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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020049 ID=TCONS_00020049|Name=TCONS_00020049|organism=Clytia hemisphaerica|type=transcript|length=977bp
CGATTTAATTTATAAGCTCATGAATATAATTGAATATAGGTGATCTATAG
CAGAATATAGGTAATCTAGCTAGTTCAACACAGAGATAATGAAATTTACC
TCGAAGTGGACTGAGGTGACTGGGAACCAACAAAACCAAGTCTTAACACG
GACACCTCAAGATTTAAACTACGGTGGCAATGCAATACGGTCATCTGTGT
GCGGTGGCAAGATCTGCTAGAGGGTTTTTTCTCGAGATAAAACCTATTTT
TAGAAAGGCTTACGCAATGAATTTTTCTCTTGGCCAATCAATTTTGCTGG
CGCGAGAGGCAAACAAACCAAAATGCTACCATAACAGTGAAAGTTTATTT
TGAAGAACAGGAAAAAGCTTTATGGTTTACAGTTTAGATTCTTTTatcca
cacacacacacactcaAATATCAACGAACCTGAACAACAGTTCAAAATAC
TAAAACAAAATGTCAAGAGAATAGTCCTCCAAAGGCAAAAGTTAAAGATG
TCTGGTTTTCGAATCAAGCTGTTCAGAAATGGTAAAAAAGATTCTGGTTT
GGTGATTTCAATTCCTGAGTCTTATGAAAGTCTAGTAAATGTTGCATCCA
ATAAATTTGAGCAAAGaatatcaaaactttatttatCGGATGGATCATTA
GTGACCACCATCAACCTCATCAGGTATCTTACTTCTAAAAGAATTTCACA
TTTTGTGTCTGTCACGCTTAAATGGTAGGTAAACTGCAATTTTGAATGGT
TTGTCAGGGAGTTGATTCAACTATGAAAGAAGGATTTTGTGCAGTCTTTA
AGACAAAAATcttattgtttttttgaaaagcaGTAGAATGATGAAATTCC
CCTTAAAGTCAAAGTTAAAGAACATCAACAAtaccatctttatcatccta
agggcttttgatgtgtaaGCTTTTGATAATAAGATAATAATTTCATCTTC
AGATCTCCCTAATAACTCTGCTTGGCT Run BLAST on NCBI protein sequence of TCONS_00020049-protein >TCONS_00020049-protein ID=TCONS_00020049-protein|Name=TCONS_00020049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MVYSLDSFIHTHTHSNINEPEQQFKILKQNVKRIVLQRQKLKMSGFRIKL
FRNGKKDSGLVISIPESYESLVNVASNKFEQRISKLYLSDGSLVTTINLI
RYLTSKRISHFVSVTLKW Run BLAST on NCBI transcript from alignment at sc0000348:239501..243373+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020049 ID=TCONS_00020049|Name=TCONS_00020049|organism=Clytia hemisphaerica|type=transcript|length=3873bp|location=Sequence derived from alignment at sc0000348:239501..243373+ (Clytia hemisphaerica)
CGATTTAATTTATAAGCTCATGAATATAATTGAATATAGGTGATCTATAG
CAGAATATAGGTAATCTAGCTAGTTCAACACAGAGATAATGAAATTTACC
TCGAAGTGGACTGAGGTGACTGGGAACCAACAAAACCAAGTCTTAACACG
GACACCTCAAGATTTAAACTACGGTGGCAATGCAATACGGTCATCTGTGT
GCGGTGGCAAGATCTGCTAGAGGGTTTTTTCTCGAGATAAAACCTATTTT
TAGAAAGGCTTACGCAATGAATTTTTCTCTTGGCCAATCAATTTTGCTGG
CGCGAGAGGCAAACAAACCAAAATGCTACCATAACAGTGAAAGTTTATTT
TGAAGAACAGGAAAAAGCTTTATGGTTTACAGTTTAGATTCTTTTatcca
cacacacacacactcaAATATCAACGAACCTGAACAACAGTTCAAAATAC
