TCONS_00020286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020286
Unique NameTCONS_00020286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020286 ID=TCONS_00020286|Name=TCONS_00020286|organism=Clytia hemisphaerica|type=transcript|length=2623bp
gtttcctagaaatcagaacacatcatttgtataaaaaattgaaaggtcat
aacatttggtctcctagaagataagaacacatatttctaaaaaatctctc
cgccggctgcttctgtatATCAAAATACTGGATACTAAACTATAATGGTT
GAGAAACATTGGGATAGCATAAGCTTATACGGTATGAAGAGTACACTGAC
AACCTTCAAGTAGTGACTTACTGTAGTTGTTATGAATTTCAAGCTTTAAA
GTTGTCTCAGCTAGAATAGTATAGTTACTATAGATTGACTACTTATTCCC
AACTTTAAGATTCTTATCTATTGTTTTAGTAGTAATATTTTAAACTAACT
AATGTTTTATGTGTATTTACAGTAAATTCCTAAAATAATGAAGAAGAACA
TGTAAAcaactatttgaaaaaaagtgctATTCTAAGAATCATAATGGCAG
AATACAATGATTGTCTTGATAAACAGAGAGTTAAAGAACCTGGAATTATT
CTTGGGAATGAGGGCCCAAATGAAGATAGTCATGATATTAAACTTGGCAA
TGATGAAGATTATAATGAATCCCAAGGATCAACTGAAAACGAAGGACCAA
GCCATTATAATAACATTATTCATCACAAAGATAAAGCTGTCTCGGTATCA
TGTCAAAACTCTGAAGATTTATCCAAAAATCGAATTTTAACTACTCCTCC
AATTAGCGACTCTGAAAGCATGATAGAGGATCAAAACCTAAGTACTGACG
ATAATGACTCAAAAACAAttatttctgaaaatttgactCAGAGTCTATCA
AATGACTGTCAAGATTCTAAAACTTCGCTGAACGGTTCACCATCGATTGA
TACTGATGACGCAGATACACCCCAAAATGTTTGTCGAATCTGTTATGGAA
ATGACGAGGAAGAGCAGCTTGTAGCTCCATGTAAATGCCTAGGAACTGTT
CAATATATGCACGAATCATGTCTTTTAACGTGGCTTAAGTCTGGTGCCAC
CCATTGTGAACTTTGTAAAACTAATTATAACTTCAAGAGGATATTGAAAC
CATACTCTGAgCGCAAGTGGCCGAATGTTAGATCTTGGCATATTGGTTGG
ATAGTCAAAGAACTTGTTTTGCTTGACTGGTTTCATTTCCTGGAAACTGT
TTTATGTTGCATCACTCTGATGTTGATCAACCGCATGGCATCTTACGATT
TAGTATATCAATTCGCGCTGATTGCACTCTTCGAACTATTTTATTATGGG
CTGAACATTTGGAGTTGCTTTTATTTACTGTTCTATACAAGATGGTCTGC
CTTGAATCTTGAAGTTCATGTTTTGAATTACAATTGCGATGAAGATCAAA
CATCTTATCGGAAATTCTCAGACTTTCTTATATCTGGTCTTGAAAGTTAC
ACATCTTTGCTGAGAAAGAACCGTAGACTAAGAATGGTTGTTAATTCTAT
CGAGGAGCATGATTTTGCTGCATGACATGATTGTTTATGAGTATGTGATa
tactttaactttttttgaattattttagtGTGCGctaaattcttttgaaa
tattctgcAGATATTATTCTTATATTNAAATTATTTTAGTGTGcgctaaa
tttttttatgagtttACTGGTAAGAAATATTCTGCAGATATTATTCTTAT
ATTGAAACACAAAGTTATCTGTTTGATTACCAAATATTATGATGTGTTAT
TTGTATGGATTATTATTATTGTTCTCTTGTTGTTCTCTTTGAAAGACTCT
TTAAAAGACTCTGCAACCATGGATTTATATAGCCCGTACGGGCccgatgt
cgtgctttaagccatcgcaggcaaaaaaaaagttaatatccgaaaaaaat
attgttgctattgttttcgaaaacccgcgaagcttctgattggtcaagtg
ctgaaattctattgtaatgtcacgtgacttaggtatgatttcctacctaa
ccacggctcACTTTTCAGGAAaagtacgccatctagcccttcgggtttta
taaatctatgtctGCAACTAGTATGATAtatattttcaatgttttctgtt
ttctgtatCGGTTGATCGGTTGATGAGGCTAAATTTAGGGCAAAGCTTAA
GAAGGTCATTGATGATAAGTGCACGCTCATTTTAATATGAATAAACTGAT
CATTAGTTTCAAGAACAGCAGCGCTTAAAACATTTCAGCCTGAATATCAA
GAAAAATACAGAGCGTTTCTGAGGCTCAGGCAAAATTTGTTGGTTGTAGT
TTACAGTTTTCAGCTCGTGTTAAACGTaagattttttatgtttctttgtt
tatatttattttaagattatattgatttttccaataaaaacattcagcca
