TCONS_00020171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020171
Unique NameTCONS_00020171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020171 ID=TCONS_00020171|Name=TCONS_00020171|organism=Clytia hemisphaerica|type=transcript|length=839bp
gaaaaatgaaccaaaaccccttggaaaatcaaagACTCAGATCCCCTGGA
AAaattcgtcaatacccctgtactTTATGGTTAATAAACAGAATAGCCCA
TTCCATTGCATTGCCATTGACATTGTGAGcgggaaaaagttttttgtgaT
ATTGTGACTTACCTTTTTGGTTTCCACAAAAGGTGCAATTTGAAGTTGGT
GTTTTGATTTAAGATCTTTCATTGAAACCTCACTGGAAAGATGAGCATGA
TCTTCTTCGTTCTTGCTTGGTTCTGTTGTATTTTGTTGCTCATCGCCTGA
GTCAGATTCAGAGCCATACGCTGCTAAAAcgtccattttgtttttttcca
agTGACTTTCGATATCTCACATTCGtagatatattttttaatatactaGG
GAGGTAAAAACCGAAAATAACTCAATCATTTTTTTGAGTTACTTTTATCT
CCCTGATATTTATTTTAGCTTTTAGCCTGTCTTCCACAAATATCAACTCG
GCAGGctagaaaattttaaatcttcgcggttttttcaaagaaaagcGAAA
TTTCCAGccacaaacttttttttgaggCGCCAGACGTCGCCAGACAGCAC
ATCATCAGACATTTTGTCTAGACATACAAGGCGCCATCAAAGAGAGCAAT
CTGCTTGATACACAGGTCAGAGGCGCTCGTGATGGAGAAATTGAAGAGAC
AAACCACGCTCACTAAAGCAAACCAAAGTAATATTTTGAaaccaaaaaat
acaaataccaTAGCTAAGAAGACATCGAGCAATATGAAAAAGACGAAACG
AAAGGTGGAAAGTTTTCAAAGAGGTCAACTTCTTGAGCA
Run BLAST on NCBI

transcript from alignment at sc0000350:325791..343257+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020171 ID=TCONS_00020171|Name=TCONS_00020171|organism=Clytia hemisphaerica|type=transcript|length=17467bp|location=Sequence derived from alignment at sc0000350:325791..343257+ (Clytia hemisphaerica)
gaaaaatgaaccaaaaccccttggaaaatcaaagACTCAGATCCCCTGGA
AAaattcgtcaatacccctgtactTTATGGTTAATAAACAGAATAGCCCA
TTCCATTGCATTGCCATTGACATTGTGAGcgggaaaaagttttttgtgaT
ATTGTGACTTACCTTTTTGGTTTCCACAAAAGGTGCAATTTGAAGTTGGT
GTTTTGATTTAAGATCTTTCATTGAAACCTCACTGGAAAGATGAGCATGA
TCTTCTTCGTTCTTGCTTGGTTCTGTTGTATTTTGTTGCTCATCGCCTGA
GTCAGATTCAGAGCCATACGCTGCTAAAAcgtccattttgtttttttcca
agTGACTTTCGATATCTCACATTCGtagatatattttttaatatactaGG
GAGGTAAAAACCGAAAATAACTCAATCATTTTTTTGAGTTACTTTTATCT
CCCTGATATTTATTTTAGCTTTTAGCCTGTCTTCCACAAATATCAACTCG
GCAGGctagaaaattttaaatcttcgcggttttttcaaagaaaagcGAAA
TTTCCAGccacaaacttttttttgaggCGCCAGACGTCGCCAGACAGCAC
ATCATCAGACATTTTGTCTAGACATACAAGGCGCCATCAAAGAGAGCAAT
CTGCTTGATACACAGGTACAGTTAAATTTATTTCTTTACAACTTTTCTTG
AAAACTATATAACGAATGCAGCTCATGGCGGCCCCTACTTCTACCTCTTG
TGTACCTCTTTTTGGCTTTTGCTTGAACAGCTCATCCAACTCGTTTGTTG
