGPLWRKRRKLITPTFHFDTLNQFMRIMDEQ
SKELVRILSSMSGGGGVDQKVNVFDVTKPFSMSIICQTAMGLQLPQKESG
DGRYDRWFQMVGERMFQYIVYPWLWSKRLSVMTKDGSILSSALNNLHQFV
KTLIEKRIESRKECYLNSEKSLMGGTSDRKNGFVSSLHNVDSNHGNLTGK
ATKNRILIDTLLDAYESGDIDITGILNEVNTFVNAGFETTSTALAWCLYL
LGRNIGCQQKLWEELNEYKERHQGTNTIFSIQDLTELKYTDAVIKESMRI
HPPVPVIARTLSENVEYDGGVIPSGIVIFDIVSMNRNQDLWEEPMSFKPE
RFLEKFYGDSNNARSRSSFSYIPFSAGPRNCVGQRFALAELKIALFHLVL
KFNFTSVQCEKELEETFDFFHGSDNGLWLQFEER
Run BLAST on NCBI

transcript from alignment at sc0000351:208462..210616+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020287 ID=TCONS_00020287|Name=TCONS_00020287|organism=Clytia hemisphaerica|type=transcript|length=2155bp|location=Sequence derived from alignment at sc0000351:208462..210616+ (Clytia hemisphaerica)
tctaggggaaaataatgaaaaaatattaaaagtaaCACAATGACTTGGAC
AGATATCTGTCTATGTGCTGCAGTTCTGCTGGTCACTTTGCATTTTTGTT
GGTTATTATTCACTCGTCTACCAGCTGGCTGTCAAATAGCAGTTCTTCCA
CATAATATACCACTATTCGGTAACATTTGGTTATTCTTCAACCGTCCTTG
GTTtaacacacaaaaacaaaaatggtttcGTGAATACAAAGATTCCTTCA
TTGTATGGTTTTTCACACGGCACGCCCTGTTCACACGTGATATTAAAATA
TTCGAGAAAATCTTATCAAGTCCGAAACACTTATCCAAGGGTTTGGATGG
ATATTGGGTACTTGAGGAATGGCTTGGCAATGGTTTAATTTTAAGTGATG
GCCCCTTATGGAGGAAACGAAGAAAATTAATCACACCTACGTTCCATTTT
GATACTTTAAACCAGTTTATGAGAATCATGGATGAACAATCTAAGGAACT
AGTGAGGATTTTATCAAGTATGTCTGGTGGTGGTGGTGTTGATCAAAAAG
TCAATGTTTTTGATGTTACCAAACCTTTTTCTATGTCCATTATTTGTCAG
GTACCTAATTTTCCCCTACCGTTAAACTCCAACAATAAAGACTTTGATAA
GCATCAATAGAAACTCGTTAAAACCTATTTAGGTAGTGGCGTAACTACAG
CAGGAAagtttctttttgctttttgcttggAGCTGTGGgaatatcaaaat
atttctaaGATTAATGTTAGATATAGACATGCAATTATGCAACTAACCTT
GCTTTTTGGATTCAATGTCATTTGCAGCCAATCAGGCTTTAAActtcaga
agacattgcatgtTCGCATATCCTGAATATTAATCGTAACACATAACAGA
TATAATGGACTAAAAACTAGTTATCTTTTAGATGGATTAAATTACGCGTG
GATTACTTTTTGCGATTTTGCGAAATTTAGTTCTCgagaaagtttttaaa
aacaggACTTTTGCCAAAAGTTTCTAGGAGAATAAAATTTCTAGAACTTC
AATTTGCAaaaatccacttaaggtatgtaTACTATCTTTctctttttata
ttattttttacagACAGCTATGGGGCTCCAATTGCCACAGAAAGAATCTG
GAGATGGGAGATATGATAGATGGTTTCAAATGGTTggtgaaagaatgttt
cagtatATTGTCTATCCTTGGTTATGGTCTAAACGTCTGTCTGTTATGAC
CAAAGATGGGAGTATTTTGAGTTCAGCATTGAATAATTTACATCAATTTG
TTAAAACGTTGATCGAGAAGAGAATAGAAAGTCGGAAAGAATGTTACTTA
AATTCTGAGAAATCCTTGATGGGAGGAACATCGGATCGGAAGAATGGATT
TGTTTCGAGTCTGCACAATGTAGATTCTAACCATGGCAATCTCACTGGTA
AAGCAACCAAGAATCGCATTTTGATTGACACTTTACTTGATGCTTATGAA
TCTGGTGATATTGATATTACAGGGATTTTAAATGAAGTCAATACTTTTGT
CAATGCCGGGTTTGAGACAACCTCCACAGCTCTGGCATGGTGTTTGTATC
