TCONS_00020094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020094
Unique NameTCONS_00020094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020094 ID=TCONS_00020094|Name=TCONS_00020094|organism=Clytia hemisphaerica|type=transcript|length=1288bp
GGGAAAGTTGTGACAATTTTTTCGAAAGCACATGCTTCTTCATTTCACCA
CGAAACTTTCCCAAATCCTGACATTACTTTTAAGCATTCATATAAAGCAA
TCAAAATCAAGAATCACAAGCGTTACACCGCAACGATGCCACGAAAGAAA
GTTCCACAGGAAGGAATTTTAGACATGTCTGAAGCAGGTCCATCATCACA
AAGTCAATCAATACCAAAGAGTCAAAGCCAACCCAAAAAGAGAATATCAA
ATGCTTCAGAAAAAGTGAATGTCAATAACccagattttaaaagaaagGTA
TCGGAAATGGTGAGATATCTCCTCTTTGCAGACCGTAAAAAGAATGGCAT
CAAAAGAGCAGACATcatcaaaaatgttttgaaggAAAACCCAAAATGGT
TTGCCAAAGTCTTCGAAGAAGCATCACTCAAGATTAATCAGGTCTTTGGT
CTCGATGTGGTTTCGTTAGAGACGGAGAAAAAAGACAAATCAAAAGGATA
CACTTTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTG
TCGTAAGCTGGTAGGTGATCAGCCTTTTGATAACTCTAAGGACACACTTT
GATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAA
GCTGGGGCGAGGAGTCACAAGAGATGGCGTTACTTCTGATCATCTTGAGT
TTAATTTTCATGAACGATGGCCCACTTACCGAAGcatCGTTATGGTTCAC
CCTGAAGAAGATTGGTGTATACAAAGAAAGAAAACATCGTGTGTTTGGAG
ATGTCAATAAGTTGGTCAATAATGATTTCATCAAGGTCTtTTATTTGACG
AGACACAAAGAGATAAGTGCTGATGGACCATCGTTCACTTATTCGATAGG
TCCTCGTGCCGCAAAAGAAATCAGTAAACGAAAAATCCTGACTTTTGTTT
CACAGgtGTACGGATATGACGACATCAAGAAATGGAAAAACCAATACGAA
ATcgttgaagaagaagaaacgcATGCTAACCAATCACAAATGGATGTGGA
TAGTGATTAACCAATCAAATGAAAGTATTTGGTGACCTTTGTCACGAAGC
CACACGATCGATTCATCCCTTGAAAGGTCTCTTGTTATTGAACACTAGTT
ATTTGGTGAATACACTAGAAGGTGAATTTCGTTTTGATATTCATTCGACg
aagatatttcaaaattgatattGATTCACACCCTATAAACTTCAGAAGGA
GAGAGTCACGAAGTTGTTAAATGAAACATTCGATTCTT
Run BLAST on NCBI

transcript from alignment at sc0000349:3573..20657+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020094 ID=TCONS_00020094|Name=TCONS_00020094|organism=Clytia hemisphaerica|type=transcript|length=17085bp|location=Sequence derived from alignment at sc0000349:3573..20657+ (Clytia hemisphaerica)
GGGAAAGTTGTGACAATTTTTTCGAAAGCACATGCTTCTTCATTTCACCA
CGAAACTTTCCCAAATCCTGACATTACTTTTAAGCATTCATATAAAGCAA
TCAAAATCAAGAATCACAAGCGTTACACCGCAACGATGCCACGAAAGAAA
GTTCCACAGGTAGCTATTCTTCTCTTTTCTTCACATATAATTTATCATAC
TGAACTGGAGGCAAACCTTGACTCCGTTCCCTGCgtcgtattatcagctt
ttttttatGTAAACTGATAGTGCTTGATAATGCCCGGCATTGTCTGATTT
TCGAACGCATAAGCTTACATAATTTGATTTGTTCCTGGATTTGGaaccat
tgcattgcagtgtagttttgtaacgtcagatttttttatgacgtatatAT
TGTTTTGAGAGAAGTCCCTCCTCTGgctctgagagggggaactcaCATCA
GCCagcaccagggtattctctggcgtcaatcagtaacatAAATAAAGCCT
AAACTTTAACATCCTTACAAAAgctgtctttttgatttcccaaacatttg
ttTCAAGTGttcacaataatttatgtatatATATAATTGCTCTTTCAAAA
CTCTAAAACAATTCGGGGGTAAGTAGAGAAGCAACACtgcagattattcg
taaagtaaagaaatatctattggcattgacaatcagatataatatattac
attatattccTTAAttataaaatcatcaaaaattcattttgcattCGTTa
tcgtgaaaaataaaaataaaaatatgatgaattaatattacattaCTGTC
TTTTAGTGATACTTACttcgtttttgattttgtactttATGGTTCATCCA
ATTCGTGGAATTCGATTATTGGCCATTACTGATACACTGTTGTGGAATCA
GCTCTCTGAAGTTGAAATAATTAGGAAGCAGTGGTTCGTTTGGCAGTGTA
TTGAGGAATTGGTCAAGATGttgtttaaaagtttgtttggtACATTTTGT