AGTccaatcagttacatcaatatgccttcttacctgtctttaaaaatata
aataaaagtaatcacggaaaaggacgcgaaaaaaaagacataagtgtgag
aacagagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgaaagtttgtctcggcctttttataatgagcgagaca
tacgttctctgattacgcaattttcatattgacattttcgaggcattttg
atgtaactgccaatGCTTTGATgtttccttaaggatgttggaGTCAGCTT
GGCTAAGGTTAAAATAGTGGGCAAGTAGAGGTTCATCCGGAACAGTTGTG
AGGAAGGTGTCTAAgtgttttttgaatacttctttTTGGGGTAGTTTGTC
AAATCTCTTATCGGccagtatggatttcgtgtaactaacgccaaagatct
tcggcgtacaactgaaacgttttttGGCGCATTAGCGTAAGggtaccgta
gagtcgtctaatctcgacatacgtcttgcaatctcgacatagctttaggc
tggtcttcgaaataaaaaatcaaacataaacaaatacataccaaagttat
caattaatcactaaaatgtactctctctttatcacgtcacagattgttaa
tataatatgagaaatgtgaagtgttattacttatatttgaaaagaaaact
ttataacgatgtagtaatcgctaaaaactaattNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAAAGACTTC
CCctccagatatttttgtgtttgatattgacagcttttagaTTGCAAATT
CTCCCCAATCTCTGTTTTATATGGCAGGAAATGCCTCCTTTACTTTCGTC
ATAATCAAAATTCGGGACGTTGCCTTCAATGACGATCCAGGTATAAATTA
TTTGATACCGCTCTCTCCGTCTTTCAAGGCTATACAGTTTTAATGATTGA
GTTTTTCCCAATAATTTAGATGTCTGAGGGATGGAATTCCATGTAAAAAA
GATTTCTGAGCTTCTTCCAGTTGCTGGACAAGGCCACGCTTCCAGGGAGA
CCAGAGTTGTTGAGAACAGTAGTCCAAATGAGGGATAGCTAGTGCTTTCC
ATAAAGTTAACATGGTTTCAATTTTCCTTGATTTGAATGTGCGGTATATC
CATATGCACTTACCGTCAACTGTCCCATCTTGGGACGAGTGTatgcaaca
tgggacttgttaatatctggcctgtattttcacttactgctagttaaatc
tctttgacaacaaaattgttttgataactccaccaagtttatcaatcgaa
tactttctgtcataacatgtcacgataactttcacttaTAGtacgccctt
tttaacttttgttttcatttaaaatgaccgaATGGAGAATTGGAGAACGC
CGGCTGCCTAACTGCCTACCGCCCGATGAGAttagtgtgtaacttgccgc
acgagtgacgtcaaacgctcacaTTCGCGCGTGTTCCacttctgattttt
ttcatatttcaatttaaaagcctactcagtgcgaaagagaaatcgtgtat
tttctAATACGCGGCTcatttaactcaaatcaaatgactttggaggttcg
gtgaaatggtggtggaatggccgtcccatgttgcgtaagatagtcccaag
ttggagcagttgacggtatattttttacttttttcatttgTTCTTGGATA
TGTTTCTCATAAGTCAACTGAGTGTCTAGAGTGACTCCAAGGTCTTTATC
TTCGTCTttattttcgatcaacattGCTGTGTCAGAAAAATAGCGTGAAC
TTTGCTTCAGAGCGTTGTTTTTCCCGTAGGCAAGGTGCTCAAATTTAAGA
CCATTCAGCTGCATGTTGTCAGCCCTCGAAATTCAAGTAAAAGTAAGTCT
GCACGTAAGTGCCGTCCAAATCCGGCCAAAGGCCGGCAAATTTTTGCCGA
CCTAAGCTTGTTTTTAGGTCGGCAATGCCGATCTGAGCTatattttaggt
cggcaaagttgTTTAAAGGCTACGGCANGTACTGATAAACATCCTCCAGT
TTGGAtatttctttcataaaatgggTGTCGTCAGCAAACAATGCCAAAAA
AGAATGAAGGATGTTGTTATCAATATCTTGAATCATGATCAGGAACAATA
GCAGTCCCAGCACAGATCCTTGCGGCACACCTGAAATAACATCTGTTTCT