aaattttcatAGCAATAAATTTGTTTAATATGTGTTTgatcattttgatt
gaaaactAAACAGAATTCCTAGGGTAAGAGTCATAAGATATTTTGCATGA
GAccatagattttgaaaaagggAGATATGCAACGAATTCATTTTACTGCT
TGTTTCAACTGAAACTTATTGACAATGATATGAAAAAGTCATTGAATGGG
TCATAAAAAGACATTAAGAGATGATTTTggatactttaatcgtagaaatt
ttagtgagactaattttagcgta
Run BLAST on NCBI

protein sequence of TCONS_00020286-protein

>TCONS_00020286-protein ID=TCONS_00020286-protein|Name=TCONS_00020286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MAEYNDCLDKQRVKEPGIILGNEGPNEDSHDIKLGNDEDYNESQGSTENE
GPSHYNNIIHHKDKAVSVSCQNSEDLSKNRILTTPPISDSESMIEDQNLS
TDDNDSKTIISENLTQSLSNDCQDSKTSLNGSPSIDTDDADTPQNVCRIC
YGNDEEEQLVAPCKCLGTVQYMHESCLLTWLKSGATHCELCKTNYNFKRI
LKPYSERKWPNVRSWHIGWIVKELVLLDWFHFLETVLCCITLMLINRMAS
YDLVYQFALIALFELFYYGLNIWSCFYLLFYTRWSALNLEVHVLNYNCDE
DQTSYRKFSDFLISGLESYTSLLRKNRRLRMVVNSIEEHDFAA
Run BLAST on NCBI

transcript from alignment at sc0000351:204223..207132+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020286 ID=TCONS_00020286|Name=TCONS_00020286|organism=Clytia hemisphaerica|type=transcript|length=2910bp|location=Sequence derived from alignment at sc0000351:204223..207132+ (Clytia hemisphaerica)
gtttcctagaaatcagaacacatcatttgtataaaaaattgaaaggtcat
aacatttggtctcctagaagataagaacacatatttctaaaaaatctctc
cgccggctgcttctgtatATCAAAATACTGGATACTAAACTATAATGGTT
GAGAAACATTGGGATAGCATAAGCTTATACGGTATGAAGAGTACACTGAC
AACCTTCAAGTAGTGACTTACTGTAGTTGTTATGAATTTCAAGCTTTAAA
GTTGTCTCAGCTAGAATAGTATAGTTACTATAGATTGACTACTTATTCCC
AACTTTAAGATTCTTATCTATTGTTTTAGTAGTAATATTTTAAACTAACT
AATGTTTTATGTGTATTTACAGTAAATTCCTAAAATAATGAAGAAGAACA
TGTAAAcaactatttgaaaaaaagtgctATTCTAAGAATCATAATGGCAG
AATACAATGATTGTCTTGATAAACAGAGAGTTAAAGAACCTGGAATTATT
CTTGGGAATGAGGGCCCAAATGAAGATAGTCATGATATTAAACTTGGCAA
TGATGAAGATTATAATGAATCCCAAGGATCAACTGAAAACGAAGGACCAA
GCCATTATAATAACATTATTCATCACAAAGATAAAGCTGTCTCGGTATCA
TGTCAAAACTCTGAAGATTTATCCAAAAATCGAATTTTAACTACTCCTCC
AATTAGCGACTCTGAAAGCATGATAGAGGATCAAAACCTAAGTACTGACG
ATAATGACTCAAAAACAAttatttctgaaaatttgactCAGAGTCTATCA
AATGACTGTCAAGATTCTAAAACTTCGCTGAACGGTTCACCATCGATTGA
TACTGATGACGCAGATACACCCCAAAATGTTTGTCGAATCTGTTATGGAA
ATGACGAGGAAGAGCAGCTTGTAGCTCCATGTAAATGCCTAGGAACTGTT
CAATATATGCACGAATCATGTCTTTTAACGTGGCTTAAGTCTGGTGCCAC
CCATTGTGAACTTTGTAAAACTAATTATAACTTCAAGAGGATATTGAAAC
CATACTCTGAggtaattttcatattttttgcaTGATTCATCTTTGTTTAT
GATTTGCAAGTATGCTGTATACAAAATGTTGTGAATGTGTATGCAAACCT
TTTTACATATTTCAGACAAATTATACCCTCCGTCGTAAACGAAAAGTGCA
CTCTTTAGTTGTTTTTCGATTGATTTGGGTCATATGCTCTTATAACTTTT
TAACCTTTTAACCTTTATAAGACAAATACCTAAATATTGGTTATATcatg
aaatgaatttttgattgcTAACACCCATTATTTTTGTGTTCCATATAGCG
CAAGTGGCCGAATGTTAGATCTTGGCATATTGGTTGGATAGTCAAAGAAC
TTGTTTTGCTTGACTGGTTTCATTTCCTGGAAACTGTTTTATGTTGCATC