GAGGTTTCGAAGGGATTTTGGCAGAGCATTAAAAAGTCTTGGTCCTTCCT
GTGAGAGACAATCCCTCCAAATATATTTATGCTTGACATTAACAGCTTTT
AAATTACATTTTCTACCCAGTCTCTGGTTTGTGTAGGAATGCACATCGCC
TGCGTCATTGCTTAGTTGAAGTTTGGGGTGATATCTTCtagtatttctat
ttctatttggttgagttgcaggaggctttagaggcctattctcgcaacta
tagacgcttactaatgagcgtaccatcagcaccttgaactgactacccaa
ttcccctcacatggcatgggttgacccgggcaaaggagcgttcacttgcc
aagtgaactgtcgtgagtgggaatcgtaccctggcctcctgcacagaagc
caaggtcaaCTACCACAATACCACGGCACCTATAGTATGCACCATGTTTA
GATTATTCTGTACCTTTCTCTTATTCTTTAAAGGCTGTACATTTTTAGTT
GACTCGATTTTTCCCAATACTGTAATTCAAGTTGAAGGAAATCCtgttca
aaaatgatttttgcagCAGCTCCAATTGTTGGATGAAGCATCGCTTTGGA
GCAGTAGTCAAAGTACAGAATAGCAAGTGACTTCCAAAGGGTTAGCATTA
CATCAGTGTCCCGTGTCTTGAAGGTTCGGAATATCCATGAGCTGATGGCT
TTGACTTTGCTGATTTGATTTTGGATGTGTTGACTGTAGCTCATATCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATATCCACATCCAAAGTGACTCCAAGGTCTT
TGACTTGGTTTTTGGTTTCAATTTGGTCCTGGGTATCAGAATAATAAACT
GAATTTGGTTTCAGCTCTTCATCTTTCCCATTTAACACATACGTTCGAAT
ATCAGTCCATTGAGTTGCATGCTATTAATCTCTGACCATTTGTATACTCT
ATCGAGGTCATTTTGAAGAAGCTGAACATCATCTTGACTGGACACTTCTT
TCAGCAGTCTTGTATCGTCCGCAAATGAGGACAGCACTGCATGATAAATA
TCTTCATCAATATCCTGAATCATCACAAGAAACAGGAGGGGACCCAGTAC
AGAACCTTGTGGCACCCCAGATAAAACATCTGCACTTTTGGAAACCCTTG
TGTTGACTGAGACTCTCTGTGTTCTCTTTGTTAGGAAAGATTTAATCCAG
CAGAGAAGTTTTCCACAAATACCATTTCTTTCAAGTTTATGCAGAAGTAT
TGAGTGGTCAACCAGATCGACTGCTTTACTAAAGTCAAGGTAGATAACAA
CATCTACGTTCTCGCCATTTTCTATATGATGAAACGATCGTTCAGTGTGG
GCAAGATCTTCCTGACCTAAATCCGTGTTGGTTAGTATTACATAGGTTGT
TTCTTTCCAGGTGGTCTTGCATGTTTTTTCTTACgatcttttcaaaaact
ttggttACATGTGATGTAAGAGCAACATGGCGGTAGTTTTCTGGTAATCC
tcgatttctttttttaaatattgggGTGATATAACTTGTTTTAAGTATCT
TTGGGTGAATCCTTTATCGAGAATATTCTGCCATATCAGCTTGAGTCGTT
TTGCAAGCTGTGACTTGCTTTTAAGGAGAAACATAGCTTGAAAGCCATCT
GGACCAGCAGCTGAGTTAGGAGAGAGGGTTTGTATTTCTCTAATGAAATC
TTCCTCTGTGAAGGGTTGAGATTGGGGTTGTTATATTGGGGTTTTGGTGG
TGTGAATACAGATGTATAGATGTATATTGGTCTTGAAGTATATTGGCCAT
CTGAAGATTGTTGTCTGTTAGCTTATTTGTAGCAGGATCCAATGACGGTC
CAATTTTAGGTTTGGtttgagaaaatctttttgcataAGAGTAGAAGAAC
TTGGGGTTCACTTTGATTTTTTGAGATTGCATCTAGCTCTTGATTGCGCC
TTTCGTTTGTATAactggttttaattttagctcaATATCGATCAGTTTTG
ACCTTGTGTCCTTGTTGGGCTTTCTTTTCttcagtttctttctttttcgc
ataaGAATACGACAATCGCGTGGAACAATCTTTTTCTTTAATGGCTTTCG
AAGTGGAATGCTGTTTGAGGTGATAACGTCAATGCATTTCTTGATGAATA
cacatagcttcagccaggtttctagctccccccaacaaattAAGGTTccc
ccaacaatttagctccccccaaaaaattgccttgtgctaggtctcctaac
acttcaggtcccaaaataaactaaaacaaaaacattattctcccgccccc
gtagagagaagtcaataaaaaatatatgcgagtacagtactgataaatga
aaactaaattttacttgttttaatatttatgtttatatacaaatcttttg
ctttttggacctacctccgggtaccctggtggaggtcctttaaattaacc
catgtccatttgtccgttcgtctgttgccagcttttctcaggattggctc
aatagttttttctgattttttgcacaatgatgcaaaatggcaatgcccaa
aatgtgacagattttcgaaaatgccggaaattgccctttttttggatttt
cattggactttctccttataattggttgtttttacattcaaaaacattat
taatagcaatgcccaccatcaagcatgtttcaattttcaataaaatagat
ttttgaagccggaactattcaaaaatcgccggaacaacctattttcgccg
gaaagacagtatttcttgagtttctcgagctgtactttatatttttttat
gaaattctgtacactgatacaaaatggcaatacctaaaatgtgacggagc
tagatttttggaaaacattttttccggccgaaaatgctggaaatatgccg