GAGGACAAGATTGAGTTTACTGAAACTCTCTGTGTTCGATGAGTCAAAAA
GGATCTGATCCATTCAAGGAGCTTATCCTTTATGCCATTTTTCTGAAGCT
TGTGTAACAAAATGGTATGGTCTACTCTATTAAAAGCTTTACTGAAGTCT
AAATATATAACGTCAATGTTGTTTCCATTCTCTAGGTAATGGATCAGTCT
TTTGGTGTGTTGAAGCAATTAACTAAGACAGGAGCGGTCTTTCCTAAAGC
CATGTTGATTATTGTTATACAGATTGTTTGCTTCTAGATGATTCTGTATT
TTGGCTCGTACAATCTTTTTAAAGACCTTTAAAACGTGGGATGTGAGGGC
AACGGATCTATAGTTTTCAGCAAGTCCTTGATTCCCTTTCTTGTAAACTA
GGGATATATGTccagtttttaaaagtttggaGTGATTCCTTTGTTAAGTA
TGTTTCTTCAGATGATTGAAAGTGGTAGAGCAATGTTATCTTTAGTTTTT
AGCAGAAGAAtggtttagatttcgagaaGCGATTAGTGTACAAGTAAAAG
AATTTTGGGTTGGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTC
CCTCTCTTGAGCAAAGGaagtagtcagttcaaggtgctggcGGGATGCTC
ATTAGTAAGTGTCTATAGTTgtgagaataggcctctaaattTAGAGCCTT
TAaagcctcctgtaactcaaccaaatagaaaagaaaaagaaatttcatgc
caaaaTAGCCGTTGATAAaaggttagccaatcagatttgcgcactttcaa
tcaaaacaatgatatcacgtgatttcaacaattgtttaacaaCCAATAGA
AATCTGCggccagatttggcatctacaaaaatacccggctactgTAACTC
TGttgtttttatattatttttcgttttaactaaatgtTATACTTCAAAAA
CACACaaacagagtagacgggtctcccagctagggTATTAATGAACTTTT
CCAGTGgtcaaattttagattttctctCAGGATTTTCAGAGGGCTCTCTC
TCCTCATAAAATGACATCAATGTTGTTCTCCAACTCggtctttttcacaa
aatttcaacttttccaTTCCAGGGGGTTCTACCCTGATTTATTCCAGGGG
ATAAACATGGCATTTAAATTTCCAGGGGTGTTGGTGAAAAAAGTATGTCA
AGTGACAgtgtaaaatttttgatttgattgaattatttttaagtttggaa
aaaaagtatATACTGATGTTGTtgggcagttccagaaaaaaaccgttgcC
CCCTGTGGATGACagggtttttgtttttttttcacttggaaatcctgaga
aatttgaaaaaggtttcggAAAATCCAGGATTTTTCCTCGTTATTTAGTC
ATATGTATCGAAAGTCCATGaaatttgctctattttcttgcTAAGTATCA
GAAAATCCAAGATTATCAGAAAGTCCAagattttcccataaaaaatcttg
aatgttaCAGAAAtactgaagtttttcaaaagtaaattgttacgGAAAAT
CCTTGTTGTCCACAGGGAGGTAACAGACTGTAACTTTAACCGCCCAAGAT
ATTGAAATCCAAAGTTCCAAATTCAGGACATCTACACTTTGTGGAAGcaa
tataaaaatgagaaaatttgaatttggaaAACTTCTGTTCATACCAGCTa
gtcatcaaactaaaataatCGAGAGCAGGCTAGAAGGATACCTGTAGATG
AGTTCAATAATTTTGAATAGTAGGATTGATCACTAGCCACGTATGGTTGT
ATGACATTTAGAGATGATCTATACCATAAAAAGTCTAAAGTAAATTTTTT
GATCCTGTCCTCTAATTTTCACCTAATATGGTTAAGGATAcctgaaagtt
tgaaatcaaactttgtaattatcatttttggacctaccccggtgggctgt
aggtcctataaattaacctctgttcgttcgtccgttcgtccgttcgttac
tagcttttctcgggattggctNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCAAAatatggccgagttcgatttttgagaaaaaatttttt
ccggttgaaaatgccggaaatcgccgtctttgcagattttcattatatgt
tttccttgaatttctatgttcttcactcaaaaacattattgataacaatg
