TCONS_00020094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020094
Unique NameTCONS_00020094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020094 ID=TCONS_00020094|Name=TCONS_00020094|organism=Clytia hemisphaerica|type=transcript|length=1288bp
GGGAAAGTTGTGACAATTTTTTCGAAAGCACATGCTTCTTCATTTCACCA
CGAAACTTTCCCAAATCCTGACATTACTTTTAAGCATTCATATAAAGCAA
TCAAAATCAAGAATCACAAGCGTTACACCGCAACGATGCCACGAAAGAAA
GTTCCACAGGAAGGAATTTTAGACATGTCTGAAGCAGGTCCATCATCACA
AAGTCAATCAATACCAAAGAGTCAAAGCCAACCCAAAAAGAGAATATCAA
ATGCTTCAGAAAAAGTGAATGTCAATAACccagattttaaaagaaagGTA
TCGGAAATGGTGAGATATCTCCTCTTTGCAGACCGTAAAAAGAATGGCAT
CAAAAGAGCAGACATcatcaaaaatgttttgaaggAAAACCCAAAATGGT
TTGCCAAAGTCTTCGAAGAAGCATCACTCAAGATTAATCAGGTCTTTGGT
CTCGATGTGGTTTCGTTAGAGACGGAGAAAAAAGACAAATCAAAAGGATA
CACTTTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTG
TCGTAAGCTGGTAGGTGATCAGCCTTTTGATAACTCTAAGGACACACTTT
GATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAA
GCTGGGGCGAGGAGTCACAAGAGATGGCGTTACTTCTGATCATCTTGAGT
TTAATTTTCATGAACGATGGCCCACTTACCGAAGcatCGTTATGGTTCAC
CCTGAAGAAGATTGGTGTATACAAAGAAAGAAAACATCGTGTGTTTGGAG
ATGTCAATAAGTTGGTCAATAATGATTTCATCAAGGTCTtTTATTTGACG
AGACACAAAGAGATAAGTGCTGATGGACCATCGTTCACTTATTCGATAGG
TCCTCGTGCCGCAAAAGAAATCAGTAAACGAAAAATCCTGACTTTTGTTT
CACAGgtGTACGGATATGACGACATCAAGAAATGGAAAAACCAATACGAA
ATcgttgaagaagaagaaacgcATGCTAACCAATCACAAATGGATGTGGA
TAGTGATTAACCAATCAAATGAAAGTATTTGGTGACCTTTGTCACGAAGC
CACACGATCGATTCATCCCTTGAAAGGTCTCTTGTTATTGAACACTAGTT
ATTTGGTGAATACACTAGAAGGTGAATTTCGTTTTGATATTCATTCGACg
aagatatttcaaaattgatattGATTCACACCCTATAAACTTCAGAAGGA
GAGAGTCACGAAGTTGTTAAATGAAACATTCGATTCTT
Run BLAST on NCBI

transcript from alignment at sc0000349:3573..20657+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020094 ID=TCONS_00020094|Name=TCONS_00020094|organism=Clytia hemisphaerica|type=transcript|length=17085bp|location=Sequence derived from alignment at sc0000349:3573..20657+ (Clytia hemisphaerica)
GGGAAAGTTGTGACAATTTTTTCGAAAGCACATGCTTCTTCATTTCACCA CGAAACTTTCCCAAATCCTGACATTACTTTTAAGCATTCATATAAAGCAA TCAAAATCAAGAATCACAAGCGTTACACCGCAACGATGCCACGAAAGAAA GTTCCACAGGTAGCTATTCTTCTCTTTTCTTCACATATAATTTATCATAC TGAACTGGAGGCAAACCTTGACTCCGTTCCCTGCgtcgtattatcagctt ttttttatGTAAACTGATAGTGCTTGATAATGCCCGGCATTGTCTGATTT TCGAACGCATAAGCTTACATAATTTGATTTGTTCCTGGATTTGGaaccat tgcattgcagtgtagttttgtaacgtcagatttttttatgacgtatatAT TGTTTTGAGAGAAGTCCCTCCTCTGgctctgagagggggaactcaCATCA GCCagcaccagggtattctctggcgtcaatcagtaacatAAATAAAGCCT AAACTTTAACATCCTTACAAAAgctgtctttttgatttcccaaacatttg ttTCAAGTGttcacaataatttatgtatatATATAATTGCTCTTTCAAAA CTCTAAAACAATTCGGGGGTAAGTAGAGAAGCAACACtgcagattattcg taaagtaaagaaatatctattggcattgacaatcagatataatatattac attatattccTTAAttataaaatcatcaaaaattcattttgcattCGTTa tcgtgaaaaataaaaataaaaatatgatgaattaatattacattaCTGTC TTTTAGTGATACTTACttcgtttttgattttgtactttATGGTTCATCCA ATTCGTGGAATTCGATTATTGGCCATTACTGATACACTGTTGTGGAATCA GCTCTCTGAAGTTGAAATAATTAGGAAGCAGTGGTTCGTTTGGCAGTGTA TTGAGGAATTGGTCAAGATGttgtttaaaagtttgtttggtACATTTTGT GAGGTTTCGAAGGGATTTTGGCAGAGCATTAAAAAGTCTTGGTCCTTCCT