TAAAACAAAATGTCAAGAGAATAGTCCTCCAAAGGCAAAAGTTAAAGATG
TCTGGTTTTCGAATCAAGCTGTTCAGAAATGGTAAAAAAGATTCTGGTTT
GGTGAGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNacaagcaaaaaaaatttccataattatatttgactatcaaaagt
tacagacattcttgtttccactgccaattatatctggacagactttagat
tcTTTTATCCACACACACACACTCAAATATCAACGAACCTGAGCAACAGT
TCAAAATACTAAAACAAAATGTCAAGAGAATAGTCCTCCAAAGGCAAAAG
TTAAAGATGTCTGGTTTTCGAATCAAGCTGTTCAGAAATGGTAAAAAAGA
TTCTGGTTTGgtgagtttttttattttagttgtcttttatatattttgta
tttattcttTATAGCTATCCACCAGCTAGTCTCAGAGCTTACCAATTCTT
CAAGATTTCAAAAGCCTACACAGAGGAACTTTTTCATGATCTGTTTTCAT
CATCCTAggcgaccatcgaaaaattgttccgTAAAAATGCATACAGGCGA
ACAGGACCCTGccaacgcaccggactgtccggtgtatttgtctggtggca
aaaagtatcctttcgctacaccggacgcaagaagcgctacaccggacgca
agaagtccggtgtcagtccggtgttgcatacagggaattttggacgccgg
acatttatgaaacaaaaaattaagaaacaccggatgcactggactggtca
tgtccggtgttttgattgttcggtgggaaaaaatatccttctccaacacc
agacatccgacttccttaagtccggtgtagaaattgtccggtggtaaaaa
aaattctcattttacaccggactttcgcgtgtccggtgttcgttaagtcc
ggtgcgtcagcAGGGTCCTGGGCGAACGGGCGGTTGGAAAAATTCCCAAG
TTTTTTAAAATCACTTCTGTACCGTGAGTCCGAACATCCGACAGCCCTGc
ttaaatccgaccccccaaataactgctatgaaaaaaaattctatgtttac
aaacattccctctccaagttgaacaagaaactatattgcaagaactctcg
aatcaaaacatctaacaagatgactaaaatgtgaagatgtcaattaatgt
gataaaaaagtgtgagttgtaaaaataattacctttattattctgaatct
gttgctcgtgtttaaaacgttaacaattttgtaataaaaaaatatgcttt
GTATAAAGAAGCatttaatgttttggttcaattgattcagtgtatcaaat
ctctcagtttagttgacactttggtatcttcattgtgtcacagcaaaaag
tttgtttttattttagtttgtatctttgaaagaccccattggATTAAGGC
AGgcctgtcggatttaggaccactcatggTAAGTCGGGGGGAGGTGGTGA
CacgaacagaacaattttctgATAGCCGCCAGAGCAATCAAGAAAAAAGC
TAcggtgagtggtcctaaatcctacagccctgcctaattccgatcCCCCA
AATGTAAGGTTGGAAAGTTCAGCAAATCCCAAAaagaaattgcaattttt
gcctgaaaattagatttttttctctaaaaatattgtaaattgCATAGTTA
TCAAGTGTCTTGCATCCTGCAGGGCACGTACGACCTGTTGTCCCGCTGTA
TGCCCCCTAAAATCCCAAGCTGAATTTTGCGCTCGCTTTGTTTGCATCTG
ATCACGCATTCGGAATTTTGAAACTTGGCAACTATGGATTTGTATCAGTT
GCTTGGATTGCAATGTAGATTCTGTGGTTGAGAAGAGTCAATCATTTATT
CTGTCATGAAGAATATTGACAGTCCTCTATTGAGAACAAACAATTACACC
ATATTAAAGGAAGATAAAATGTGTTTTTATTTCACTCTCAATTTTAGGTG
ATTTCAATTCCTGAGTCTTATGAAAGTCTAGTAAATGTTGCATCCAATAA
ATTTGAGCAAAGaatatcaaaactttatttatCGGATGGATCATTAGTGA
CCACCATCAACCTCATCAGGTATCTTACTTCTAAAAGAATTTCACATTTT
GTGTCTGTCACGCTTAAATGGTAGGTAAACTGCAATTTTGAATGGTTTGT
CAGGGAGTTGATTCAACTATGAAAGAAGGATTTTGTGCAGTCTTTAAGAC
