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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020088 ID=TCONS_00020088|Name=TCONS_00020088|organism=Clytia hemisphaerica|type=transcript|length=3214bp
GTTACAAATTGATTACAAAGTAATCTCATAAATATTTATGCATTATTAAA
ATCATCAATATTAGGTTCACTGGGATGTAACAATTGATTTTATTTNATTA
AAATCATCAACATTAGGTTCCCTAGGATGTAAcgattgattttattttca
aacgaTTCAAGCGAAGTACTGTAAGAATTCCTAGAGAGGAATGACGATCC
AATCgacatattgaaaaaaaagtttgcggTCAACcagaaaaatacatttt
cttaacaataatttcattaaatattgaaatatgttgaatcgattttaaat
aTAACTTTTGGTTCCTATTCAAGTATTTGTTATTACGCAAGGCGGTAACT
TTTTTTATCGaaacaaatatatttttagatattttcatGAGCCATTTGAT
CTCGTGAAATATCTTAAGGTCTTCAATATAATTAGGGCGGGAGATCCAAG
GGAAGGCGGATACATGAATAAATTATGTCACTAAGCTGGGAATCCGCTGA
ATCTCTCAAGTTCAAAGAATGGTAAAGCGCAAATTCCTCTaattaggcga
aaataaaaaactgtAGTAtatccggaaaccggccggttgaaaaaacaaat
tttgaccTGGCCGCAGattatgggttcatctatatggttcatcataaaga
taATCAAGTTAACCGTTCAAGCTGCCAAACGttgtttggttagatattcc
cgcttgtaaatcaagttttgttcgttagtagttactacattagtattcag
ggcttacttcgtactgtttgtacataaaagttataatTAAAGTTcaattt
caatgatcttaagttattgaaaatagcaaaaaaaaatttccggccgCGGC
CACATGAGAGCTCTTTTCCTTCACcagcattccggaaacactacattttt
taattttcgcatTACTTTAATTTTGTGAGTCAGTTTTGtgattaattttt
gcgaaaacGTCAATACGTAATTCATAAATCTACAATATGAAAAGAAAATG
TGTGTTTACACGCTATCTAGAATTAGAAAGTCGATAATATTTAGGGGCAC
TGGGCACTGGTAAAGGTTCCTTATCCCCAGGCCTGTTTATCAGAGGATAA
CGTTCTTGGCTTGGTCTTGAGTCTACTTCGTACACTTTCCGACAGCACAT
ACACGCGCACATTATAGTCAGCACGATGACGATGACGATGAAGATTGCGA
ATAGCCATTCACCGTGTATGAGGCATTGTTTATACATTGGTAGCATCGAG
AAACATTCGAACTCAAACTCCACACTACCATGTCCTTTTaaataagtttg
aaaattgatcGAGTCGAAAGTGAAGAAGTTGCCGGTCCAACAATATCCAT
CGCCTGCATCTAGTTCTGACCGGACACCGTTAATCCAAACGAATACGCGA
CCGTGCGGACACCACGCGCCCGCGTGATCTATACACGTTTGACATGTAGT
GAAACAACTTGCGTATGGCATGTATGGAGCTtcacaaaaatctttcaatG
CTCCTGAAACCGTTGTGTTAATGGCCACTGGATTCCCGCAAGGTTCACCC
GTATCCGGGTCCGTTAAATTACTCGGAGCAAAGCCTACCCGGTGTTTTTC
ACGATCAAAGATGACAACATTTCCCTCAAGAGTCACCTCCCCGAGAACTG
TTCCGTATTGTTTTGCACCGATACTTAAACAATGGAACTGGTCTTGTTTA
CGGACGTAATGTTTTCCGAGGATGGTGAGGGCGAATGATCCACCCTTCAT
ATTCTTCAAATAAATCGTAATATAAGGCCATTTATAAGGGTCTGTATGAA
CACAATAATTATTCCAGAACCTCTCATCGACACGAGGCCCGTGCTTCCGT
AGCATGGCGATCACCGCGATATAGATTTCTGGTTCCAGTAAAATATCGGT
TGTCCCGCTGTCGATAATAGCGGGTGGGTAACTATACGGTGACAGCCCTA
GGCTGTGCCCGGCGACATCGATCCCGGTCATTCGAGCAGTATACCAAGCA
CGGTGTATGATTCGGGTCCATTGTATGGGTGAGATGTATTCATTCTCAAG