aaaaaaccgtttttttgacattttctcaaattttcgtccttaattttctc
tgattttttgcagaatgatgcgtagacgcaatgctcaaaacatgaccaag
ttcgatttttgagaagatgttttttccggccaaaaaagccggaaatttcc
atttttgcagattttcattggattttttcattggattttttcgtttcatg
tctttgttttttttcaaacaaaaacatcatttataagaatgtccacgatt
aagcatggttcaattttcaatgaaactGATTTTGGTACAGGAACTTTCTa
aaaatcgccagaacagccgagaatcgctggattccatgaatttctcgagt
tgttctcgtcttattctgcattttcatactattgttcttatttttcaatt
gtctcattacatcaatcttcaggtaggtccattcagcatgtagcttgtta
tatttgatttaatagtaagataagagatcttttgaaattagctgaacagc
ccccagagtctcagtcagatcatctaggctgcccccaacaatctaggtcc
ccccaaatattttggtaattttagcccccaggctctttaaaggccaaaat
atttcttagccccccccccaaaaaaaaNGGTTGTCGTTGAGAATAACATT
TGGTGAAAGTGGGATTCGTGGCATTGAGCAGTCCCTTGGAATTGCAGGGA
GGGACCTTCGCCGTCGCCGTTGAGAGGGTAGTGAACTGACTGATGAGAGG
TCAGTAATACTTTTGGTAGGTGAGGGTGCAGGTGTTTGTTTGGGAGAGAT
CATGACAATTGTGGTGTCAGGTGTTGTGATGGTTTGTGTAGGTGTTTCGG
AGCTACTTTTGACATTATTGACGCTGGTATTTGAAGCTTTGGTTCTTTTG
TGTAGAAAGTGGATTGTATTTTCTTGACACTGTTAACAAAGGTAAATCAT
ACCAGGTATCTGATATATCAAGTCTCTCAATACTTCATCTTGTTCAATCA
AGTTCATGCTCTTTAATAAGTTTAGATAGCACGGTTGGTGGACTTCTTGT
CCGTAGGAGCCGCATATTAGGAGTGAGCTGTCATGTATTTTAATTCTGTA
TGACTGGTTGCATATTTGGCATATATCTGAAAAAAGCTCTGTATAACCAC
ACATAATTTTTCAATTGCTTCGTCTTTTTTCGTAATATTGATGGTTTTCG
ACAGGAAATTCAATGTTTCCATAATGGGATCCTTTCGGTATGATTCAGTG
CTGtaaataacggccggtgaccggtaattaccggtcattttgtagtttct
accggtcattctgaggctcagtttttcattttgtccggttaaaatttgaa
gattagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCACATACTACAAAATTTTCTAAGATGGTTCCACCAGACCCCC
TGCTCGTTACACTCGAaaaattaccggccaactgaaatttccttatttgc
agcactgtgaTTTCAATAATTTTATGCTGTCTTTTGTTGGCTTTTCTGGA
TCGTAAAGTCTGATGCAGTTTCTAATGGTTTCATTGTTGGCCTCTTCCGC
TAGTTCAGCAAGTACCTGCTTCCAACTGTTGATGAGTCCGACTGATACCA
CATTCGATCTAATCTTGTCGAATCGCAGAAAGTCCGAAAATGTTCTCAAT
ACATGGAAAATAACTAGTACATCATTCAGGTAAAAAGTTCTCTTACAAAC
ATGTTGATGCATTTTACATAAAAATCTTGCTAgttaaaacaattaaaatt
agaaaatgttcaCTAGagaataaaacaataaaatcaataaaatgcTTTGA
AtaataaacaatagaaaaattgcAGGACATGAGAAGGTAATTAATGAAAA
TCCCAATAAAAAAgcctttcttcttcttctatttcttctattttttctAT
TCTACTTCTATTTGATCTTTCGTTTTATAGGAAGGAATTTTAGACATGTC
TGAAGCAGGTCCATCATCACAAAGTCAATCAATACCAAAGAGTCAAAGCC
AACCCAAAAAGAGAATGTAAGAATCAGTCATGATTATATCTTCAGTcatt
atttcattgttttggaTCAAAAAGACTTGTACTGCAATGGGAGTCTGTTA
AATTGCGCGCTTGTATGCCTTCTAAAAAGTGGCGCTCCAGCGCGCCTGCA
CTCCTTAATCTTTTTCTGCGCCTTTATTTTTTTACCCGTCTCTGATTTAA
CAAGTGTCTtgaacaggggggggggtcggtagtaaaatctcagacataat
gacgtttactacggtggtggtgtgatgaaaaatcgaaaaaaaattttact
ccccagggtagttaaatactaaaatgagtggtatctatgtgttaaatgtt
gaaaagattttactacctgggtagttaaaactggtaaaattagcaaattt
tagatatttttgtaattcttttaattttttgggtgacttttctgaaaaaa
tctgaaattttttatatttttgaaaaaattttctgttggaaagttgtttg
ctacaaacaaaaaattctcgaaattttttgtcaatataaaaaagacttta
cttctaagggcaaaacattaatttttgcactaagtgaaaaatgtgtcaca
gaaataatcattttttagctttttttgtaaaatcagtcggaaaagcaacc
aaaaagaGATGACaaatgacaaattgtcccaaaaacttttactaccaggg
tagcaaaatacctcttccaagagtctgggtggtggtatgtaaaaatttgt
aaaaatccttttaataCTCATATATATGTCTAAGACCGAACCCCCCCTGT
cttgaaaagtttctaaatgCCAGTATAATTTGTTGCTTTTTCTTGGTtat
