TCONS_00020047 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020047
Unique Name	TCONS_00020047
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2371

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000348:232894..239216+

transcript sequence

>TCONS_00020047 ID=TCONS_00020047|Name=TCONS_00020047|organism=Clytia hemisphaerica|type=transcript|length=2371bp
ATACGGTATCTATGGTCACTCCACAGCAAAGACATCAAAGTTTGTACCAC
CTTTGGTTCACCCATCATCTCCTCCAATCAGAATCAAAATGGAGATCATG
GAGTTCTCCAACATAACAGGGAGCGTGATCAACACCAAATGGAATTTCTT
GCTAAAGAGAGGAGTGAAAAAGAACGAGTTGAGCTTGATATGATTATTGC
CAAACCGAAACCTTTCTTTCACCACCGAGGGAAACGAGCAACCTTGGTTG
ATGAACGATACATGTGGCCTAACAACACCGTTCCATATGTCTTTGACACA
GTGAACCCTGTCAACGAAGAGTTGCGAAACTTGACCATCGCTGCAGTGCA
CCACATCGAAAAATATTCCTGCATTCGATTCAAAGAACTCACTGATGAAG
GTTATTACGTTAACATCACCAATTCTGGCCCTGGttgttACTCTTACCTC
GGATTTATAAACTATGGACCAGCAGAATATGGTCAAACCTTAAACCTTGC
TGATGATTGTAATGGCATGGAGGTCACCATCCATGAATTTCTCCACGCTT
TGGGGTACTATCATGAACATAGTCGACCCGATCGATCGGATTATATCACG
CTCAATATGAGTAATATACTTCCAGGAATGGAAACGCAATTCACCAAGGT
TAATTTAACACACGGTGATGAAGCAGGACCGGTGACTTTGCAAAACATTT
CTTACGATATCATGAGCATCATGCACTACGGACAGTATGCGTTCACCAAG
CACCAACAATTGACATACGGACGACAAGACCAAATGACAATGTATTCAAA
TGATGATTATATGGCGCAACTGGGCGGTTATTCTCTCTCCGAGAAAGACA
TCATCCGACTGAACACTAAATACAACTGCAATGTCAACATCACTGAACTT
GTTTTGATGAAGAAGGCGGAAGATGGCGGGAATGGTGGTGCAGAGGgagG
AGCAACTGAAACTACAACTACAGCAATGCCAGAAGCTTCACAGCCACCAA
CTCAAACATCGACCAGCGCCGCGGTCTCCAGTGAAAGTTTGTCGGGCACC
ACTATCACAACAGAAACAATCAGCGAAAACAACATTTCCACCAATGACCA
CTGGACCAGTACGACTGAAGCACCACAATCAACATCCACTTCAAGTAATG
AGGGAATAGAAACTAACACCACGATTGCGACGGAGCCCGAagacacaaca
acaacaaccatgGCACCAACAACCACAACTTTCAATACATCATCACTTAA
CTTCACACTACCGGCTAACACATCAGCAGAAGATTTCTTTGGTACAAACA
CTAGCAACTGGGGAAGTGACGCAAACCACTACAAGTCATCCATGCTACAC
ACGCTTTTCTCTATGTCCTTCATCGCCATTTGCACTTTTGCTTTATTTTA
ACATCTTTAAACACGAATATAAAATTCAGGTGAAAATTCGAGAAGCCTGA
ATCTACCAACGACCATTTGGTTCGAAACTCGTCAGTTTcttacccagagc
cacttgaTTTTTctgatggacgtgatacaatCCTTTTGGTAACGCCATCa
gaattatcaaaaagtgagcTAAGGGACTGGATACAAAACTGTATGTTAAA
TTTTAATTGAGACAAGGATATATCGGTCAATGATCGAATCATCGGAATAC
ATTTAAAAAATGGTTGTCCCAATGAAAACGAAAGACACTGGAACCACACG
CCATTTTTGAATGTCTTGGcaaaaaaatgtgtaacaaTAACAAACATTCT
TGTGGATGTCGTAAAAAAGATGCCTGAAAGATTTTGGATTATCTCTGAAA
AtggaatttttgcaattttccttTGAAACTCTTTTCTCTCTACAGGGTGT
GGTCGGACAAAAATTATCCTACTTGCAGAGCAACCAGTgtcatagaaatt
ttatttctctttttgtttattgCGCTGGAACTCTCGTCATAAGTGCTCCC
ACTAGTGGGCCCATTAGACACTTTTCTCATGTCAGATACATAATGCATTC
AACAAAAATTCGTCTGTCGTTAGTTTTTCATTGTAAAATAgataaaattt
aacttttttcctCCAGCTAAGCACCCCAGTGGACTTCACACAATCatgca
aatttttttcccaaattcatgTATTAACGCaatgttttttttgcaataca
ctcttctcgagatgcataaatttattgttgtcctcgttttcaaacagatt
tcattgctatgaaattatacatttaaaccaatttaaattcccaaaaggca
gccattaactctaaaacaaaagtgcttgaaattcaaaatgtctcatgagg
tgtaaacaacacacttatcattgtgaatatgtaattttatagcaatgaaa
tctgtttgaaaacgaggacaa