GTGAGAGACAATCCCTCCAAATATATTTATGCTTGACATTAACAGCTTTT AAATTACATTTTCTACCCAGTCTCTGGTTTGTGTAGGAATGCACATCGCC TGCGTCATTGCTTAGTTGAAGTTTGGGGTGATATCTTCtagtatttctat ttctatttggttgagttgcaggaggctttagaggcctattctcgcaacta tagacgcttactaatgagcgtaccatcagcaccttgaactgactacccaa ttcccctcacatggcatgggttgacccgggcaaaggagcgttcacttgcc aagtgaactgtcgtgagtgggaatcgtaccctggcctcctgcacagaagc caaggtcaaCTACCACAATACCACGGCACCTATAGTATGCACCATGTTTA GATTATTCTGTACCTTTCTCTTATTCTTTAAAGGCTGTACATTTTTAGTT GACTCGATTTTTCCCAATACTGTAATTCAAGTTGAAGGAAATCCtgttca aaaatgatttttgcagCAGCTCCAATTGTTGGATGAAGCATCGCTTTGGA GCAGTAGTCAAAGTACAGAATAGCAAGTGACTTCCAAAGGGTTAGCATTA CATCAGTGTCCCGTGTCTTGAAGGTTCGGAATATCCATGAGCTGATGGCT TTGACTTTGCTGATTTGATTTTGGATGTGTTGACTGTAGCTCATATCNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNATATCCACATCCAAAGTGACTCCAAGGTCTT TGACTTGGTTTTTGGTTTCAATTTGGTCCTGGGTATCAGAATAATAAACT GAATTTGGTTTCAGCTCTTCATCTTTCCCATTTAACACATACGTTCGAAT ATCAGTCCATTGAGTTGCATGCTATTAATCTCTGACCATTTGTATACTCT ATCGAGGTCATTTTGAAGAAGCTGAACATCATCTTGACTGGACACTTCTT TCAGCAGTCTTGTATCGTCCGCAAATGAGGACAGCACTGCATGATAAATA TCTTCATCAATATCCTGAATCATCACAAGAAACAGGAGGGGACCCAGTAC AGAACCTTGTGGCACCCCAGATAAAACATCTGCACTTTTGGAAACCCTTG TGTTGACTGAGACTCTCTGTGTTCTCTTTGTTAGGAAAGATTTAATCCAG CAGAGAAGTTTTCCACAAATACCATTTCTTTCAAGTTTATGCAGAAGTAT TGAGTGGTCAACCAGATCGACTGCTTTACTAAAGTCAAGGTAGATAACAA CATCTACGTTCTCGCCATTTTCTATATGATGAAACGATCGTTCAGTGTGG GCAAGATCTTCCTGACCTAAATCCGTGTTGGTTAGTATTACATAGGTTGT TTCTTTCCAGGTGGTCTTGCATGTTTTTTCTTACgatcttttcaaaaact ttggttACATGTGATGTAAGAGCAACATGGCGGTAGTTTTCTGGTAATCC tcgatttctttttttaaatattgggGTGATATAACTTGTTTTAAGTATCT TTGGGTGAATCCTTTATCGAGAATATTCTGCCATATCAGCTTGAGTCGTT TTGCAAGCTGTGACTTGCTTTTAAGGAGAAACATAGCTTGAAAGCCATCT GGACCAGCAGCTGAGTTAGGAGAGAGGGTTTGTATTTCTCTAATGAAATC TTCCTCTGTGAAGGGTTGAGATTGGGGTTGTTATATTGGGGTTTTGGTGG TGTGAATACAGATGTATAGATGTATATTGGTCTTGAAGTATATTGGCCAT CTGAAGATTGTTGTCTGTTAGCTTATTTGTAGCAGGATCCAATGACGGTC CAATTTTAGGTTTGGtttgagaaaatctttttgcataAGAGTAGAAGAAC TTGGGGTTCACTTTGATTTTTTGAGATTGCATCTAGCTCTTGATTGCGCC TTTCGTTTGTATAactggttttaattttagctcaATATCGATCAGTTTTG ACCTTGTGTCCTTGTTGGGCTTTCTTTTCttcagtttctttctttttcgc ataaGAATACGACAATCGCGTGGAACAATCTTTTTCTTTAATGGCTTTCG AAGTGGAATGCTGTTTGAGGTGATAACGTCAATGCATTTCTTGATGAATA cacatagcttcagccaggtttctagctccccccaacaaattAAGGTTccc ccaacaatttagctccccccaaaaaattgccttgtgctaggtctcctaac acttcaggtcccaaaataaactaaaacaaaaacattattctcccgccccc gtagagagaagtcaataaaaaatatatgcgagtacagtactgataaatga aaactaaattttacttgttttaatatttatgtttatatacaaatcttttg ctttttggacctacctccgggtaccctggtggaggtcctttaaattaacc catgtccatttgtccgttcgtctgttgccagcttttctcaggattggctc aatagttttttctgattttttgcacaatgatgcaaaatggcaatgcccaa aatgtgacagattttcgaaaatgccggaaattgccctttttttggatttt cattggactttctccttataattggttgtttttacattcaaaaacattat taatagcaatgcccaccatcaagcatgtttcaattttcaataaaatagat ttttgaagccggaactattcaaaaatcgccggaacaacctattttcgccg gaaagacagtatttcttgagtttctcgagctgtactttatatttttttat gaaattctgtacactgatacaaaatggcaatacctaaaatgtgacggagc tagatttttggaaaacattttttccggccgaaaatgctggaaatatgccg