ttgaatggaaaaaattggacaTACTTTTGGGGATAAATTTTAGACTTTTC
TCCAAATCATTGGAAATAATGtgctaaattttcatttaaaaaattttaac
gaAATTACAATAAGGTTGGGTATCCAGGAGCAGGAGCTATAAACAAACCT
CTAATTCCTTCTGGTTCAGGAAATTATGACGTTTAAAGTTTGGTCTAGct
cattttaccaaaaaagcCCCCAAAAAGGGGCCCTGGCGCACAAAGGGTTA
AAATGTTTTCAcccttaaggggattaattttcgcggggattatatttcgc
gaatttcgcgagtttttccgaaattcgcgaaatataatccccgcgaaaat
tttaaaaacctttggattcgcgaaattcgcaaaatataatcctcgcgaaa
attaagttttttagacataatttccctttgttttcagaaaaattataCCT
ATTAAAGACATATCAATCGGTACGACAGAGAGTTTTCACCAACAAAGCTT
GTTATATCTTTAGACAAAAGCAAGTTTTTTATTAGTCTACTGTTcgattt
tttagttttgagCTTTCGAAAAAGCCCACTTCTCGCgaaactcgcgaaat
ttaatcctcgcaaaaatttagaattcccgtcttcgcgaaaataagtcccg
cgaaaattaaattatttcgcgaaaaaattgtctcgcgaaaataagttgcc
gcgaaaattaatccccttaaggtatttAAATTCTGGCGTGCTTATAGATA
ATGCTGCATGCAGTTTTGCATATCAAAATTGTAAATCAAAGAATAGAATC
AAATTTGAACAAATAATAAAATACTAACTCGTAAAGTCtgaatcaaaata
tttcttatgacatttacaaaatcaataacaagatcgaaatacaaaagaaa
tgacaGCACCGAGgtttgctttaaaaattaaaatgactAGTCGAAAAAAT
AACACAAGTTACTCGGAACCATTTAGTTCTTTTCTACCGGGTGTctcaca
aaagattttcaggttTGGCGGCCTCTTGGAGCCAAACAGTTGATGTTCTA
AgaattgtttttcatttcattagaAAGAGGAaagtctaacttaaattttg
aggtataacttttaaaatttggtTCAGTATTTACCAagttaaaagctttt
tttttaattaacttttgaaaatgtgtaaaaacacattaacaaagaaaaaa
gggGGCTCAaatttaagcatttttttcaaaaatagaaattttttcaactt
taacAATGGTTACATTTCAAGCATTTTATTCGtaaaatagaaattaaaaa
aaaggaaatccagaaaaattcgacaatttttcaaaaaacaaattgtcaaa
agctttaaaaaaggCCTAATTTATTCtgctttttgacgtgtttttataca
ttttcaaatatgaatttttttctttaaaagtttgTAACTGGATTAACGTG
TAAAAAATTATAAGACGCGCAAAAATTATAAGGCGCGCAAAAATTAGAAG
ACTCGTGCGATATACTTTGTTCAAACCACAGCACAAGCACTCCCAGCCAG
GAATGGACTTTTTACCTTTTGTGAATTAGCTGTCATCTTTGTTCCGGATa
cgttgttattattattatttaaggggccatatttttcattgttagaaatt
tttattatacaattttattttattgaaagaaaacttttaagtTTTACTTG
GCTCTGGTATCTTGTTTGTTTATCATCGAGCACTATTCAATATAATTTCA
TGACAATGATTTATACAATTTTATTATGGTAATTTATTTTAGATCAAATG
CTTCAGAAAAAGTGAATGTCAATAACccagattttaaaagaaaggtAAAG
TATTTAAAGTACCAGCCACAACagaaaaaatactttcaaatcaattcaat
cTTGACTACAGGGAGTTGGTATTGGGGATTACACCCCGTCTGATGTAGAT
TTTCAGCAAAATTTGGTCTCTTTCTGATTTCTACCCTGGAaagttttgct
cttttttagGTATCGGAAATGGTGAGATATCTCCTCTTTGCAGACCGTAA
AAAGAATGGCATCAAAAGAGCAGGTGACATCATCTTTgcacaattatttt
taaaaaatacaccttttcgaccgtattTGCGCGGTctggcgcgtgccact
taattatttaattatccccctaaactcgatccaatccttttttgacacat
ttttctattgtctataggtgcgaaaaaaggactgggacggttttagtggg
ataaagtggacaaatagatgcccgcgcggcaattggcggctacggtcgaa
aaggtgtattaaaatTTTTGCTTGTGTTCAAATAAGCTAATTAGttattg
ttttcttgttttttaatCTTTCACAAGTGATAGTGATGGTGATAGATAAG
CTCtgcttcattttcatttttcatcttgcAGACATcatcaaaaatgtttt
gaaggAAAACCCAAAATGGTTTGCCAAAGTCTTCGAAGAAGCATCACTCA
AGATTAATCAGGTTCTTTTTAATCACTTTCTTGTTCTTATTTGATCTATA
CTTATTAGTTAATTTGTACACTGCTGTTGTTTTTTACTCTATTTTCGTAC
CTGTATGTATGTTGTTATGTGAAATTTAAAAACTTACCTGAAAAAGACAA
AGTTTGAAGCCTTCTTTCTAATGACACCTTCCGAAAAACAGAGGAAGAAA
ATTTCCCCTAAAAAAAGAGATAACAAGTTAGGTATGTCCCTTCGAACATG
ATTTTCCTGATTAGACTTCTTCCAAAACTTTTCAGGCTTCAAACCTTTAT
ATAGACAAAGAAGTtaccttaattttttttgttttcttaaaattagccaa
caaactacacgttttttttataagaacaaactatataagaacataaggct