Run BLAST on NCBI

transcript from alignment at sc0000348:232894..239216+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020047 ID=TCONS_00020047|Name=TCONS_00020047|organism=Clytia hemisphaerica|type=transcript|length=6323bp|location=Sequence derived from alignment at sc0000348:232894..239216+ (Clytia hemisphaerica)
ATACGGTATCTATGGTCACTCCACAGCAAAGACATCAAAGGtttgaatta
tttatttttcatgtgACAAAATCTCGGTATGTGTTTTAAGTTACAGTCCA
TTATTGATTTGTTACTAAGTTTAGAAATGTCCCGGTCCGTTACCCAATCA
TGAAGTAAATTATTTAATAAGTAATTGAACTGATttagtttttgaatatt
tcgggaaactatttaaaaaatggaaaacagTTACATATAGTTCAgttata
aaataatatttcttggGATTTATTCATGATGAGACGAAAATTGATTCTAA
TCGCACTTTTTGTGTTAGGTAATGTTTGACCCTCTTTCTCACATTAAGAT
GGTTGAAAAATACTTGTAAAAGGCAATTTTCATATAGGCTTTTCACTCTA
ATTCGTACCtcttttatttgaatatttctgtaattcaacaaaaatattcG
TCCACTAAGCTGTATAAAGTCTAGGAAATAGTCTCcgttttcgaatcttt
ctttaattcgatgTCAATTCTTGGcaccttgaaaatcgaattaaggAGGG
TCAATTTTAGTCCCAACATATATTGACATATATTGGTAGTATTACTGACT
GAGTGTTTTAcctctttgtttgtttgttctaGTTTGTACCACCTTTGGTT
CACCCATCATCTCCTCCAATCAGAATCAAAATGGAGATCATGGAGTTCTC
CAACATAACAGGGAGCGTGATCAACACCAAATGGGTGAGatgaaaatcat
tttaaaagtcCTTTATTTTTTACGAGTCTGTTAAGTGTCTTTCATGCAGG
ATAACAATAAAATCgaacttttgaattttgttttatgGGTTCATTGTTAG
ATAACAATGCAattgaacttttgaattttgCTTGTTTTGTGTTCATTGTT
tctggtggtggtggtggtggtggtgactttctgtcaaaaatttacttttg
agcttaatatttgttaaaaataaccatgaaagaaacattttagaagccaa
aaatacaaaatttagtTTGCCTTACGAGTGTCTATACTGTCATAAGGCGT
TCATCTCCCGTGcaatattttcattaaatgttATTTTCCCATAGAATTTC
TTGCTAAAGAGAGGAGTGAAAAAGAACGAGTTGAGCTTGATATGATTATT
GCCAAACCGAAACCTTTCTTTCACCACCGAGGGAAACGAGCAACCTTGGT
TGATGAACGATACATGTGGCCTAACAACACCGTTCCATATGTCTTTGACA
CAGTGAACCCTGTCAGTAAGTGATTTACAACAAATCTCCCTTCAACCAAA
TTAGTATTATCTTAGCGTCAGTTGTGGATCATTGAATCGCaaaattaaaa
ctttacaaatagttgAGTGTACAAACTTTAAGCCACCAAGGAGCAAGGCA
TAAAGATACCTGGAAGTCGTTCCCAATCGGGAAGAAGCTGTCATTCTATT
GGTCCTAATACTATTGACTTGTATTTGCATTTGCATTTGAATTTTATCGT
TCTACTCTACATGATACAAACAGGGCGTATGTATGTGAGTGTTTTTGAAT
AAATCGTAATTCCGTCTTCTTTAGACGAAGAGTTGCGAAACTTGACCATC
GCTGCAGTGCACCACATCGAAAAATATTCCTGCATTCGATTCAAAGAACT
CACTGATGAAGGTTATTACGTTAACATCACCAATTCTGGCCCTGGGTAAG
TTTATTGTTCATTCTAAACACTTAGTAAATTTGCTTAAAAGCTTTATTGG
GAGATACTAaactacacgtctttttttttttaagaagcacacttttaaga
aacatgaggctcagaatgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNaaagtttagaaacatgtaagaaacatttaag
gctcaaaaggccgatttcttaagaaacattgaggctgcttggtaaaacta