TGTTAGGTCGGAACATTGGTTGTCAACAGAAATTATGGGAAGAACTGAAC
GAATACAAGGAAAGGCACCAGGGAACAAACACGATATTCAGTATACAAGA
TTTGACAGAGTTGAAGTATACGGATGCAGTGATTAAGGAGTCAATGCGTA
TACACCCACCGGTCCCTGTTATCGCTCGGACGCTGTCCGAAAATGTGGAA
TACGATGGTGGGGTAATTCCCTCAGGGATTGTTATTTTTGATATTGTATC
AATGAATCGAAACCAAGACTTGTGGGAAGAACCAATGTCTTTTAAACCAG
AACGCTTTTTAGAGAAGTTTTATGGGGATTCCAACAATGCACGGTCTCGT
TCGAGTTTCTCTTACATTCCGTTCTCAGCTGGACCCAGGAATTGTGTTGG
ACAACGGTTTGCTTTGGCTGAATTAAAGATTGCCTTATTTCACTTAGTAT
TGAAGTTCAACTTCACATCTGTGCAGTGTGAAAAAGAGCTTGAAGAAACT
TTCGATTTCTTTCACGGTTCGGATAACGGTTTATGGCTACAATTTGAGGA
ACGAT

Coding sequence (CDS) from alignment at sc0000351:208462..210616+

>TCONS_00020287 ID=TCONS_00020287|Name=TCONS_00020287|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000351:208462..210616+ (Clytia hemisphaerica)
ATGACTTGGACAGATATCTGTCTATGTGCTGCAGTTCTGCTGGTCACTTT
GCATTTTTGTTGGTTATTATTCACTCGTCTACCAGCTGGCTGTCAAATAG
CAGTTCTTCCACATAATATACCACTATTCGGTAACATTTGGTTATTCTTC
AACCGTCCTTGGTTtaacacacaaaaacaaaaatggtttcGTGAATACAA
AGATTCCTTCATTGTATGGTTTTTCACACGGCACGCCCTGTTCACACGTG
ATATTAAAATATTCGAGAAAATCTTATCAAGTCCGAAACACTTATCCAAG
GGTTTGGATGGATATTGGGTACTTGAGGAATGGCTTGGCAATGGTTTAAT
TTTAAGTGATGGCCCCTTATGGAGGAAACGAAGAAAATTAATCACACCTA
CGTTCCATTTTGATACTTTAAACCAGTTTATGAGAATCATGGATGAACAA
TCTAAGGAACTAGTGAGGATTTTATCAAGTATGTCTGGTGGTGGTGGTGT
TGATCAAAAAGTCAATGTTTTTGATGTTACCAAACCTTTTTCTATGTCCA
TTATTTGTCAGACAGCTATGGGGCTCCAATTGCCACAGAAAGAATCTGGA
GATGGGAGATATGATAGATGGTTTCAAATGGTTggtgaaagaatgtttca
gtatATTGTCTATCCTTGGTTATGGTCTAAACGTCTGTCTGTTATGACCA
AAGATGGGAGTATTTTGAGTTCAGCATTGAATAATTTACATCAATTTGTT
AAAACGTTGATCGAGAAGAGAATAGAAAGTCGGAAAGAATGTTACTTAAA
TTCTGAGAAATCCTTGATGGGAGGAACATCGGATCGGAAGAATGGATTTG
TTTCGAGTCTGCACAATGTAGATTCTAACCATGGCAATCTCACTGGTAAA
GCAACCAAGAATCGCATTTTGATTGACACTTTACTTGATGCTTATGAATC
TGGTGATATTGATATTACAGGGATTTTAAATGAAGTCAATACTTTTGTCA
ATGCCGGGTTTGAGACAACCTCCACAGCTCTGGCATGGTGTTTGTATCTG
TTAGGTCGGAACATTGGTTGTCAACAGAAATTATGGGAAGAACTGAACGA
ATACAAGGAAAGGCACCAGGGAACAAACACGATATTCAGTATACAAGATT
TGACAGAGTTGAAGTATACGGATGCAGTGATTAAGGAGTCAATGCGTATA
CACCCACCGGTCCCTGTTATCGCTCGGACGCTGTCCGAAAATGTGGAATA
CGATGGTGGGGTAATTCCCTCAGGGATTGTTATTTTTGATATTGTATCAA
TGAATCGAAACCAAGACTTGTGGGAAGAACCAATGTCTTTTAAACCAGAA
CGCTTTTTAGAGAAGTTTTATGGGGATTCCAACAATGCACGGTCTCGTTC
GAGTTTCTCTTACATTCCGTTCTCAGCTGGACCCAGGAATTGTGTTGGAC
AACGGTTTGCTTTGGCTGAATTAAAGATTGCCTTATTTCACTTAGTATTG
AAGTTCAACTTCACATCTGTGCAGTGTGAAAAAGAGCTTGAAGAAACTTT