ttgaggcccaaaaatttaagaacattctaagaacatactaaggctttgga
gacttaaaaacatgcaatttcttaagaaattacatcaaaatgctcaaaaa
atactgaaaataagaacatttttaggtttcaaatcaaaaaaactaagaac
accCAAAGGCtccgaaaatttttgacgttcttataaaaaaaaaacgtgta
tctacAATAAATCTCTACAAATTTCCACTTTATTCAGGTCTTTGGTCTCG
ATGTGGTTTCGTTAGAGACGGAGAAAAAAGACAAATCAAAAGGATACACT
TTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTGTCGT
AAGCTGGTAGGTGATCAGCCTTTTGATAACTCTAAGGACACACTTTGATC
AGCGCTCTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAAGCTG
GTAGGTGATTAGCCTTTTGATAACTCTAAGGATACACTTTGATCAGCGCT
CTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAAGCTGGTAAGT
GATCAGCCTTTTGATAACTCTAAGGATACACTTTGATCAGCGCTCTGGAT
GATGATATCATACAAAGTGATAGTAATGTCGTAAGCTGGTAGGTGATCAG
CCTTTTGATAACTCTAAGGATACACTTTGATCAGCGCTTTGGATGATGAT
ATCATACAAAGTGATAGTACTGTCGTAAGCTGGTAGGCATTTAGCCTTTT
GATAGCTCTACTAAAACGTTTTCAGGCCAAAGGTCCTTGTACCAAAATAA
CTTACCGTTCATTTGTAATTCAAAAGGGGATTGAGACTTACTTCGAATAA
CCGGAGTTTGATTACCTATTTTTTCTGCTGAAAGTTAAACTAAACCCTCT
TTTGGGTTTAGGTTTTGATGTTCACCAAAAGAATTAGATTATGTGGTTTA
AATTGAACGTCATAAACACAAAGTTTTGCATAACCCATTTAAAGGAAAGG
TATTTTCCAAATAAGGGAATGGTACTACTCCACCACGAAACATTTTGTTT
TCAGTCGATGATTTGCCGTAAAGCATAGCTTCGAATAGCTTAGTGTGATT
ACGCCCATATACGGCTCCTCAGGGATTACGAATCGCTTCGAATACTCGAA
ATTTTAAATTAAGGTTCGATAACTGAGTGAGTCATAAAATCAAATCTAAG
GGGAAAGCCATTAACTTCAAATAGTTGAAAATTTCGAATAAGAGGGGACT
CCAATAGCCGGGAGCCTACGATGCTCTCTACAAACCAAAATTAGATGAAA
TTTTATGTATGAGCATTAGTGTGTTGCCAAAGTGttacccactgaccttt
atataccctggacaaagcttctcaatcccagccaagcaaaatctttgatc
ggagttttttgaaaattggtaccctaatgtcggcactNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgt
accaattctaaaaaaactccaatcaaagatggcagatatagcttggtcca
gggttatataaaagTCAGTGGTGTTACCGCttgttataaaataaaaagaa
tggtACTACTTTGTGTAATCaatttgtttccttttttcttccagGGGCGA
GGAGTCACAAGAGATGGCGTTACTTCTGATCATCTTGAGTTTAATTTTCA
TGAACGATGGCCCACTTACCGAAGGTTGGTGTGTGCTTTGGTtctaaatt
aaaatatttgccaaaaaatatcaaataaaaaagaagcatttacTCTATGC
GGATTCTTAAAAGAGGTCTCGACAAGTTTGTGTGCCCCTTTCGTACGTGA
TCGCgtaatcataattttttttttggcgtgatagTGTGGTAAAGATTTTG
GTGTCATGTGAAATGGTGGTATGTATTCTAGTGAGCATGCTACCCTGTGC
GTTTTCTACTTTATTGTATGAAAATTTCGTGGTATgaaaattttgcggtt
tttcggcCTCGATCGCGAAACTGCGAAATTTTCATGCCGCAAAATTTTCA
TGCTATaaagtagtctgaatcgcagacctctatagacaTACTTCCTATat
ataagaaactcttttcgctagaggatgagcagaagcctatgcGTTTTCTT
TCTTCGATGTTCCCGTATAAAATATCACGTAGtcatatttttttctccag
catCGTTATGGTTCACCCTGAAGAAGATTGGTGTATACAAAGAAAGGTAC
GTTGGTTAAAACAACTACGTATATTTAACGACGTATATTTAATGGGCTTG
ATTTTGCTTTAAGAAACAATTTTATTGCTTTGGGATAATGATTGATTATC
ATACCTCGACGAAAAGTTAGTTCCCTTTTAAGTACTTGAGACCTAATTCG
AAGTGAGAGACGGCAAAAAGTCAATGGAAAGTGGTAGttcaaatctttgc
ttgaaaaagattgaacgaagtcattgcattgacgtcaaaagaaggcatcg
cattgactttagacagtcGACTTTCTGCCGACTTTCGTCAAAACTAGAGA
AGGCAAGGCAGAAAGTCGACCGTCTAAACTCGTGCTGATTGGAAGGTGGT
CAAAAGAGTGAATTTGTTTTTCAGAAAACATCGTGTGTTTGGAGATGTCA
ATAAGTTGGTCAATAATGATTTCATCAAGGTCTtgtaagtttgaaaattt
attgaatatttaaagTCACTCCTGTTTCTGCTTGTATGATGATGATTCCG
TGAGTTTATTTTTGGACTTACCCCGGTCGAGGTCCTATAATAAATtcctt
tgttcgttcgttcatttgttcgtctgttacaagcttttctcaagattggc