ctcaccatcaagcatgattcaattgtcaataaaactgatttttgcgacca
gaactttctattaattttccctacaacccttccctctccccccatcaaca
atcaatgatgaatttattgcgttatgcattttcgctaaacgatatatttt
ctgactgatttttttctcctcgcattgctatctaactttcatcatcaggt
aggtccattcagcatctagcttgtttaatATGGCTTCTACAGAGTGTGAA
TGTCTTGAATTCAGAACTTTGGATGTAAATATCTTTGAATAGAATCACTG
TTGACAACTTTGACTTGAGTTTTTCTAATGCTTTCCATGATAGCTATGCA
Tggattaagttttatttttggacctaccccggtggaggacctataaatta
accgttgttcATTATGAGCTTTTCTCCAGATTggttattcaatttttctg
atattttgcacaaggaatcaaacccttgaatgtgacggagctcgattttt
ggaaaaaagtttttcggaTAAGTTTCACATAGGGTCCACCACCCCCCAGa
aatttgggggtacctaataAAGAAAAGTTAGTTAGTTAGTGTTAGTGTTA
GAAAAGCCAGGTACCTGgaagtattcttaaatttaggggtacctgatatg
tttggggtTACCTGCATTTTCACAGACAAGTGGGGACGGgggctgttgtt
tttgtatgaagtcATGTTGGCGAGCCATTTTAACTTTCAGAAATACTAAA
TTTTTCCCACTGCGTGGGATACGAACATCAGTGAATTAGATGAGAAAACA
TACTTTTGGAACCCCTGAGATTAAAGGGGATATTCCACGCTCATTCTTAA
GGGGTTTACCCTTGAACCTGTTAAGTGCCACTGGGATTATATGAGATTGG
CAGGTCTGGGTGATTTAGAATGGGTGGttgtaaaattatcaattatcagc
CAATCTAAAGCattgaaaatcaaagattttctctgTTAGGCCCAACTATA
GTTAGGCCCGCCTTTACCACGACTATAAAGAAAGTATCTGGTGAAGAATG
TTATTGAGGTCCTGTTCAAAATCAAGGGGATTGAAAAGACTGATTTGTCT
GAAAGATTTCAaggtttttatgattttattaaAGAAAACGTCTAAAATAC
CCCTAGTATTTTAtgcattttaaggttttaaggGAGTTGAGGATTCAACC
TTGAGAGtttaaaattcaacctttctccCACTGTCGATAGATTTCCTTGA
AATCCTTTAAAACTAGCAAAGATCAACTAAAAACCCTAGAAACCCTTGAA
AGTTTGTGTTAAAAAACCCTTTAAACCCtggaaaattagtcaaaaatgaC
CCTTGAAAACCtttaatttgttgaaaaagatgTTCATCATGGAAGTATTT
TCCCAGGAATTGGAAttttgggggtacctgaacCCTGGAGGACCCTATGT
TTCAGCAAAAAAGAACAGCTTaataaaaaattggatcattaattttttct
gatttcttgcatgaaagtaaggtaccatcataggcAAAAGATGGTTTCAA
AAAACATATCTTTATCCtgtaagaatcactatttataagcataaatcaat
gttcttagccaaatcaatcaattttttgatgagattgatgtttttttttt
aaagaatatttatgCTTAGACGTGTTGTTATAGAAAAAGAGGctaaattc
gattttttttataagcacattaccaATTACTTAGTTATTAACTTTTCTCG
ACATTGGTtcattcattctttatgattttttgcacaaacgtgcataacta
taaaccctcgaatgtgactgagcccaattttcgaaaaaagattttggggc
AAAATCCagcaaaaacagcttaaaaagggttttttggacttcgtAGAAAa
ctggatcattaatttttccttatttttttgcatgaaagtagggaaCCATC
CTTTGTTAACAATGGCGgaagcagattttcacaaaaaaaactttcaccCT
AGATCGGTGTTCCTAAccaaattactcaaattttaGATGAGATAGATATT
CTCTAGACATTCTTCTTCCTTCCCTTAATACCCCCAATTGGCACAGGGGA
CAATCAGTGATGAAAGCAAACGacgaattttaataaatcgtcactttttg
tgttctggttgttttaacgggcacgctcacgtagatatcaataatatgtg