aaaaaaccgtttttttgacattttctcaaattttcgtccttaattttctc tgattttttgcagaatgatgcgtagacgcaatgctcaaaacatgaccaag ttcgatttttgagaagatgttttttccggccaaaaaagccggaaatttcc atttttgcagattttcattggattttttcattggattttttcgtttcatg tctttgttttttttcaaacaaaaacatcatttataagaatgtccacgatt aagcatggttcaattttcaatgaaactGATTTTGGTACAGGAACTTTCTa aaaatcgccagaacagccgagaatcgctggattccatgaatttctcgagt tgttctcgtcttattctgcattttcatactattgttcttatttttcaatt gtctcattacatcaatcttcaggtaggtccattcagcatgtagcttgtta tatttgatttaatagtaagataagagatcttttgaaattagctgaacagc ccccagagtctcagtcagatcatctaggctgcccccaacaatctaggtcc ccccaaatattttggtaattttagcccccaggctctttaaaggccaaaat atttcttagccccccccccaaaaaaaaNGGTTGTCGTTGAGAATAACATT TGGTGAAAGTGGGATTCGTGGCATTGAGCAGTCCCTTGGAATTGCAGGGA GGGACCTTCGCCGTCGCCGTTGAGAGGGTAGTGAACTGACTGATGAGAGG TCAGTAATACTTTTGGTAGGTGAGGGTGCAGGTGTTTGTTTGGGAGAGAT CATGACAATTGTGGTGTCAGGTGTTGTGATGGTTTGTGTAGGTGTTTCGG AGCTACTTTTGACATTATTGACGCTGGTATTTGAAGCTTTGGTTCTTTTG TGTAGAAAGTGGATTGTATTTTCTTGACACTGTTAACAAAGGTAAATCAT ACCAGGTATCTGATATATCAAGTCTCTCAATACTTCATCTTGTTCAATCA AGTTCATGCTCTTTAATAAGTTTAGATAGCACGGTTGGTGGACTTCTTGT CCGTAGGAGCCGCATATTAGGAGTGAGCTGTCATGTATTTTAATTCTGTA TGACTGGTTGCATATTTGGCATATATCTGAAAAAAGCTCTGTATAACCAC ACATAATTTTTCAATTGCTTCGTCTTTTTTCGTAATATTGATGGTTTTCG ACAGGAAATTCAATGTTTCCATAATGGGATCCTTTCGGTATGATTCAGTG CTGtaaataacggccggtgaccggtaattaccggtcattttgtagtttct accggtcattctgaggctcagtttttcattttgtccggttaaaatttgaa gattagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNTCACATACTACAAAATTTTCTAAGATGGTTCCACCAGACCCCC TGCTCGTTACACTCGAaaaattaccggccaactgaaatttccttatttgc agcactgtgaTTTCAATAATTTTATGCTGTCTTTTGTTGGCTTTTCTGGA TCGTAAAGTCTGATGCAGTTTCTAATGGTTTCATTGTTGGCCTCTTCCGC TAGTTCAGCAAGTACCTGCTTCCAACTGTTGATGAGTCCGACTGATACCA CATTCGATCTAATCTTGTCGAATCGCAGAAAGTCCGAAAATGTTCTCAAT ACATGGAAAATAACTAGTACATCATTCAGGTAAAAAGTTCTCTTACAAAC ATGTTGATGCATTTTACATAAAAATCTTGCTAgttaaaacaattaaaatt agaaaatgttcaCTAGagaataaaacaataaaatcaataaaatgcTTTGA AtaataaacaatagaaaaattgcAGGACATGAGAAGGTAATTAATGAAAA TCCCAATAAAAAAgcctttcttcttcttctatttcttctattttttctAT TCTACTTCTATTTGATCTTTCGTTTTATAGGAAGGAATTTTAGACATGTC TGAAGCAGGTCCATCATCACAAAGTCAATCAATACCAAAGAGTCAAAGCC AACCCAAAAAGAGAATGTAAGAATCAGTCATGATTATATCTTCAGTcatt atttcattgttttggaTCAAAAAGACTTGTACTGCAATGGGAGTCTGTTA AATTGCGCGCTTGTATGCCTTCTAAAAAGTGGCGCTCCAGCGCGCCTGCA CTCCTTAATCTTTTTCTGCGCCTTTATTTTTTTACCCGTCTCTGATTTAA CAAGTGTCTtgaacaggggggggggtcggtagtaaaatctcagacataat gacgtttactacggtggtggtgtgatgaaaaatcgaaaaaaaattttact ccccagggtagttaaatactaaaatgagtggtatctatgtgttaaatgtt gaaaagattttactacctgggtagttaaaactggtaaaattagcaaattt tagatatttttgtaattcttttaattttttgggtgacttttctgaaaaaa tctgaaattttttatatttttgaaaaaattttctgttggaaagttgtttg ctacaaacaaaaaattctcgaaattttttgtcaatataaaaaagacttta cttctaagggcaaaacattaatttttgcactaagtgaaaaatgtgtcaca gaaataatcattttttagctttttttgtaaaatcagtcggaaaagcaacc aaaaagaGATGACaaatgacaaattgtcccaaaaacttttactaccaggg tagcaaaatacctcttccaagagtctgggtggtggtatgtaaaaatttgt aaaaatccttttaataCTCATATATATGTCTAAGACCGAACCCCCCCTGT cttgaaaagtttctaaatgCCAGTATAATTTGTTGCTTTTTCTTGGTtat