tcattagtttttctgattttttgcacagtgatgcgtattagcaatgccaa
AAATATGACCGAGTCAAATCTTCAAGGAAAAgttttttccggtcgaaaat
gccggaaatatgccgggaatccccgtttttgcaaattttcattggatttt
ttccttatatttctttgtttttttcacacaaaaacattattgataacaat
gcccaccatcaagcgtGATTCAtatgtcaataaaactgatttttgcgacc
agaactttctatttatttttttctctactccccttccctctccccctatc
aacaatcaatggtgaaatttaatttgttatgcattttcgctaaacgcttt
ATTTAAAactgattgtttttatttttctccttattgctatctagctttca
tcatcaggttgGTCCATttagcatctagcttgttttacTTCGCTCTATAC
TGGACCTCTGTCCacttctttttgaatgaaatacaCACTTCTGAATAAgt
ttacacacttttttataggAAGAATAATTTACTTAAGTTACTTTTTTTAG
CTTAATGAATTTACACAATTTTAATAAGACACAATACACAATAAGAAGAT
ACACAATACACAATAAGAAGAAGAATTTTATTAGGACATGAAGTTTTTTA
AAGcccaaaaacaaatcaaaaatgaaagaacAATCTCAGTCTCAGCAATT
AAAAAGCTGATTTTAATCTccttttttaagccaaaatttCAGTTTAGCAA
GCATATTAAGAGAATCTTAAGAttctctttattttcattagtgATTGACC
AACCAACTTTTGAGCAGTGAGGAATTAAACAGAGATCTTGCAAGAATAAA
TGAGTGGGCtcgtcaatggaagatgtcttttaatCCTGATCCCACAAAAC
AAGCTGTGGAAGTTTACTTTTCCAAAAAGCTCTTACCAGCTAATGCTCCT
GTTTTATCTTTCAATAATACTGACATAAGAACTAGTGAATGTCATCAGAA
GCATCTAGGTCTTATCTTGGATTCCAAACTCTCATTCAGTCACCATTtag
aggaaaaaataaaaaaggccaaCAAAGGTATTGGCCTCATTAACAGACTT
CGCAAACATGTACCAAGAAAATCTCTGCTTACTTTATACAAATCTTACAT
TAGACCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctttcgtggaacgtctcaa
gaaaaactttattctgaACTTGGTCTCGAGAGTCTTGCTGATCGTCGATT
TAGTAGGAGAATGATCTTCTTCTACAAAATCTTAAACAATTTAGCCCCCT
CTTGTTTACGTAACTATTTACCAGCAAGACTTGCGGCACTGGGTAAtcta
agaacaagaaatcctatttatcaacttaatattcgaactgagcgtttccg
gaATTCTTTTTACCCATACTGCATAACACAGTGGAATATTCTAGCTGGTC
GTATAAGAGATATGCCTTCAGTATCtaccttcaaaaaagcaatcctcGAG
TTTCTAAGGCCCAAACCTTCTCCTGTTTTTGGAGCTCGTGACAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGCCTTGCGGGGGGAtgagctatttattttttctgtg
tttgtttttgtaagtagtatatgttcgtaagtgtaatgtagcttctcaaa
tcatataaaaaaaataaaaaaaataaaaaatcttaagaacataCCAGTTA
AAAATCCAGTAGAATCACGAAGAATAGCCTCGGTCAAAATTTCCTGGTTC
TCGTTAAGAAAGCGTGTATTTCTCTCATACTGATTCAGATTGAGaagatt
aaatttgattttgaaaattcaactttGTATTTTTTCAGTTATTTGACGAG
ACACAAAGAGATAAGTGCTGATGGACCATCGTTCACTTATTCGATAGGTC
CTCGTGCCGCAAAAGAAATCAGTAAACGAAAAATCCTGACTTTTGTTTCA
CAGGTATCATTCATTCTATTCATCTCTTGAGAATATGGGTctaataccgg
gtgacccacgcgAAACTCGGAACAGGTTTTGATGTCCCCAGACCGAATAA
AATATCCTAGAGTGCTTTAAGTTTGGTTATctatactttttaatttttaa
ttaaattttatcatttttgttgCAACCGGCGGGGTGTTCAAGGTGTTTTT
TCAAAGAGTAAATATCGAAGCCGAGAACGGTTATTATGCCGGCTCTTCCA
AAACTGGAGTTACTAAGATATTACTTCGATCTAAAGGCTTTAAAAACTGT
CTATCTGTCTTTCGTCGAGAAGGGTGATTATGCCGGCTCTTCCAAAAGAG
ATTTATTCACTTTAtccgatttttttctgctggAAGCTCGACAATCATAA
ACAAATTTCGAAAGTCTGAAACCAATTTCGACACGTTTTGGAAGACCTCA
CATAGTGACCGTTCCCGGCTTTCATAGAATGCGGTAACGGTAGGGATTAG
GCCAATAAACACCTACGGAACAAACACGCAGCTTTAAATAAAAGGTGTTA
GTGGTACATACCAGCGGTTCCCGGATCAAACCCccactccttccaatgtt
ccgttcagttcacagatagccgagccggctggccgtgggacctgtgaaaa
caatcgaacGACTTTTAAAAGTCCTAGACTACTGGGCTGtccacgtaaaa
tatcaaaatatcaacTTAAACTAAAAAAAAGAAGCCTTTTCAGAGCCCAA
AAAcctgggctccaaacattcgaaaaagctgcaaagtggaatagagatta
ctgcgaaaaaaaaaacaaacgcaacgtctagtataggctactgAAAACTG
CGAAAGTGACTTCCTTTAATGCGTTTAAAGTtgtgttctttattttcaaa