gtttcttaaaaaaaaaaacgtgtagacttGAATAGGCTACCTGGGCAGGT
AATCTCACAACCGATGAGAGTTAAATCTCCTGTATAAGAGAAACAAATAC
AGTTGACgatctctaattcgacgttctactattcgataggctcccttatt
cgatgaaatttaaagtccccgtcaacaagaaactctcataaacgacgcgc
ccttattcgataagctctctttttcgatgaaaatccaattccccttgaag
atcgaattagagagcgtcaactgtaatacAACgggaaaaagaaacttttt
gaggCCCCTTTTTCTGTTTGAATGAGAATAGCCAACCTGCTTTTTTGGAG
AGTAATAtctaagtgttttttttttttgaaatcagaTGCTCGAGAACTTA
TCATTTGACCCATggatttttcgtaattttttcatcgggttctttgaaat
tttgccaacCCATTTCTCACTAAACATCGAATTCATTCATAATATTAGgt
aaaaaattttgcttgaGCCCTATTTCCAAAACATCCTTATTGTGTTAAAC
CCATCTCGGAAAATTCCTTTCCTGCAGAAATGACGGTGACCATTTATTTC
aactttctaaattttcagttgttACTCTTACCTCGGATTTATAAACTATG
GACCAGCAGAATATGGTCAAACCTTAAACCTTGCTGATGATTGTAATGGC
ATGGAGGTCACCATCCATGAATTTCTCCACGCTTTGGGGTACTATCATGA
ACATAGTCGACCCGATCGATCGGATTATATCACGCTCAATATGAGTAATA
TACTTCCAGGTAAGAATACCTAAGAAATCTTTTCATTTCCCTTCCAAATA
AGTACGAATACGAGATTACAAGCTTCCGACGATGGGAATGAAATTTCTCA
CATTTCAcgattaaaacattttcaataaaagcTACAGGACATCGAATAAT
ATTAAGCAGAATGTGAAATGTGAGGAGATGCAAAGAATCTCTATCCAACT
GTCTCCCGCCATCAGAAGATTGGGTGGAAGAGCAGCATATTCATTTCATC
CTTATTTCGGGATTTTCCAGCACTGCTTACTGAATTTAGACCATTCCACA
GGTAACCGTTCCGTTTCGCTCTGATATGAAataaagccattctattggtt
ggAAGTCAAATTTGCTTCGTTTCAAACCATAGCTCTTAGTATATTCTTAC
ACAAGACATAATGACAAATGTTTTACCATTTCAGGAATGGAAACGCAATT
CACCAAGGTTAATTTAACACACGGTGATGAAGCAGGACCGGTGACTTTGC
AAAACATTTCTTACGATATCATGAGCATCATGCACTACGGACAGTAAGTG
CAAACAATTgataaattcgtaatttgatgGTTTGATGTACGTCCATCGTT
TCGTAGTAcactgtgcgcattgtctgtttgatagaAAGATTCTCTCCTCT
CCCCCCCTCTCTCACCCGCACTCCATCGCAAATATCCCTTGGATGTTAAC
AAATAGGAAACTCCAAAATCATATTTGCCATAGCTTCGAAATTAGGAATG
GGCTTGCTGATATAAGTTGGGAAGTTGGGTGAAGCTTAAAATTTGTAAGA
TTAAAGATTCGACACATTAACACGTTATCCTGTTGTTTTTTTAAGTCCTt
cgctttaaaggttttgtttttgaataagagtgatatcgtttgcttactca
tcaacttTAATCCACAAGCTTTTTgccattggattgacacggatgcgaag
caagattagtcagaaagaggaaaagaaaaacagctttttgcttatatcag
cataatataacaataggcagacactatcctgatatgaaatatgtgtctga
tatgaaacgggaacacttatgtaaaaataaaacgttCAAGTACGCACTCT
GTTTGCCATTATATGGAAACCACTTTCAAGGGAATCGCCATATTTACACT
ATGTCTTTTCATATCGTAGCAGAGAATATGCACTAAAGCGAATGTCCTTA
ATTCTTCTGTTGATTAGGTATGCGTTCACCAAGCACCAACAATTGACATA
CGGACGACAAGACCAAATGACAATGTATTCAAATGATGATTATATGGCGC
AACTGGGCGGTTATTCTCTCTCCGAGAAAGACATCATCCGACTGAACACT
AAATACAACTGCAATGTCAACATCACTGAACTTGTTTTGATGAAGAAGGC
GGAAGATGGCGGGAATGGTGGTGCAGAGGGTAAGACATTCCTAAACAATT
ATGTGCTttgaaatctttgaacaaaaaaGAGTTGCGTTTTCATTCATTTA