ttgaatggaaaaaattggacaTACTTTTGGGGATAAATTTTAGACTTTTC TCCAAATCATTGGAAATAATGtgctaaattttcatttaaaaaattttaac gaAATTACAATAAGGTTGGGTATCCAGGAGCAGGAGCTATAAACAAACCT CTAATTCCTTCTGGTTCAGGAAATTATGACGTTTAAAGTTTGGTCTAGct cattttaccaaaaaagcCCCCAAAAAGGGGCCCTGGCGCACAAAGGGTTA AAATGTTTTCAcccttaaggggattaattttcgcggggattatatttcgc gaatttcgcgagtttttccgaaattcgcgaaatataatccccgcgaaaat tttaaaaacctttggattcgcgaaattcgcaaaatataatcctcgcgaaa attaagttttttagacataatttccctttgttttcagaaaaattataCCT ATTAAAGACATATCAATCGGTACGACAGAGAGTTTTCACCAACAAAGCTT GTTATATCTTTAGACAAAAGCAAGTTTTTTATTAGTCTACTGTTcgattt tttagttttgagCTTTCGAAAAAGCCCACTTCTCGCgaaactcgcgaaat ttaatcctcgcaaaaatttagaattcccgtcttcgcgaaaataagtcccg cgaaaattaaattatttcgcgaaaaaattgtctcgcgaaaataagttgcc gcgaaaattaatccccttaaggtatttAAATTCTGGCGTGCTTATAGATA ATGCTGCATGCAGTTTTGCATATCAAAATTGTAAATCAAAGAATAGAATC AAATTTGAACAAATAATAAAATACTAACTCGTAAAGTCtgaatcaaaata tttcttatgacatttacaaaatcaataacaagatcgaaatacaaaagaaa tgacaGCACCGAGgtttgctttaaaaattaaaatgactAGTCGAAAAAAT AACACAAGTTACTCGGAACCATTTAGTTCTTTTCTACCGGGTGTctcaca aaagattttcaggttTGGCGGCCTCTTGGAGCCAAACAGTTGATGTTCTA AgaattgtttttcatttcattagaAAGAGGAaagtctaacttaaattttg aggtataacttttaaaatttggtTCAGTATTTACCAagttaaaagctttt tttttaattaacttttgaaaatgtgtaaaaacacattaacaaagaaaaaa gggGGCTCAaatttaagcatttttttcaaaaatagaaattttttcaactt taacAATGGTTACATTTCAAGCATTTTATTCGtaaaatagaaattaaaaa aaaggaaatccagaaaaattcgacaatttttcaaaaaacaaattgtcaaa agctttaaaaaaggCCTAATTTATTCtgctttttgacgtgtttttataca ttttcaaatatgaatttttttctttaaaagtttgTAACTGGATTAACGTG TAAAAAATTATAAGACGCGCAAAAATTATAAGGCGCGCAAAAATTAGAAG ACTCGTGCGATATACTTTGTTCAAACCACAGCACAAGCACTCCCAGCCAG GAATGGACTTTTTACCTTTTGTGAATTAGCTGTCATCTTTGTTCCGGATa cgttgttattattattatttaaggggccatatttttcattgttagaaatt tttattatacaattttattttattgaaagaaaacttttaagtTTTACTTG GCTCTGGTATCTTGTTTGTTTATCATCGAGCACTATTCAATATAATTTCA TGACAATGATTTATACAATTTTATTATGGTAATTTATTTTAGATCAAATG CTTCAGAAAAAGTGAATGTCAATAACccagattttaaaagaaaggtAAAG TATTTAAAGTACCAGCCACAACagaaaaaatactttcaaatcaattcaat cTTGACTACAGGGAGTTGGTATTGGGGATTACACCCCGTCTGATGTAGAT TTTCAGCAAAATTTGGTCTCTTTCTGATTTCTACCCTGGAaagttttgct cttttttagGTATCGGAAATGGTGAGATATCTCCTCTTTGCAGACCGTAA AAAGAATGGCATCAAAAGAGCAGGTGACATCATCTTTgcacaattatttt taaaaaatacaccttttcgaccgtattTGCGCGGTctggcgcgtgccact taattatttaattatccccctaaactcgatccaatccttttttgacacat ttttctattgtctataggtgcgaaaaaaggactgggacggttttagtggg ataaagtggacaaatagatgcccgcgcggcaattggcggctacggtcgaa aaggtgtattaaaatTTTTGCTTGTGTTCAAATAAGCTAATTAGttattg ttttcttgttttttaatCTTTCACAAGTGATAGTGATGGTGATAGATAAG CTCtgcttcattttcatttttcatcttgcAGACATcatcaaaaatgtttt gaaggAAAACCCAAAATGGTTTGCCAAAGTCTTCGAAGAAGCATCACTCA AGATTAATCAGGTTCTTTTTAATCACTTTCTTGTTCTTATTTGATCTATA CTTATTAGTTAATTTGTACACTGCTGTTGTTTTTTACTCTATTTTCGTAC CTGTATGTATGTTGTTATGTGAAATTTAAAAACTTACCTGAAAAAGACAA AGTTTGAAGCCTTCTTTCTAATGACACCTTCCGAAAAACAGAGGAAGAAA ATTTCCCCTAAAAAAAGAGATAACAAGTTAGGTATGTCCCTTCGAACATG ATTTTCCTGATTAGACTTCTTCCAAAACTTTTCAGGCTTCAAACCTTTAT ATAGACAAAGAAGTtaccttaattttttttgttttcttaaaattagccaa caaactacacgttttttttataagaacaaactatataagaacataaggct