aggtGTACGGATATGACGACATCAAGAAATGGAAAAACCAATACGAAATc
gttgaagaagaagaaacgcATGCTAACCAATCACAAATGGATGTGGATAG
TGATTAACCAATCAAATGAAAGTATTTGGTGACCTTTGTCACGAAGCCAC
ACGATCGATTCATCCCTTGAAAGGTCTCTTGTTATTGAACACTAGTTATT
TGGTGAATACACTAGAAGGTGAATTTCGTTTTGATATTCATTCGACgaag
atatttcaaaattgatattGATTCACACCCTATAAACTTCAGAAGGAGAG
AGTCACGAAGTTGTTAAATGAAACATTCGATTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011297XLOC_011297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020094-exon-sc0000349-1491911889:3573..3731TCONS_00020094-exon-sc0000349-1491911889:3573..3731Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:3573..3731TCONS_00020094-exon-sc0000349-1510915933:3573..3731Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:3573..3731TCONS_00020094-exon-sc0000349-1575043694:3573..3731Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:9953..10038TCONS_00020094-exon-sc0000349-1491911889:9953..10038Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:9953..10038TCONS_00020094-exon-sc0000349-1510915933:9953..10038Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:9953..10038TCONS_00020094-exon-sc0000349-1575043694:9953..10038Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:12665..12716TCONS_00020094-exon-sc0000349-1491911889:12665..12716Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:12665..12716TCONS_00020094-exon-sc0000349-1510915933:12665..12716Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:12665..12716TCONS_00020094-exon-sc0000349-1575043694:12665..12716Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:12882..12945TCONS_00020094-exon-sc0000349-1491911889:12882..12945Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:12882..12945TCONS_00020094-exon-sc0000349-1510915933:12882..12945Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:12882..12945TCONS_00020094-exon-sc0000349-1575043694:12882..12945Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:13304..13383TCONS_00020094-exon-sc0000349-1491911889:13304..13383Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:13304..13383TCONS_00020094-exon-sc0000349-1510915933:13304..13383Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:13304..13383TCONS_00020094-exon-sc0000349-1575043694:13304..13383Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:14010..14222TCONS_00020094-exon-sc0000349-1491911889:14010..14222Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:14010..14222TCONS_00020094-exon-sc0000349-1510915933:14010..14222Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:14010..14222TCONS_00020094-exon-sc0000349-1575043694:14010..14222Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:15617..15696TCONS_00020094-exon-sc0000349-1491911889:15617..15696Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:15617..15696TCONS_00020094-exon-sc0000349-1510915933:15617..15696Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:15617..15696TCONS_00020094-exon-sc0000349-1575043694:15617..15696Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:16173..16218TCONS_00020094-exon-sc0000349-1491911889:16173..16218Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:16173..16218TCONS_00020094-exon-sc0000349-1510915933:16173..16218Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:16173..16218TCONS_00020094-exon-sc0000349-1575043694:16173..16218Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:16597..16656TCONS_00020094-exon-sc0000349-1491911889:16597..16656Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:16597..16656TCONS_00020094-exon-sc0000349-1510915933:16597..16656Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:16597..16656TCONS_00020094-exon-sc0000349-1575043694:16597..16656Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:19311..19425TCONS_00020094-exon-sc0000349-1491911889:19311..19425Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:19311..19425TCONS_00020094-exon-sc0000349-1510915933:19311..19425Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:19311..19425TCONS_00020094-exon-sc0000349-1575043694:19311..19425Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1491911889:20325..20657TCONS_00020094-exon-sc0000349-1491911889:20325..20657Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1510915933:20325..20657TCONS_00020094-exon-sc0000349-1510915933:20325..20657Clytia hemisphaericaexon
TCONS_00020094-exon-sc0000349-1575043694:20325..20657TCONS_00020094-exon-sc0000349-1575043694:20325..20657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:3573..20657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17702	0.396064	1.3993	1.37442	0	0	0	0.468419	0.697368	0.434274	0	0.526377	0.284279	0.287986	0	0	0	0.32285	0	0	0.388088	0	0	0	0	0.377547	0	0	0	0
Blast
[Close]
BLAST of TCONS_00020094 vs. Swiss-Prot (Human)
Match: TROP (Trophinin OS=Homo sapiens GN=TRO PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.127e-24
Identity = 44/128 (34.38%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  629 QSDSTVVSWGEESQEMALLLIILSLIFMNDGPLTEASLWFTLKKIGVYKERKHRVFGDVNKLVNNDFIKVFYLTRHKEISADGPSFTYSIGPRAAKEISKRKILTFVSQVYGYDDIKKWKNQY-EIVE 1009
            +S + ++   +++ ++ LL++ILS+IFMN    +EA +W  L+K+G+    +H +FG+V KL+ ++F+K  YL   +  ++  P + +  G R+  E SK K+L F  +V   D  K W  QY E VE
Sbjct:  518 ESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDP-KDWAVQYREAVE 644

HSP 2 Score: 48.1358 bits (113), Expect = 2.127e-24
Identity = 22/76 (28.95%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  286 FKRKVSEMVRYLLFADRKKNGIKRADIIKNVLKENPKWFAKVFEEASLKINQVFGLDVVSLETEKKDKSKGYTLIS 513
             + + +++V+YLL  D+ K  IKR+D++++V++E  ++F ++ E AS  + ++F +++  ++ +    S  Y LIS
Sbjct:  444 LQERANKLVKYLLVKDQTKIPIKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQ----SSLYILIS 515
The following BLAST results are available for this feature:
BLAST of TCONS_00020094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TROP2.127e-2434.38Trophinin OS=Homo sapiens GN=TRO PE=1 SV=3[more]
back to top