CGATTTCTTTCACGGTTCGGATAACGGTTTATGGCTACAATTTGAGGAAC
GAATGACTTGGACAGATATCTGTCTATGTGCTGCAGTTCTGCTGGTCACT
TTGCATTTTTGTTGGTTATTATTCACTCGTCTACCAGCTGGCTGTCAAAT
AGCAGTTCTTCCACATAATATACCACTATTCGGTAACATTTGGTTATTCT
TCAACCGTCCTTGGTTtaacacacaaaaacaaaaatggtttcGTGAATAC
AAAGATTCCTTCATTGTATGGTTTTTCACACGGCACGCCCTGTTCACACG
TGATATTAAAATATTCGAGAAAATCTTATCAAGTCCGAAACACTTATCCA
AGGGTTTGGATGGATATTGGGTACTTGAGGAATGGCTTGGCAATGGTTTA
ATTTTAAGTGATGGCCCCTTATGGAGGAAACGAAGAAAATTAATCACACC
TACGTTCCATTTTGATACTTTAAACCAGTTTATGAGAATCATGGATGAAC
AATCTAAGGAACTAGTGAGGATTTTATCAAGTATGTCTGGTGGTGGTGGT
GTTGATCAAAAAGTCAATGTTTTTGATGTTACCAAACCTTTTTCTATGTC
CATTATTTGTCAGACAGCTATGGGGCTCCAATTGCCACAGAAAGAATCTG
GAGATGGGAGATATGATAGATGGTTTCAAATGGTTggtgaaagaatgttt
cagtatATTGTCTATCCTTGGTTATGGTCTAAACGTCTGTCTGTTATGAC
CAAAGATGGGAGTATTTTGAGTTCAGCATTGAATAATTTACATCAATTTG
TTAAAACGTTGATCGAGAAGAGAATAGAAAGTCGGAAAGAATGTTACTTA
AATTCTGAGAAATCCTTGATGGGAGGAACATCGGATCGGAAGAATGGATT
TGTTTCGAGTCTGCACAATGTAGATTCTAACCATGGCAATCTCACTGGTA
AAGCAACCAAGAATCGCATTTTGATTGACACTTTACTTGATGCTTATGAA
TCTGGTGATATTGATATTACAGGGATTTTAAATGAAGTCAATACTTTTGT
CAATGCCGGGTTTGAGACAACCTCCACAGCTCTGGCATGGTGTTTGTATC
TGTTAGGTCGGAACATTGGTTGTCAACAGAAATTATGGGAAGAACTGAAC
GAATACAAGGAAAGGCACCAGGGAACAAACACGATATTCAGTATACAAGA
TTTGACAGAGTTGAAGTATACGGATGCAGTGATTAAGGAGTCAATGCGTA
TACACCCACCGGTCCCTGTTATCGCTCGGACGCTGTCCGAAAATGTGGAA
TACGATGGTGGGGTAATTCCCTCAGGGATTGTTATTTTTGATATTGTATC
AATGAATCGAAACCAAGACTTGTGGGAAGAACCAATGTCTTTTAAACCAG
AACGCTTTTTAGAGAAGTTTTATGGGGATTCCAACAATGCACGGTCTCGT
TCGAGTTTCTCTTACATTCCGTTCTCAGCTGGACCCAGGAATTGTGTTGG
ACAACGGTTTGCTTTGGCTGAATTAAAGATTGCCTTATTTCACTTAGTAT
TGAAGTTCAACTTCACATCTGTGCAGTGTGAAAAAGAGCTTGAAGAAACT
TTCGATTTCTTTCACGGTTCGGATAACGGTTTATGGCTACAATTTGAGGA
ACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011389XLOC_011389Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020287-proteinTCONS_00020287-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020287-exon-sc0000351-1491911889:208462..209061TCONS_00020287-exon-sc0000351-1491911889:208462..209061Clytia hemisphaericaexon
TCONS_00020287-exon-sc0000351-1510915933:208462..209061TCONS_00020287-exon-sc0000351-1510915933:208462..209061Clytia hemisphaericaexon
TCONS_00020287-exon-sc0000351-1575043694:208462..209061TCONS_00020287-exon-sc0000351-1575043694:208462..209061Clytia hemisphaericaexon
TCONS_00020287-exon-sc0000351-1491911889:209575..210616TCONS_00020287-exon-sc0000351-1491911889:209575..210616Clytia hemisphaericaexon