ttgaggcccaaaaatttaagaacattctaagaacatactaaggctttgga gacttaaaaacatgcaatttcttaagaaattacatcaaaatgctcaaaaa atactgaaaataagaacatttttaggtttcaaatcaaaaaaactaagaac accCAAAGGCtccgaaaatttttgacgttcttataaaaaaaaaacgtgta tctacAATAAATCTCTACAAATTTCCACTTTATTCAGGTCTTTGGTCTCG ATGTGGTTTCGTTAGAGACGGAGAAAAAAGACAAATCAAAAGGATACACT TTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTGTCGT AAGCTGGTAGGTGATCAGCCTTTTGATAACTCTAAGGACACACTTTGATC AGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAAGCTG GTAGGTGATTAGCCTTTTGATAACTCTAAGGATACACTTTGATCAGCGCT CTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAAGCTGGTAAGT GATCAGCCTTTTGATAACTCTAAGGATACACTTTGATCAGCGCTCTGGAT GATGATATCATACAAAGTGATAGTAATGTCGTAAGCTGGTAGGTGATCAG CCTTTTGATAACTCTAAGGATACACTTTGATCAGCGCTTTGGATGATGAT ATCATACAAAGTGATAGTACTGTCGTAAGCTGGTAGGCATTTAGCCTTTT GATAGCTCTACTAAAACGTTTTCAGGCCAAAGGTCCTTGTACCAAAATAA CTTACCGTTCATTTGTAATTCAAAAGGGGATTGAGACTTACTTCGAATAA CCGGAGTTTGATTACCTATTTTTTCTGCTGAAAGTTAAACTAAACCCTCT TTTGGGTTTAGGTTTTGATGTTCACCAAAAGAATTAGATTATGTGGTTTA AATTGAACGTCATAAACACAAAGTTTTGCATAACCCATTTAAAGGAAAGG TATTTTCCAAATAAGGGAATGGTACTACTCCACCACGAAACATTTTGTTT TCAGTCGATGATTTGCCGTAAAGCATAGCTTCGAATAGCTTAGTGTGATT ACGCCCATATACGGCTCCTCAGGGATTACGAATCGCTTCGAATACTCGAA ATTTTAAATTAAGGTTCGATAACTGAGTGAGTCATAAAATCAAATCTAAG GGGAAAGCCATTAACTTCAAATAGTTGAAAATTTCGAATAAGAGGGGACT CCAATAGCCGGGAGCCTACGATGCTCTCTACAAACCAAAATTAGATGAAA TTTTATGTATGAGCATTAGTGTGTTGCCAAAGTGttacccactgaccttt atataccctggacaaagcttctcaatcccagccaagcaaaatctttgatc ggagttttttgaaaattggtaccctaatgtcggcactNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgt accaattctaaaaaaactccaatcaaagatggcagatatagcttggtcca gggttatataaaagTCAGTGGTGTTACCGCttgttataaaataaaaagaa tggtACTACTTTGTGTAATCaatttgtttccttttttcttccagGGGCGA GGAGTCACAAGAGATGGCGTTACTTCTGATCATCTTGAGTTTAATTTTCA TGAACGATGGCCCACTTACCGAAGGTTGGTGTGTGCTTTGGTtctaaatt aaaatatttgccaaaaaatatcaaataaaaaagaagcatttacTCTATGC GGATTCTTAAAAGAGGTCTCGACAAGTTTGTGTGCCCCTTTCGTACGTGA TCGCgtaatcataattttttttttggcgtgatagTGTGGTAAAGATTTTG GTGTCATGTGAAATGGTGGTATGTATTCTAGTGAGCATGCTACCCTGTGC GTTTTCTACTTTATTGTATGAAAATTTCGTGGTATgaaaattttgcggtt tttcggcCTCGATCGCGAAACTGCGAAATTTTCATGCCGCAAAATTTTCA TGCTATaaagtagtctgaatcgcagacctctatagacaTACTTCCTATat ataagaaactcttttcgctagaggatgagcagaagcctatgcGTTTTCTT TCTTCGATGTTCCCGTATAAAATATCACGTAGtcatatttttttctccag catCGTTATGGTTCACCCTGAAGAAGATTGGTGTATACAAAGAAAGGTAC GTTGGTTAAAACAACTACGTATATTTAACGACGTATATTTAATGGGCTTG ATTTTGCTTTAAGAAACAATTTTATTGCTTTGGGATAATGATTGATTATC ATACCTCGACGAAAAGTTAGTTCCCTTTTAAGTACTTGAGACCTAATTCG AAGTGAGAGACGGCAAAAAGTCAATGGAAAGTGGTAGttcaaatctttgc ttgaaaaagattgaacgaagtcattgcattgacgtcaaaagaaggcatcg cattgactttagacagtcGACTTTCTGCCGACTTTCGTCAAAACTAGAGA AGGCAAGGCAGAAAGTCGACCGTCTAAACTCGTGCTGATTGGAAGGTGGT CAAAAGAGTGAATTTGTTTTTCAGAAAACATCGTGTGTTTGGAGATGTCA ATAAGTTGGTCAATAATGATTTCATCAAGGTCTtgtaagtttgaaaattt attgaatatttaaagTCACTCCTGTTTCTGCTTGTATGATGATGATTCCG TGAGTTTATTTTTGGACTTACCCCGGTCGAGGTCCTATAATAAATtcctt tgttcgttcgttcatttgttcgtctgttacaagcttttctcaagattggc