CTAGTCATTCACTGTTGTTATTAAAACTCCCCCTTCTCATAGAATCGGTG
TGACCCGCTCCAACGGGAAAAAGTTTTCCCtgctgaaaataattaaataa
aaaaatcctcaTGACAAAATATTGTACTATTatttcaaatccccagccag
gCATAACAAAAGATGGGAATACCAATCCTGATCGCGTTTCAgcccgttat
ttttacccccagtTGCTGAAAATATCATagcaggtctgtgagaaggtaGT
GTGTGAAAAAGGGGCGTGTCAAAGCTTCTTTTAAACGAAATAATATTCAA
AGAAATTCGAACTCTGCTCGCGCGTAGAATCACAAATAAGGCTAAGAAAC
TTTGGTCATCATGTCTATCCATCGCTTGTAGAAAATTGAGTTTCATGCAC
GCCAATAATAAATactttgtttaaaaaatctatgttttttttcgaaagga
gGAGCAACTGAAACTACAACTACAGCAATGCCAGAAGCTTCACAGCCACC
AACTCAAACATCGACCAGCGCCGCGGTCTCCAGTGAAAGTTTGTCGGGCA
CCACTATCACAACAGAAACAATCAGCGAAAACAACATTTCCACCAATGAC
CACTGGACCAGTACGACTGAAGCACCACAATCAACATCCACTTCAAGTAA
TGAGGGAATAGAAACTAACACCACGATTGCGACGGAGCCCGAagacacaa
caacaacaaccatgGCACCAACAACCACAACTTTCAATACATCATCACTT
AACTTCACACTACCGGCTAACACATCAGCAGAAGATTTCTTTGGTACAAA
CACTAGCAACTGGGGAAGTGACGCAAACCACTACAAGTCATCCATGCTAC
ACACGCTTTTCTCTATGTCCTTCATCGCCATTTGCACTTTTGCTTTATTT
TAACATCTTTAAACACGAATATAAAATTCAGGTGAAAATTCGAGAAGCCT
GAATCTACCAACGACCATTTGGTTCGAAACTCGTCAGTTTcttacccaga
gccacttgaTTTTTctgatggacgtgatacaatCCTTTTGGTAACGCCAT
CagaattatcaaaaagtgagcTAAGGGACTGGATACAAAACTGTATGTTA
AATTTTAATTGAGACAAGGATATATCGGTCAATGATCGAATCATCGGAAT
ACATTTAAAAAATGGTTGTCCCAATGAAAACGAAAGACACTGGAACCACA
CGCCATTTTTGAATGTCTTGGcaaaaaaatgtgtaacaaTAACAAACATT
CTTGTGGATGTCGTAAAAAAGATGCCTGAAAGATTTTGGATTATCTCTGA
AAAtggaatttttgcaattttccttTGAAACTCTTTTCTCTCTACAGGGT
GTGGTCGGACAAAAATTATCCTACTTGCAGAGCAACCAGTgtcatagaaa
ttttatttctctttttgtttattgCGCTGGAACTCTCGTCATAAGTGCTC
CCACTAGTGGGCCCATTAGACACTTTTCTCATGTCAGATACATAATGCAT
TCAACAAAAATTCGTCTGTCGTTAGTTTTTCATTGTAAAATAgataaaat
ttaacttttttcctCCAGCTAAGCACCCCAGTGGACTTCACACAATCatg
caaatttttttcccaaattcatgTATTAACGCaatgttttttttgcaata
cactcttctcgagatgcataaatttattgttgtcctcgttttcaaacaga
tttcattgctatgaaattatacatttaaaccaatttaaattcccaaaagg
cagccattaactctaaaacaaaagtgcttgaaattcaaaatgtctcatga
ggtgtaaacaacacacttatcattgtgaatatgtaattttatagcaatga
aatctgtttgaaaacgaggacaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011268	XLOC_011268	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000348	supercontig	sc0000348:232894..239216 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101683	0.0489473	0.0568088	0.170013	0.438316	0.216237	0	0.281832	0.393114	0.592624	0.321421	0	0	1.4744	0.122496	0.0704421	0.170627	0	0	0	0	0.452738	1.27703e-07	0.290596	0	0.000640887	0.301765	0.149503	0.0554827	0.0376746