ttaaatgcataaccaggtagggccataaaagtatcacttgtttatgcAGG
AATCcctttaaattcaaaatcacCTTTCCACTGATCTACATTTCTAATGA
CCAACCAATCATTCTCATTATATGTGATAATAAGCCTCATTTTAatctat
ttttgttttcacaCTTTTCAAAGAAATTNTCTACATTTCTAATGACCAAC
TCTCATTAAATGTGATAATAAGCCTCATTTTAATCCATTTTTGTTTTCAc
acttttcaaagaaatttgtaaTTACTTGAATAAATTGTGCTATTTCAATG
GATTACTCAATCCCCCACGGTCATCATTataagaatttaaaaaagaaatc
agatCAGGTGAATACTTATTCTTGGTAATCCACACAGTTTCATTACAGCT
TGTTGCTATTATTGGAATCAATCACTTCACTTATTCTTGGTAATCAATAC
AGTTATTGGAATCAATCATTTTACTTTCTTCTGTATCAGGTCAGAGGCGC
TCGTGATGGAGAAATTGAAGAGACAAACCACGCTCACTAAAGCAAACCAA
AGTAATATTTTGAaaccaaaaaatacaaataccaTAGCTAAGAAGtaagt
tattttaatttctttcataTTGTAAGAGTGCTCATTCAAGTTTTGATTTC
AAAGTGCCCTAACTTAGTTCTGGACTGTAGAGTTTTACCATTAGATTTAG
CACTTGGGAGCTTAGAATCTCAGGATTCTCAAGCTAAAAATGTTCCACTA
ATGCTGAGAATGTAGTCCAAATCGAAACACTCAATTAAACAGAGGATTTT
TCatatgcgagttacgagttacaagttacgagttacgagttgcatttaga
accacgagttgcgagttactttttacgagttacgAATTACGAGTTGCatg
ttaacaaaataaaatcgcgagttgcgagttacgagttgcatcttaacaca
caaaattcgcgagttgcaaattaaaagtgcgagttgcaaattgaagGTGC
GAGTTGCATATTAAAAGTACGAGCTGCAAATTAAAAGTAGGAGctccaaa
ttaaaagttcaagttgcaaattaaaatcaagTCTGAGATTGTTATCTTAA
ATAATAACAGCACAAAAAAAAGCTAAACCCAAAGCAAAGCATGGAAAACT
CAGCCAAACTGTTTACGTTTTGTGACTAAAGTTGTGAAACCACTCAAATC
ACACATTTTTTCgctcatttttgtataaaacaaaacagagcattacataa
ctttaaGTTTTTAAAGGAAATGCGCGTGTTTCTTCCTATCGAGAAACATC
TTTAATGTTGCTTTTAATAACGTGGACGTTACCTGTCATTTTcaagacaa
agtgacactttttgacaaaattattgaCAGGCTACTTAAGTGTGATGCCT
Gcaaactttattacaccaaatattttaattgtacagaatgagatgccttt
gatacaaatagataaatattgtcAAGAGACAAACTTTGGGAagggcagtt
ttagagatagaattctaatcaattattctattgtccttatgttgataaaa
tcacttatttttatgaaataatgatctgatggtcaaatataaagcttctt
taaGCAATCCCAGCAAAGGTTTTGTCCCCGGGGGTGGGGGGTACTatcct
tgccgaccgacggggatgctccgctgaggttccaAAATATGACTCTATAT
GGGactcgtttttcaaaaattttgccgaaatttgcaAAAAGAGTGACCCT
GATTGGaattgaaaatccaaaattttctaaaattttctacttttacccca
aatttttcgaaaaaggcaCTCTACGAAGGACTGATTTGGGGTTTTATCAC
CTATAAATTTGATGCTGATAacacaaaaggatagaaatcgACAACCTATT
CAAGCTTCAATAGCTTTCAAATGGCTGTTCTACAatcatgttaaaaatct
attgagaatttagcttatttccttgtttttcaaaatttggagttAGGGCg
agattttgggccatctcttaaaTATAATTGGATATTTCATTTGGCACGGG
TTTATAgatttccaggctatattctgagccgtactgtattggaccatttt
tgaacttctgGATCCTCAGATCCCAAAGTCTTaaatctagcgttaaaact
ctatccttccaacctaacttagagcacttccaaatcgttgttagttttga