CGGATAGTCCAACCAGAAGCGACCGTTACCATTACAAAAAGACAACGTAA
AAACGTCTTCCGCTTTTTTCTCGTCCACTAATTGGTCGAAAATGGGTTCC
ACGTGACTTGTTGATAACGTTTTATAAGCCAATCCCAAGATACCTTCATT
CACcgaattcttcaaaaaaaactcCTTTTCTTGCTTAATGACGGCAAAAT
CCGCCACAATTTGCGGCCCTTCGTTCGGGAAAGCTACAACGTCTCGATAA
ACTTCACCCGACCAAGACCCTTTTCCATATTCCACTTCAACCGGGTGGCC
AATGTAAACAGAAGTAGTGGATTTTTTAGGATCGTAAAAAGTATCaattt
gacatttgacgccATCTTTGTCTTGACATTCAGGCCCAGCGATCGCCATG
TTAGCAGAACCCGTATCGATCAAAAATTCTAAGTTTTGTTTCGGTGTTCC
AAGGTCTAACTGCATGACGTAAGCGTACGATGTGCTACGTAAGGAATACG
ATTTCTCCGTTTCTTTACGTATATTTTCACGTATTGTACTGTTGTCTATT
TTGTTCCATTGGTTATTTGTAATTGTATGATGTTCTTTTGTTTTGCGTTT
CAAATGAAATGATTTCCCAGGATGCAATGTCTTCAATTTTCTCAACACAG
CTCGACTTGCAGAAAGTGTGTGATGAGATGATGAAACTTGCAAACAGCTA
CAAAcctcaaacaaaacaaaaatcatgaaaatctgtagCAAATCCATTGT
GGTATCTGAAATGACCAAGAAATCTCCAATATCTATGTCACATGCAATTT
TTAGCCATCGGATCCATATCGATGTAAAGGCGTGACCGGTGACCGAATAT
ACAAGCCTTTGCTGTGGCCAAATCGGTATTAAAACATACAGTTTGTGAAA
GTTATAATTATTTCATGCTGAATGTGCGTTTTGATGCAGAGAAGCAACAC
TTTGTCTGCACCATCTGTTCATTCAAATTCTTCAAATCAACGATTCAAGA
TGAACTTCTTCCAGCGCCTTTCTAACAACACTGATTCTTCCTATACATct
tctttttcgattttttcttcttctttctgacTTTTTATTCAGTAATCACA
AGTTTGATATGATAAATTCGTTTAACGATAGCATGTTAAAAATCAAACAC
AAAAAGATTTGCCT Run BLAST on NCBI protein sequence of TCONS_00020088-protein >TCONS_00020088-protein ID=TCONS_00020088-protein|Name=TCONS_00020088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=594bp
MDLLQIFMIFVLFEVCSCLQVSSSHHTLSASRAVLRKLKTLHPGKSFHLK
RKTKEHHTITNNQWNKIDNSTIRENIRKETEKSYSLRSTSYAYVMQLDLG
TPKQNLEFLIDTGSANMAIAGPECQDKDGVKCQIDTFYDPKKSTTSVYIG
HPVEVEYGKGSWSGEVYRDVVAFPNEGPQIVADFAVIKQEKEFFLKNSVN
EGILGLAYKTLSTSHVEPIFDQLVDEKKAEDVFTLSFCNGNGRFWLDYPL
ENEYISPIQWTRIIHRAWYTARMTGIDVAGHSLGLSPYSYPPAIIDSGTT
DILLEPEIYIAVIAMLRKHGPRVDERFWNNYCVHTDPYKWPYITIYLKNM
KGGSFALTILGKHYVRKQDQFHCLSIGAKQYGTVLGEVTLEGNVVIFDRE
KHRVGFAPSNLTDPDTGEPCGNPVAINTTVSGALKDFCEAPYMPYASCFT
TCQTCIDHAGAWCPHGRVFVWINGVRSELDAGDGYCWTGNFFTFDSINFQ
TYLKGHGSVEFEFECFSMLPMYKQCLIHGEWLFAIFIVIVIVLTIMCACM
CCRKVYEVDSRPSQERYPLINRPGDKEPLPVPSAPKYYRLSNSR Run BLAST on NCBI transcript from alignment at sc0000348:177822..181035 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020088 ID=TCONS_00020088|Name=TCONS_00020088|organism=Clytia hemisphaerica|type=transcript|length=3214bp|location=Sequence derived from alignment at sc0000348:177822..181035 (Clytia hemisphaerica)
AGGCAAATCTTTTTGTGTTTGATTTTTAACATGCTATCGTTAAACGAATT