tcattagtttttctgattttttgcacagtgatgcgtattagcaatgccaa AAATATGACCGAGTCAAATCTTCAAGGAAAAgttttttccggtcgaaaat gccggaaatatgccgggaatccccgtttttgcaaattttcattggatttt ttccttatatttctttgtttttttcacacaaaaacattattgataacaat gcccaccatcaagcgtGATTCAtatgtcaataaaactgatttttgcgacc agaactttctatttatttttttctctactccccttccctctccccctatc aacaatcaatggtgaaatttaatttgttatgcattttcgctaaacgcttt ATTTAAAactgattgtttttatttttctccttattgctatctagctttca tcatcaggttgGTCCATttagcatctagcttgttttacTTCGCTCTATAC TGGACCTCTGTCCacttctttttgaatgaaatacaCACTTCTGAATAAgt ttacacacttttttataggAAGAATAATTTACTTAAGTTACTTTTTTTAG CTTAATGAATTTACACAATTTTAATAAGACACAATACACAATAAGAAGAT ACACAATACACAATAAGAAGAAGAATTTTATTAGGACATGAAGTTTTTTA AAGcccaaaaacaaatcaaaaatgaaagaacAATCTCAGTCTCAGCAATT AAAAAGCTGATTTTAATCTccttttttaagccaaaatttCAGTTTAGCAA GCATATTAAGAGAATCTTAAGAttctctttattttcattagtgATTGACC AACCAACTTTTGAGCAGTGAGGAATTAAACAGAGATCTTGCAAGAATAAA TGAGTGGGCtcgtcaatggaagatgtcttttaatCCTGATCCCACAAAAC AAGCTGTGGAAGTTTACTTTTCCAAAAAGCTCTTACCAGCTAATGCTCCT GTTTTATCTTTCAATAATACTGACATAAGAACTAGTGAATGTCATCAGAA GCATCTAGGTCTTATCTTGGATTCCAAACTCTCATTCAGTCACCATTtag aggaaaaaataaaaaaggccaaCAAAGGTATTGGCCTCATTAACAGACTT CGCAAACATGTACCAAGAAAATCTCTGCTTACTTTATACAAATCTTACAT TAGACCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctttcgtggaacgtctcaa gaaaaactttattctgaACTTGGTCTCGAGAGTCTTGCTGATCGTCGATT TAGTAGGAGAATGATCTTCTTCTACAAAATCTTAAACAATTTAGCCCCCT CTTGTTTACGTAACTATTTACCAGCAAGACTTGCGGCACTGGGTAAtcta agaacaagaaatcctatttatcaacttaatattcgaactgagcgtttccg gaATTCTTTTTACCCATACTGCATAACACAGTGGAATATTCTAGCTGGTC GTATAAGAGATATGCCTTCAGTATCtaccttcaaaaaagcaatcctcGAG TTTCTAAGGCCCAAACCTTCTCCTGTTTTTGGAGCTCGTGACAANNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNGCCTTGCGGGGGGAtgagctatttattttttctgtg tttgtttttgtaagtagtatatgttcgtaagtgtaatgtagcttctcaaa tcatataaaaaaaataaaaaaaataaaaaatcttaagaacataCCAGTTA AAAATCCAGTAGAATCACGAAGAATAGCCTCGGTCAAAATTTCCTGGTTC TCGTTAAGAAAGCGTGTATTTCTCTCATACTGATTCAGATTGAGaagatt aaatttgattttgaaaattcaactttGTATTTTTTCAGTTATTTGACGAG ACACAAAGAGATAAGTGCTGATGGACCATCGTTCACTTATTCGATAGGTC CTCGTGCCGCAAAAGAAATCAGTAAACGAAAAATCCTGACTTTTGTTTCA CAGGTATCATTCATTCTATTCATCTCTTGAGAATATGGGTctaataccgg gtgacccacgcgAAACTCGGAACAGGTTTTGATGTCCCCAGACCGAATAA AATATCCTAGAGTGCTTTAAGTTTGGTTATctatactttttaatttttaa ttaaattttatcatttttgttgCAACCGGCGGGGTGTTCAAGGTGTTTTT TCAAAGAGTAAATATCGAAGCCGAGAACGGTTATTATGCCGGCTCTTCCA AAACTGGAGTTACTAAGATATTACTTCGATCTAAAGGCTTTAAAAACTGT CTATCTGTCTTTCGTCGAGAAGGGTGATTATGCCGGCTCTTCCAAAAGAG ATTTATTCACTTTAtccgatttttttctgctggAAGCTCGACAATCATAA ACAAATTTCGAAAGTCTGAAACCAATTTCGACACGTTTTGGAAGACCTCA CATAGTGACCGTTCCCGGCTTTCATAGAATGCGGTAACGGTAGGGATTAG GCCAATAAACACCTACGGAACAAACACGCAGCTTTAAATAAAAGGTGTTA GTGGTACATACCAGCGGTTCCCGGATCAAACCCccactccttccaatgtt ccgttcagttcacagatagccgagccggctggccgtgggacctgtgaaaa caatcgaacGACTTTTAAAAGTCCTAGACTACTGGGCTGtccacgtaaaa tatcaaaatatcaacTTAAACTAAAAAAAAGAAGCCTTTTCAGAGCCCAA AAAcctgggctccaaacattcgaaaaagctgcaaagtggaatagagatta ctgcgaaaaaaaaaacaaacgcaacgtctagtataggctactgAAAACTG CGAAAGTGACTTCCTTTAATGCGTTTAAAGTtgtgttctttattttcaaa