aaattcgtgggaatttccctttttctaaaatattacgaccatgattgtac
acgTTTTGCATGTGATCTTATAATTACTGTAGGTGAAACAACCCCTTAGA
GCCATCATTCTCAGCCTGTTACCTTGTTACCCCCTATTACCCCGTGTTAC
CCCATGTTAcccttttagtaacaacgcatcCAAACTTATTGCCCCCGCCC
GGGAGCACTTTTCTCTACAGTTCTTTACACTCATGCAATGTAAatacttt
ttgtacattttttttctttctccaccAAATATTTGCTCTTCTTATGTANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNctcgcacttttaatttgcaactcgcacttttaatttgc
aactcgcaattttaatttgcaactcgcacttttaatttgcaactcgcgaa
ttttgtgaattaaaatgcaactcgtaactcgcgattttattttgttaaaa
tgcaactcgtaactcgtaactcgcaactcgtataTTATCATATCACATTA
AACAACTCTACCGAACTTAAAATACttatcaacaacaaaatacacaGAAA
TCTCAGTATATTTTAACTATTTTTGAGACAATAAAAtgtagaaatagaaa
ttttttttgaatttttatgatatatttttttttaaagtaaaaaatttata
aaatgttAAAAGAAGATAAAATTAAGTTAAATAAATATAGTTAGGAGTTA
AAATATTTCGATTAGTTTTTAAGTATTTTagtagaaaattttttaaatga
gtTTAAAATTCATATTCAGTATAGCCTGAAGAAGGACTTTCGATTTTGTC
GTGTTTATCATCAACGGAGTAAAAGTCATTCCAATCTTTATCGAACTCTT
TGCAGTATTCTTCATTTTCCTCTTTCTCTCTTTGTTTTCGTTCCTTTCTC
GCCTCCTCTGCTTTGTGAATCGCTTCTTTCATTGTCATGGCAATTGGAAA
TCGCTTTTGAACAGGAGTTACTTTCAATAATGATGGAACTGTTTTTGTGT
CTGTTTCATCGAATGCGTTTAAGTGAACTGGAGATGAAACTCGCTCCTGT
GAAACGACTCGTGAGATTTTTGGACGATTAGCTGATGTCAGGGATGGAGC
TTTCTTGATTGACATTTCTTTTTCAGTTGACGTTTGTCTTAGTTTTGGGT
ttgtgatcattttcatcaggCGTGCGTTTACAGGTCCTGGTGCATGGACC
TTCATGTTTGATCCTAAGGCGTTTTTGGGTCCGGTAGAAAGGTCATCTTT
CTGAGCTTTCTGAGTTAGTGAGAGATTGACAGGCGTATCCTCGTAATCTT
GGAAAGATACAAAGcctttctttgatttttgagcGCTTGAACGGAAGCCA
GCGGCTTTTGTGGATGAGACTTGGGCGTTGACGACTGAGGATTTCTGTcc
ctgaagaagaagaagatgagtTTTTGTTTATACATAAATAAGATTAGGAG
AATGCATTCGATATTTAGCCTCAAGGAGGGAACCTGCGATTactttttca
atgttttgagaTAATTAATAATTATTACCTGGTTCTCCAGTTTAGCTTGT
TGTTGACGTCTTTGTCTTGCCAAGGCCAATTTGACATCAGTTGAaccttt
ttgttgtttcttttgtttcaccATATCAAGTCGTTCTCTGAGATTCCTAT
CTTTTTCTCGTTGatcatttatcaatttttgtttgtGTACTTCATGATCA
AGTTCTTTCGTTTCTTGAGAATCTTGAAAGCGTTCTTTACGCTGATTGAT
TTTTGCATTCCTCTCTTCGATCAGTTCATCGCGTTTTTTCTTGGCCAATT
GTTGTCCAAGAGATATCTCTACTGCTGTACGACGTCTCATTGATCTTAAT
GTACTGCTGGACAGTTGTGGACGTGGTGTACTGGCTCTATTGCAGGGACC
AGTCAACTTATGATCTAATTGCCAAGAGAAACCAGATTGACCTTTTTCCA
AATTTGGTGTTTGGCAAAGTAGCAGCTCTTCacgtttcttattttctttc
ttcGCGGGAACGTTCCTTGCACAGGCCGCGCGCATCGCGCGTTCAATCTC
CTCATTCACTTCATCCGCGAACTCGTCTATGCCACTGTCGAAAGAACTTT
TATTTGTTTCATCCAATGTGACATTTGAACAACAGTCTTTGATCTTAGGT
AAAGGACGTGAGGTGAGTTGTTTTGAAATAACTGGAGCAGGTTGTTCCTT