TATCATATCAAACTTGTGATTACTGAATAAAAAgtcagaaagaagaagaa
aaaatcgaaaaagaagATGTATAGGAAGAATCAGTGTTGTTAGAAAGGCG
CTGGAAGAAGTTCATCTTGAATCGTTGATTTGAAGAATTTGAATGAACAG
ATGGTGCAGACAAAGTGTTGCTTCTCTGCATCAAAACGCACATTCAGCAT
GAAATAATTATAACTTTCACAAACTGTATGTTTTAATACCGATTTGGCCA
CAGCAAAGGCTTGTATATTCGGTCACCGGTCACGCCTTTACATCGATATG
GATCCGATGGCTAAAAATTGCATGTGACATAGATATTGGAGATTTCTTGG
TCATTTCAGATACCACAATGGATTTGctacagattttcatgatttttgtt
ttgtttgaggTTTGTAGCTGTTTGCAAGTTTCATCATCTCATCACACACT
TTCTGCAAGTCGAGCTGTGTTGAGAAAATTGAAGACATTGCATCCTGGGA
AATCATTTCATTTGAAACGCAAAACAAAAGAACATCATACAATTACAAAT
AACCAATGGAACAAAATAGACAACAGTACAATACGTGAAAATATACGTAA
AGAAACGGAGAAATCGTATTCCTTACGTAGCACATCGTACGCTTACGTCA
TGCAGTTAGACCTTGGAACACCGAAACAAAACTTAGAATTTTTGATCGAT
ACGGGTTCTGCTAACATGGCGATCGCTGGGCCTGAATGTCAAGACAAAGA
TggcgtcaaatgtcaaattGATACTTTTTACGATCCTAAAAAATCCACTA
CTTCTGTTTACATTGGCCACCCGGTTGAAGTGGAATATGGAAAAGGGTCT
TGGTCGGGTGAAGTTTATCGAGACGTTGTAGCTTTCCCGAACGAAGGGCC
GCAAATTGTGGCGGATTTTGCCGTCATTAAGCAAGAAAAGgagttttttt
tgaagaattcgGTGAATGAAGGTATCTTGGGATTGGCTTATAAAACGTTA
TCAACAAGTCACGTGGAACCCATTTTCGACCAATTAGTGGACGAGAAAAA
AGCGGAAGACGTTTTTACGTTGTCTTTTTGTAATGGTAACGGTCGCTTCT
GGTTGGACTATCCGCTTGAGAATGAATACATCTCACCCATACAATGGACC
CGAATCATACACCGTGCTTGGTATACTGCTCGAATGACCGGGATCGATGT
CGCCGGGCACAGCCTAGGGCTGTCACCGTATAGTTACCCACCCGCTATTA
TCGACAGCGGGACAACCGATATTTTACTGGAACCAGAAATCTATATCGCG
GTGATCGCCATGCTACGGAAGCACGGGCCTCGTGTCGATGAGAGGTTCTG
GAATAATTATTGTGTTCATACAGACCCTTATAAATGGCCTTATATTACGA
TTTATTTGAAGAATATGAAGGGTGGATCATTCGCCCTCACCATCCTCGGA
AAACATTACGTCCGTAAACAAGACCAGTTCCATTGTTTAAGTATCGGTGC
AAAACAATACGGAACAGTTCTCGGGGAGGTGACTCTTGAGGGAAATGTTG
TCATCTTTGATCGTGAAAAACACCGGGTAGGCTTTGCTCCGAGTAATTTA
ACGGACCCGGATACGGGTGAACCTTGCGGGAATCCAGTGGCCATTAACAC
AACGGTTTCAGGAGCattgaaagatttttgtgaAGCTCCATACATGCCAT
ACGCAAGTTGTTTCACTACATGTCAAACGTGTATAGATCACGCGGGCGCG
TGGTGTCCGCACGGTCGCGTATTCGTTTGGATTAACGGTGTCCGGTCAGA
ACTAGATGCAGGCGATGGATATTGTTGGACCGGCAACTTCTTCACTTTCG
ACTCgatcaattttcaaacttatttAAAAGGACATGGTAGTGTGGAGTTT
GAGTTCGAATGTTTCTCGATGCTACCAATGTATAAACAATGCCTCATACA
CGGTGAATGGCTATTCGCAATCTTCATCGTCATCGTCATCGTGCTGACTA
TAATGTGCGCGTGTATGTGCTGTCGGAAAGTGTACGAAGTAGACTCAAGA
CCAAGCCAAGAACGTTATCCTCTGATAAACAGGCCTGGGGATAAGGAACC
TTTACCAGTGCCCAGTGCCCCTAAATATTATCGACTTTCTAATTCTAGAT
AGCGTGTAAACACACATTTTCTTTTCATATTGTAGATTTATGAATTACGT
ATTGACgttttcgcaaaaattaatcaCAAAACTGACTCACAAAATTAAAG