aggtGTACGGATATGACGACATCAAGAAATGGAAAAACCAATACGAAATc gttgaagaagaagaaacgcATGCTAACCAATCACAAATGGATGTGGATAG TGATTAACCAATCAAATGAAAGTATTTGGTGACCTTTGTCACGAAGCCAC ACGATCGATTCATCCCTTGAAAGGTCTCTTGTTATTGAACACTAGTTATT TGGTGAATACACTAGAAGGTGAATTTCGTTTTGATATTCATTCGACgaag atatttcaaaattgatattGATTCACACCCTATAAACTTCAGAAGGAGAG AGTCACGAAGTTGTTAAATGAAACATTCGATTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011297XLOC_011297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020094-exon-sc0000349-1491911889:3573..3731TCONS_00020094-exon-sc0000349-1491911889:3573..3731Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:3573..3731TCONS_00020094-exon-sc0000349-1510915933:3573..3731Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:3573..3731TCONS_00020094-exon-sc0000349-1575043694:3573..3731Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:9953..10038TCONS_00020094-exon-sc0000349-1491911889:9953..10038Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:9953..10038TCONS_00020094-exon-sc0000349-1510915933:9953..10038Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:9953..10038TCONS_00020094-exon-sc0000349-1575043694:9953..10038Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:12665..12716TCONS_00020094-exon-sc0000349-1491911889:12665..12716Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:12665..12716TCONS_00020094-exon-sc0000349-1510915933:12665..12716Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:12665..12716TCONS_00020094-exon-sc0000349-1575043694:12665..12716Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:12882..12945TCONS_00020094-exon-sc0000349-1491911889:12882..12945Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:12882..12945TCONS_00020094-exon-sc0000349-1510915933:12882..12945Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:12882..12945TCONS_00020094-exon-sc0000349-1575043694:12882..12945Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:13304..13383TCONS_00020094-exon-sc0000349-1491911889:13304..13383Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:13304..13383TCONS_00020094-exon-sc0000349-1510915933:13304..13383Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:13304..13383TCONS_00020094-exon-sc0000349-1575043694:13304..13383Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:14010..14222TCONS_00020094-exon-sc0000349-1491911889:14010..14222Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:14010..14222TCONS_00020094-exon-sc0000349-1510915933:14010..14222Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:14010..14222TCONS_00020094-exon-sc0000349-1575043694:14010..14222Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:15617..15696TCONS_00020094-exon-sc0000349-1491911889:15617..15696Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:15617..15696TCONS_00020094-exon-sc0000349-1510915933:15617..15696Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:15617..15696TCONS_00020094-exon-sc0000349-1575043694:15617..15696Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