TTCTCCGCCAGTTAATTGATGAGACCAAGGGTGTGGTCCTTTATTGGCGA
TTTTTGGAAGAGGTCTCCTTTTTGCGAAAATAGTATTTTCGACTGGTGGG
AAATCCACCACACTTCCAATCCCGACTGTTTCCAATTCATTACTATTATT
TATCTGGGCTGGTGTACGGAGTCTTGAAGAATCAATTTCTGGTGAGCAGC
ATTTTGTATGGAGGTTGTTTTCTTCAGATGAACTGTCAGAAAGCGAAGAA
ATGATTCTGAGTGATTCACATTCCTCATTGGTTTGATTGGTGGGAATTTG
TTTGCCAACAACAAACAAGGTCGTGTCAGCTAAAATAAGAGTTTCAATGT
AGTATTAAGGATTTAGAAAAGTTGAGTTCTTAAAACCCAATGTTCTGAAA
TTTTCTCAGAAGTTCTACTATTCCAATCGATTCCGCGAAAATGTAAGCCA
GTTTGGGCGGgtttcattttattgttttatgttcaacaaacaaacagaaa
aattaGAATCAGAGAAAAAGTAAAAGACTCACCAATTATGAGACTTTCGC
TTTCTCGAACATCTGCAGGCAGTGAAAAAGAATCTTCTATCAAGAAATCG
TCTGGATCTGCCTCTCCTCTGCACCAAATCAATTTATGATACCACCTTCG
ATCAATAGCAATCGTCTCCTCTGCATTCGTTAACTTCTTGGCGAGTTTTC
GCAATTTGTCGCGTTTCAACCTGCGCCATAATCGTTGAAGGATGTTTTGT
TTACGTGGAGACACGTATGTCACTGGAAAATGAAAtataggaaaattatt
ttgcaaGTCGTGCGTCAGTTGTTTATCAAAAGCAATCGAGAATTATTCGA
AATTGAACAAAATTCGAGCACAAATCTTTGACTGAAAGAAATTTGTAGCT
GTAGTTGTTTCACTTATAATGAAAGAACACTTGCCCTCATATCTTTGAGC
TCTTGCAGAGAACCCTTCACTCATATCTGTGACGTGTCGCATGGAATTAA
TTTGATACTTATTTTTGCCGTCCATAATTTTGCAACCgacataataataa
taataataataataatgatatatttctggcatttccaaaatttacatttg
gctcttcacctgaaaattctgtatataatatatgtgcaatgtctagaaaa
aaaattttaaaataacctGGTAGTATACTGAAGAAAAATTGGGGCCGTAT
GTGGACAAGCAGATAGGGACGAAGCGGTGGGCTAGTATGACGAATAAAAT
GATTAGGATTAAGAAGTATATGGGGTAAAATGTGAATAGTGATAGAGCTA
GACTAAAACCTAAACAAATCCGAGTATCTGAGTATGCTAGCTGAGGCCAT
CGCAATGTGtgctattataaaaaattaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTTGACATGTTCATTCCATGTTAGGTTTTCGGTGAAG
ATGGACATCTTGCTTTGTAGCTACTCGGAAGTGATTTGAACAGCAATCGT
CGTCTTTAGTTGACTTATTCTCATGAATAGCAGCAGCCAATCTTCGATCA
GCCATTTTGAAGTCTTTTTTGCGTTAATAAGTCACTACTTTGTTCCTCTA
AAACTTATCTGAAGCTTTTctgcttctttttttttctagtaactcttatt
ttttatttgacgtcaatcattTCGTATTTATTATGTATTTTAAAGTATTG
ACGTCACTCACTCAATTGAGGCATTGTatcatagaaaaaaaaaacatagt
aCAAATCCTGAAATCTGGACCTCCACCGTTCAAAATTACTACCATGGGGA
GCCAATTCCCTTTGTTTTTAATACGACAGGGTGGGGCGGTGGTCTTGATT
AACATtgttttgaagaatttctttCCGCTTTTTCAGGACATCGAGCAATA
TGAAAAAGACGAAACGAAAGGTGGAAAGTTTTCAAAGAGGGTaggttttt
tttgtttgaaactttgACATTCTTTAACCAGGTGTTTTTTGTGCGTTGCC
GTATACCTtttcggggaaaacttcgtcggggaaaagtaacgaaattttgg
ccaagtgacgaatatttttcctcgacgaaaattttccccggcttTAATGT
GTTTActaactaccagcaagtgacgaatatttttcccagacgaaaatttt
ccccgacaaagtttttcccgacgaagttttccccgataaggtagatgAAC