TAatgcgaaaattaaaaaatgtagtgtttccggaatgctgGTGAAGGAAA
AGAGCTCTCATGTGGCCGcggccggaaatttttttttgctattttcaata
acttaagatcattgaaattgAACTTTAattataacttttatgtacaaaca
gtacgaagtaagccctgaatactaatgtagtaactactaacgaacaaaac
ttgatttacaagcgggaatatctaaccaaacaaCGTTTGGCAGCTTGAAC
GGTTAACTTGATtatctttatgatgaaccatatagatgaacccataatCT
GCGGCCAggtcaaaatttgttttttcaaccggccggtttccggataTACT
acagttttttattttcgcctaattAGAGGAATTTGCGCTTTACCATTCTT
TGAACTTGAGAGATTCAGCGGATTCCCAGCTTAGTGACATAATTTATTCA
TGTATCCGCCTTCCCTTGGATCTCCCGCCCTAATTATATTGAAGACCTTA
AGATATTTCACGAGATCAAATGGCTCatgaaaatatctaaaaatatattt
gtttCGATAAAAAAAGTTACCGCCTTGCGTAATAACAAATACTTGAATAG
GAACCAAAAGTTAtatttaaaatcgattcaacatatttcaatatttaatg
aaattattgttaagaaaatgtatttttctgGTTGAccgcaaacttttttt
tcaatatgtcGATTGGATCGTCATTCCTCTCTAGGAATTCTTACAGTACT
TCGCTTGAAtcgtttgaaaataaaatcaatcgTTACATCCTAGGGAACCT
AATGTTGATGATTTTAATNAAATAAAATCAATTGTTACATCCCAGTGAAC
CTAATATTGATGATTTTAATAATGCATAAATATTTATGAGATTACTTTGT
AATCAATTTGTAAC Coding sequence (CDS) from alignment at sc0000348:177822..181035 >TCONS_00020088 ID=TCONS_00020088|Name=TCONS_00020088|organism=Clytia hemisphaerica|type=CDS|length=1785bp|location=Sequence derived from alignment at sc0000348:177822..181035 (Clytia hemisphaerica)
ATGGATTTGctacagattttcatgatttttgttttgtttgaggTTTGTAG
CTGTTTGCAAGTTTCATCATCTCATCACACACTTTCTGCAAGTCGAGCTG
TGTTGAGAAAATTGAAGACATTGCATCCTGGGAAATCATTTCATTTGAAA
CGCAAAACAAAAGAACATCATACAATTACAAATAACCAATGGAACAAAAT
AGACAACAGTACAATACGTGAAAATATACGTAAAGAAACGGAGAAATCGT
ATTCCTTACGTAGCACATCGTACGCTTACGTCATGCAGTTAGACCTTGGA
ACACCGAAACAAAACTTAGAATTTTTGATCGATACGGGTTCTGCTAACAT
GGCGATCGCTGGGCCTGAATGTCAAGACAAAGATggcgtcaaatgtcaaa
ttGATACTTTTTACGATCCTAAAAAATCCACTACTTCTGTTTACATTGGC
CACCCGGTTGAAGTGGAATATGGAAAAGGGTCTTGGTCGGGTGAAGTTTA
TCGAGACGTTGTAGCTTTCCCGAACGAAGGGCCGCAAATTGTGGCGGATT
TTGCCGTCATTAAGCAAGAAAAGgagttttttttgaagaattcgGTGAAT
GAAGGTATCTTGGGATTGGCTTATAAAACGTTATCAACAAGTCACGTGGA
ACCCATTTTCGACCAATTAGTGGACGAGAAAAAAGCGGAAGACGTTTTTA
CGTTGTCTTTTTGTAATGGTAACGGTCGCTTCTGGTTGGACTATCCGCTT
GAGAATGAATACATCTCACCCATACAATGGACCCGAATCATACACCGTGC
TTGGTATACTGCTCGAATGACCGGGATCGATGTCGCCGGGCACAGCCTAG
GGCTGTCACCGTATAGTTACCCACCCGCTATTATCGACAGCGGGACAACC
GATATTTTACTGGAACCAGAAATCTATATCGCGGTGATCGCCATGCTACG
GAAGCACGGGCCTCGTGTCGATGAGAGGTTCTGGAATAATTATTGTGTTC
ATACAGACCCTTATAAATGGCCTTATATTACGATTTATTTGAAGAATATG
AAGGGTGGATCATTCGCCCTCACCATCCTCGGAAAACATTACGTCCGTAA