ACTCTGATGTTGATCAACCGCATGGCATCTTACGATTTAGTATATCAATT
CGCGCTGATTGCACTCTTCGAACTATTTTATTATGGGCTGAACATTTGGA
GTTGCTTTTATTTACTGTTCTATACAAGATGGTCTGCCTTGAATCTTGAA
GTTCATGTTTTGAATTACAATTGCGATGAAGATCAAACATCTTATCGGAA
ATTCTCAGACTTTCTTATATCTGGTCTTGAAAGTTACACATCTTTGCTGA
GAAAGAACCGTAGACTAAGAATGGTTGTTAATTCTATCGAGGAGCATGAT
TTTGCTGCATGACATGATTGTTTATGAGTATGTGATatactttaactttt
tttgaattattttagtGTGCGctaaattcttttgaaatattctgcAGATA
TTATTCTTATATTNAAATTATTTTAGTGTGcgctaaatttttttatgagt
ttACTGGTAAGAAATATTCTGCAGATATTATTCTTATATTGAAACACAAA
GTTATCTGTTTGATTACCAAATATTATGATGTGTTATTTGTATGGATTAT
TATTATTGTTCTCTTGTTGTTCTCTTTGAAAGACTCTTTAAAAGACTCTG
CAACCATGGATTTATATAGCCCGTACGGGCccgatgtcgtgctttaagcc
atcgcaggcaaaaaaaaagttaatatccgaaaaaaatattgttgctattg
ttttcgaaaacccgcgaagcttctgattggtcaagtgctgaaattctatt
gtaatgtcacgtgacttaggtatgatttcctacctaaccacggctcACTT
TTCAGGAAaagtacgccatctagcccttcgggttttataaatctatgtct
GCAACTAGTATGATAtatattttcaatgttttctgttttctgtatCGGTT
GATCGGTTGATGAGGCTAAATTTAGGGCAAAGCTTAAGAAGGTCATTGAT
GATAAGTGCACGCTCATTTTAATATGAATAAACTGATCATTAGTTTCAAG
AACAGCAGCGCTTAAAACATTTCAGCCTGAATATCAAGAAAAATACAGAG
CGTTTCTGAGGCTCAGGCAAAATTTGTTGGTTGTAGTTTACAGTTTTCAG
CTCGTGTTAAACGTaagattttttatgtttctttgtttatatttatttta
agattatattgatttttccaataaaaacattcagccaaaattttcatAGC
AATAAATTTGTTTAATATGTGTTTgatcattttgattgaaaactAAACAG
AATTCCTAGGGTAAGAGTCATAAGATATTTTGCATGAGAccatagatttt
gaaaaagggAGATATGCAACGAATTCATTTTACTGCTTGTTTCAACTGAA
ACTTATTGACAATGATATGAAAAAGTCATTGAATGGGTCATAAAAAGACA
TTAAGAGATGATTTTggatactttaatcgtagaaattttagtgagactaa
ttttagcgta

Coding sequence (CDS) from alignment at sc0000351:204223..207132+

>TCONS_00020286 ID=TCONS_00020286|Name=TCONS_00020286|organism=Clytia hemisphaerica|type=CDS|length=2064bp|location=Sequence derived from alignment at sc0000351:204223..207132+ (Clytia hemisphaerica)
ATGGCAGAATACAATGATTGTCTTGATAAACAGAGAGTTAAAGAACCTGG
AATTATTCTTGGGAATGAGGGCCCAAATGAAGATAGTCATGATATTAAAC
TTGGCAATGATGAAGATTATAATGAATCCCAAGGATCAACTGAAAACGAA
GGACCAAGCCATTATAATAACATTATTCATCACAAAGATAAAGCTGTCTC
GGTATCATGTCAAAACTCTGAAGATTTATCCAAAAATCGAATTTTAACTA
CTCCTCCAATTAGCGACTCTGAAAGCATGATAGAGGATCAAAACCTAAGT
ACTGACGATAATGACTCAAAAACAAttatttctgaaaatttgactCAGAG
TCTATCAAATGACTGTCAAGATTCTAAAACTTCGCTGAACGGTTCACCAT
CGATTGATACTGATGACGCAGATACACCCCAAAATGTTTGTCGAATCTGT
TATGGAAATGACGAGGAAGAGCAGCTTGTAGCTCCATGTAAATGCCTAGG
AACTGTTCAATATATGCACGAATCATGTCTTTTAACGTGGCTTAAGTCTG
GTGCCACCCATTGTGAACTTTGTAAAACTAATTATAACTTCAAGAGGATA
TTGAAACCATACTCTGAgCGCAAGTGGCCGAATGTTAGATCTTGGCATAT
TGGTTGGATAGTCAAAGAACTTGTTTTGCTTGACTGGTTTCATTTCCTGG
AAACTGTTTTATGTTGCATCACTCTGATGTTGATCAACCGCATGGCATCT
TACGATTTAGTATATCAATTCGCGCTGATTGCACTCTTCGAACTATTTTA
TTATGGGCTGAACATTTGGAGTTGCTTTTATTTACTGTTCTATACAAGAT