TTTAGTATTGAAGTTTTCCGTGCATTGaaatttttagaacattttctTCG
CACTAAATGTGTTTTTCACGAGGTCCTTTATAATCCAGCAAGTCATTTTG
TTTCAATGTTGTTATACAACAAATTATAATGTGTTCCCAATTTTTGTTTC
AGTCAACTTCTTGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011332XLOC_011332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020171-exon-sc0000350-1491911889:325791..326455TCONS_00020171-exon-sc0000350-1491911889:325791..326455Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1510915933:325791..326455TCONS_00020171-exon-sc0000350-1510915933:325791..326455Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1575043694:325791..326455TCONS_00020171-exon-sc0000350-1575043694:325791..326455Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1491911889:335580..335684TCONS_00020171-exon-sc0000350-1491911889:335580..335684Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1510915933:335580..335684TCONS_00020171-exon-sc0000350-1510915933:335580..335684Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1575043694:335580..335684TCONS_00020171-exon-sc0000350-1575043694:335580..335684Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1491911889:342777..342830TCONS_00020171-exon-sc0000350-1491911889:342777..342830Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1510915933:342777..342830TCONS_00020171-exon-sc0000350-1510915933:342777..342830Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1575043694:342777..342830TCONS_00020171-exon-sc0000350-1575043694:342777..342830Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1491911889:343243..343257TCONS_00020171-exon-sc0000350-1491911889:343243..343257Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1510915933:343243..343257TCONS_00020171-exon-sc0000350-1510915933:343243..343257Clytia hemisphaericaexon
TCONS_00020171-exon-sc0000350-1575043694:343243..343257TCONS_00020171-exon-sc0000350-1575043694:343243..343257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:325791..343257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.33411	3.68523	3.4078	1.88274	12.0927	11.6519	5.72974	7.14405	2.7588	4.86924	3.89235	2.56905	2.06681	2.05088	2.81369	3.07323	3.32654	4.95079	1.39973	1.62097	1.76489	2.16593	2.15618	2.87055	16.5265	12.7766	0.496164	0.494605	0.765798	1.21282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top