ACAAGACCAGTTCCATTGTTTAAGTATCGGTGCAAAACAATACGGAACAG
TTCTCGGGGAGGTGACTCTTGAGGGAAATGTTGTCATCTTTGATCGTGAA
AAACACCGGGTAGGCTTTGCTCCGAGTAATTTAACGGACCCGGATACGGG
TGAACCTTGCGGGAATCCAGTGGCCATTAACACAACGGTTTCAGGAGCat
tgaaagatttttgtgaAGCTCCATACATGCCATACGCAAGTTGTTTCACT
ACATGTCAAACGTGTATAGATCACGCGGGCGCGTGGTGTCCGCACGGTCG
CGTATTCGTTTGGATTAACGGTGTCCGGTCAGAACTAGATGCAGGCGATG
GATATTGTTGGACCGGCAACTTCTTCACTTTCGACTCgatcaattttcaa
acttatttAAAAGGACATGGTAGTGTGGAGTTTGAGTTCGAATGTTTCTC
GATGCTACCAATGTATAAACAATGCCTCATACACGGTGAATGGCTATTCG
CAATCTTCATCGTCATCGTCATCGTGCTGACTATAATGTGCGCGTGTATG
TGCTGTCGGAAAGTGTACGAAGTAGACTCAAGACCAAGCCAAGAACGTTA
TCCTCTGATAAACAGGCCTGGGGATAAGGAACCTTTACCAGTGCCCAGTG
CCCCTAAATATTATCGACTTTCTAATTCTAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020088-exon-sc0000348-1491911889:177822..181035 | TCONS_00020088-exon-sc0000348-1491911889:177822..181035 | Clytia hemisphaerica | exon |
| TCONS_00020088-exon-sc0000348-1510915933:177822..181035 | TCONS_00020088-exon-sc0000348-1510915933:177822..181035 | Clytia hemisphaerica | exon |
| TCONS_00020088-exon-sc0000348-1575043694:177822..181035 | TCONS_00020088-exon-sc0000348-1575043694:177822..181035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:177822..181035 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
BLAST of TCONS_00020088 vs. Swiss-Prot (Human)
Match: BACE2 (Beta-secretase 2 OS=Homo sapiens GN=BACE2 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.501e-37 Identity = 111/348 (31.90%), Postives = 167/348 (47.99%), Query Frame = -1
Query: 1571 AYVMQLDLGTPKQNLEFLIDTGSANMAIAGPECQDKDGVKCQIDTFYDPKKSTTSVYIGHPVEVEYGKGSWSGEVYRDVVAFPNE-GPQIVADFAVIKQEKEFFLKNSVNEGILGLAYKTLS--TSHVEPIFDQLVDEKKAEDVFTLSFCNG----------NGRFWLDYPLENEYISPIQWTRIIHRAWYTARMTGIDVAGHSLGLS--PYSYPPAIIDSGTTDILLEPEIYIAVIAMLRKHG--PRVDERFWNN---YCVHTDPYKW---PYITIYLKNMKGG-SFALTILGKHYVRKQD----QFHC--LSIGAKQYGTVLGEVTLEGNVVIFDREKHRVGFAPS 2524
Y +++ +GTP Q L+ L+DTGS+N A+AG IDT++D ++S+T G V V+Y +GSW+G V D+V P + + A I + + FFL GILGLAY TL+ +S +E FD LV + +VF++ C G L + Y I +T I +Y + +++ G SL L Y+ AI+DSGTT + L +++ AV+ + + P + FW C W P I+IYL++ SF +TIL + Y++ + C I V+G +EG VIFDR + RVGFA S
Sbjct: 91 GYYLEMLIGTPPQKLQILVDTGSSNFAVAGTP-------HSYIDTYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAAS 431
The following BLAST results are available for this feature:
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