Blast

[Close]

BLAST of TCONS_00020047 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.030e-26
Identity = 71/223 (31.84%), Postives = 108/223 (48.43%), Query Frame = 1

Query:  217 FHHRGKRATLVDERYMWPNNTVPYVFDTVNPVNEELRNLTIAAVHHIEKYSCIRFKELTDEGYYVNITNSGPGCYSYLGFINYGPAEYGQTLNLADDCNGMEVTIHEFLHALGYYHEHSRPDRSDYITLNMSNILPGMETQFTKVNLTHGDEAGPVTLQNISYDIMSIMHYGQYAFTKHQQLTYGRQDQMTMYSNDDYMAQLGG--YSLSEKDIIRLNTKYNC 879
            F  R +RAT      +WP   +PYV           R +   A+ H EK++C+ F E TDE  ++  +    GC SY+G    GP    Q +++  +C+   +  HE  H +G++HEH+RPDR  ++T+   NI PG E  F K+      EAG V+    +YD  SIMHY +  F++   L     D +    +D+ +    G    LS+ DI +    Y C
Sbjct:  143 FSPRVRRATTSRTERIWPGGVIPYVIG--GNFTGSQRAIFKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGP----QAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKM------EAGEVSSLGETYDFDSIMHYARNTFSRGVFL-----DTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKC 348

The following BLAST results are available for this feature:

BLAST of TCONS_00020047 vs. Swiss-Prot (Human)

BLAST of TCONS_00020047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TLL2	1.030e-26	31.84	Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=...	[more]

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TCONS_00020047 (transcript) - C. hemisphaerica