GGTCTGCCTTGAATCTTGAAGTTCATGTTTTGAATTACAATTGCGATGAA
GATCAAACATCTTATCGGAAATTCTCAGACTTTCTTATATCTGGTCTTGA
AAGTTACACATCTTTGCTGAGAAAGAACCGTAGACTAAGAATGGTTGTTA
ATTCTATCGAGGAGCATGATTTTGCTGCATGAATGGCAGAATACAATGAT
TGTCTTGATAAACAGAGAGTTAAAGAACCTGGAATTATTCTTGGGAATGA
GGGCCCAAATGAAGATAGTCATGATATTAAACTTGGCAATGATGAAGATT
ATAATGAATCCCAAGGATCAACTGAAAACGAAGGACCAAGCCATTATAAT
AACATTATTCATCACAAAGATAAAGCTGTCTCGGTATCATGTCAAAACTC
TGAAGATTTATCCAAAAATCGAATTTTAACTACTCCTCCAATTAGCGACT
CTGAAAGCATGATAGAGGATCAAAACCTAAGTACTGACGATAATGACTCA
AAAACAAttatttctgaaaatttgactCAGAGTCTATCAAATGACTGTCA
AGATTCTAAAACTTCGCTGAACGGTTCACCATCGATTGATACTGATGACG
CAGATACACCCCAAAATGTTTGTCGAATCTGTTATGGAAATGACGAGGAA
GAGCAGCTTGTAGCTCCATGTAAATGCCTAGGAACTGTTCAATATATGCA
CGAATCATGTCTTTTAACGTGGCTTAAGTCTGGTGCCACCCATTGTGAAC
TTTGTAAAACTAATTATAACTTCAAGAGGATATTGAAACCATACTCTGAg
CGCAAGTGGCCGAATGTTAGATCTTGGCATATTGGTTGGATAGTCAAAGA
ACTTGTTTTGCTTGACTGGTTTCATTTCCTGGAAACTGTTTTATGTTGCA
TCACTCTGATGTTGATCAACCGCATGGCATCTTACGATTTAGTATATCAA
TTCGCGCTGATTGCACTCTTCGAACTATTTTATTATGGGCTGAACATTTG
GAGTTGCTTTTATTTACTGTTCTATACAAGATGGTCTGCCTTGAATCTTG
AAGTTCATGTTTTGAATTACAATTGCGATGAAGATCAAACATCTTATCGG
AAATTCTCAGACTTTCTTATATCTGGTCTTGAAAGTTACACATCTTTGCT
GAGAAAGAACCGTAGACTAAGAATGGTTGTTAATTCTATCGAGGAGCATG
ATTTTGCTGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011388XLOC_011388Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020286-proteinTCONS_00020286-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020286-exon-sc0000351-1491911889:204223..205283TCONS_00020286-exon-sc0000351-1491911889:204223..205283Clytia hemisphaericaexon
TCONS_00020286-exon-sc0000351-1510915933:204223..205283TCONS_00020286-exon-sc0000351-1510915933:204223..205283Clytia hemisphaericaexon
TCONS_00020286-exon-sc0000351-1575043694:204223..205283TCONS_00020286-exon-sc0000351-1575043694:204223..205283Clytia hemisphaericaexon
TCONS_00020286-exon-sc0000351-1491911889:205571..207132TCONS_00020286-exon-sc0000351-1491911889:205571..207132Clytia hemisphaericaexon
TCONS_00020286-exon-sc0000351-1510915933:205571..207132TCONS_00020286-exon-sc0000351-1510915933:205571..207132Clytia hemisphaericaexon
TCONS_00020286-exon-sc0000351-1575043694:205571..207132TCONS_00020286-exon-sc0000351-1575043694:205571..207132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:204223..207132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.04334	4.09518	4.12553	5.11457	5.5787	3.87074	20.2597	17.9213	16.8137	9.12818	17.8508	13.4902	4.0931	6.34784	11.8486	23.4744	11.548	22.1962	7.99339	6.80758	18.2934	13.8218	10.433	9.88667	16.5122	16.5292	3.39174	2.57213	21.2018	15.9625
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top