TCONS_00020287-exon-sc0000351-1510915933:209575..210616TCONS_00020287-exon-sc0000351-1510915933:209575..210616Clytia hemisphaericaexon
TCONS_00020287-exon-sc0000351-1575043694:209575..210616TCONS_00020287-exon-sc0000351-1575043694:209575..210616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:208462..210616 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31216	1.8107	0.44851	0.164549	2.20355	1.55659	4.74265	4.44002	5.15311	2.4033	8.37767	5.8699	3.82001	4.41171	9.79858	17.4401	7.88025	12.4012	12.0273	8.53735	8.90461	7.95114	5.02444	5.1099	1.11641	1.49456	2.10476	1.77526	7.14456	6.04732
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00020287 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 2.600e-67
Identity = 148/451 (32.82%), Postives = 233/451 (51.66%), Query Frame = 1 
Query:  304 EKILSSPKHLSKGLDGYWVLEEWLGNGLILSDGPLWRKRRKLITPTFHFDTLNQFMRIMDEQSKELVRILSSMSGGGGVDQKV-NVFDVTKPFSMSIICQTAMGLQLPQKESGDGRYDRWFQMVGERMFQYIVYPWLWSKRLSVMTKDGSILSSALNNLHQFVKTLIEKR---IESRKECYLNSEKSLMGGTSDRKNGFVSSLHNVDSNHGNLTGKATKNRILIDTLLDAYESGDIDITGILNEVNTFVNAGFETTSTALAWCLYLLGRNIGCQQKLWEELNEYKERHQGTNTIFSIQDLTELKYTDAVIKESMRIHPPVPVIARTLSENVEYDGGVIPSGI-VIFDIVSMNRNQDLWEEPMSFKPERFLEKFYGDSNNARSRSSFSYIPFSAGPRNCVGQRFALAELKIALFHLVLKFNFTSVQCEKELEETFDFFHGSDNGLWLQFEER 1641
            E IL+S K + K    Y  LE WLG GL+ S G  WR RRK++TPTFHF  L  F+ IM+EQ+  LV+ L        ++Q+  N F      ++ IIC+TAMG  +  + + D  Y R    + E +F+ I  PWLW     +M K+G     +L  LH F  ++I +R   + + ++C  +   S    + +++  F+  L +V  + GN                       +    I  EV+TF+  G +TT+ A+ W LYLLG N   Q+K+  EL++   +     T   ++DL +L+Y + VIKE++R+ P VP+ AR++SE+ E  G  +  G   +    +++R+   +  P  F+PERF  +      NA+ R  ++Y+PFSAGPRNC+GQ+FA+ E K  L  ++  F   S Q  +EL           NG+W++ + R
Sbjct:  109 EVILTSSKQIDKS-SMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEK-----HINQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGS--APSKNKRRAFLDLLLSVTDDEGN----------------------RLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPAT---VEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPE------NAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRR 520
The following BLAST results are available for this feature:
BLAST of TCONS_00020287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4V22.600e-6732.82Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
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