:16173..16218TCONS_00020094-exon-sc0000349-1491911889:16173..16218Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:16173..16218TCONS_00020094-exon-sc0000349-1510915933:16173..16218Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:16173..16218TCONS_00020094-exon-sc0000349-1575043694:16173..16218Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:16597..16656TCONS_00020094-exon-sc0000349-1491911889:16597..16656Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:16597..16656TCONS_00020094-exon-sc0000349-1510915933:16597..16656Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:16597..16656TCONS_00020094-exon-sc0000349-1575043694:16597..16656Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:19311..19425TCONS_00020094-exon-sc0000349-1491911889:19311..19425Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:19311..19425TCONS_00020094-exon-sc0000349-1510915933:19311..19425Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:19311..19425TCONS_00020094-exon-sc0000349-1575043694:19311..19425Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:20325..20657TCONS_00020094-exon-sc0000349-1491911889:20325..20657Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:20325..20657TCONS_00020094-exon-sc0000349-1510915933:20325..20657Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:20325..20657TCONS_00020094-exon-sc0000349-1575043694:20325..20657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:3573..20657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17702 0.396064 1.3993 1.37442 0 0 0 0.468419 0.697368 0.434274 0 0.526377 0.284279 0.287986 0 0 0 0.32285 0 0 0.388088 0 0 0 0 0.377547 0 0 0 0
Blast
BLAST of TCONS_00020094 vs. Swiss-Prot (Human)
Match: TROP (Trophinin OS=Homo sapiens GN=TRO PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.127e-24
Identity = 44/128 (34.38%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  629 QSDSTVVSWGEESQEMALLLIILSLIFMNDGPLTEASLWFTLKKIGVYKERKHRVFGDVNKLVNNDFIKVFYLTRHKEISADGPSFTYSIGPRAAKEISKRKILTFVSQVYGYDDIKKWKNQY-EIVE 1009
            +S + ++   +++ ++ LL++ILS+IFMN    +EA +W  L+K+G+    +H +FG+V KL+ ++F+K  YL   +  ++  P + +  G R+  E SK K+L F  +V   D  K W  QY E VE
Sbjct:  518 ESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDP-KDWAVQYREAVE 644          

HSP 2 Score: 48.1358 bits (113), Expect = 2.127e-24
Identity = 22/76 (28.95%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  286 FKRKVSEMVRYLLFADRKKNGIKRADIIKNVLKENPKWFAKVFEEASLKINQVFGLDVVSLETEKKDKSKGYTLIS 513
             + + +++V+YLL  D+ K  IKR+D++++V++E  ++F ++ E AS  + ++F +++  ++ +    S  Y LIS
Sbjct:  444 LQERANKLVKYLLVKDQTKIPIKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQ----SSLYILIS 515          
The following BLAST results are available for this feature:
BLAST of TCONS_00020094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TROP2.127e-2434.38Trophinin OS=Homo sapiens GN=TRO PE=1 SV=3[more]
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