AAAAATcttattgtttttttgaaaagcaGTAGAATGATGAAATTCCCCTT
AAAGTCAAAGTTAAAGAACATCAACAAtaccatctttatcatcctaaggg
cttttgatgtgtaaGCTTTTGATAATAAGATAATAATTTCATCTTCAGAT
CTCCCTAATAACTCTGCTTGGCT Coding sequence (CDS) from alignment at sc0000348:239501..243373+ >TCONS_00020049 ID=TCONS_00020049|Name=TCONS_00020049|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000348:239501..243373+ (Clytia hemisphaerica)
ATGGTTTACAGTTTAGATTCTTTTatccacacacacacacactcaAATAT
CAACGAACCTGAACAACAGTTCAAAATACTAAAACAAAATGTCAAGAGAA
TAGTCCTCCAAAGGCAAAAGTTAAAGATGTCTGGTTTTCGAATCAAGCTG
TTCAGAAATGGTAAAAAAGATTCTGGTTTGGTGATTTCAATTCCTGAGTC
TTATGAAAGTCTAGTAAATGTTGCATCCAATAAATTTGAGCAAAGaatat
caaaactttatttatCGGATGGATCATTAGTGACCACCATCAACCTCATC
AGGTATCTTACTTCTAAAAGAATTTCACATTTTGTGTCTGTCACGCTTAA
ATGGTAGATGGTTTACAGTTTAGATTCTTTTatccacacacacacacact
caAATATCAACGAACCTGAACAACAGTTCAAAATACTAAAACAAAATGTC
AAGAGAATAGTCCTCCAAAGGCAAAAGTTAAAGATGTCTGGTTTTCGAAT
CAAGCTGTTCAGAAATGGTAAAAAAGATTCTGGTTTGGTGATTTCAATTC
CTGAGTCTTATGAAAGTCTAGTAAATGTTGCATCCAATAAATTTGAGCAA
AGaatatcaaaactttatttatCGGATGGATCATTAGTGACCACCATCAA
CCTCATCAGGTATCTTACTTCTAAAAGAATTTCACATTTTGTGTCTGTCA
CGCTTAAATGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020049-exon-sc0000348-1491911889:239501..240051 | TCONS_00020049-exon-sc0000348-1491911889:239501..240051 | Clytia hemisphaerica | exon |
| TCONS_00020049-exon-sc0000348-1510915933:239501..240051 | TCONS_00020049-exon-sc0000348-1510915933:239501..240051 | Clytia hemisphaerica | exon |
| TCONS_00020049-exon-sc0000348-1575043694:239501..240051 | TCONS_00020049-exon-sc0000348-1575043694:239501..240051 | Clytia hemisphaerica | exon |
| TCONS_00020049-exon-sc0000348-1491911889:242948..243373 | TCONS_00020049-exon-sc0000348-1491911889:242948..243373 | Clytia hemisphaerica | exon |
| TCONS_00020049-exon-sc0000348-1510915933:242948..243373 | TCONS_00020049-exon-sc0000348-1510915933:242948..243373 | Clytia hemisphaerica | exon |
| TCONS_00020049-exon-sc0000348-1575043694:242948..243373 | TCONS_00020049-exon-sc0000348-1575043694:242948..243373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:239501..243373 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021789 | KHA_dom |
Blast
The following BLAST results are available for this feature:
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