TCONS_00020035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020035
Unique NameTCONS_00020035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020035 ID=TCONS_00020035|Name=TCONS_00020035|organism=Clytia hemisphaerica|type=transcript|length=1796bp
AAAATAATGAGATGTAAGTGCTGTCATATAATCATTCTTTTCTGATTGTA
TACAAGAGGAATGCAGTAGCTACAAACATACTAATGGGAGGTTGTTATGG
TGTAGAGAGAGAAATGTGGTGGTTATAAAATTTGTACATCATAGCTTTTA
GAAAGGGATTGGAATTTCATGAAAATGGCTCAAAATCGTGTTGACAGCAA
CATAGTCGGAATAGCGTTGACTCGTTGGGTAATTTTCTATCATGCTTTCC
TGGTTGGACTCGAATACTCCTGTATTTACGTTTCCTTACTATATTACCTT
CAAGAATTACATGTTTATAATGCAGCCATGTATTTCTGTGTGCTGATGAG
TTGTACAAGCACCGGATCACTATTCATGTCTACACTCACCAAACAATTTG
GAAAACTCACATCCAACATTAAATGGTTTCTCGTTGTTCTTGCATTGATT
TCGTTTGTTGGGAATCTTCTTTATACGAGTCATTCGTCTGTTTGGTTTTT
GGTTGTGGGACGTTTGTTGTGCGGATTTGTTGATTCGTCTACTGATGTCA
TTCAAGgaaCTTTCGGGAAATTGTACGCAAACGAACAAAGCAGGCTGATG
GATTTCGCTTCAAAATACGAACTCTTTTACACTTGTGGATTCCTAACTGG
TCCATTGTTTGTGGCGTCGCTATGGAAATACAAAACTCACCTTGGCAACT
GGAGTATTGACCGATATAATGGTGTAGCGTTTATAATGGCGTGGTTTTTC
TTGCTTGATGCTTTACTGATGATGTGCTGTGGACAGAATTTAAACAACCT
TGTGGTGGAGCAAGAAGAAGACAATAAGGTTGATCAAGCTTTTGAAGAAG
ACAACAAAGAATTGACGCAAAAAACAAACTTGGAACGCTACCTGCGATTG
AAAAAGGGTAGCAccgaaaatttaatgaaaaatgatgacgtcatcacaga
CAGGCAACCTCATTGGTTGATATTATTGATTTTTGCACATTCTCTACTCA
TCAATTTCATCTGCAACACCTCCGAAATGCTAGTGGTCATTCTGTCAGTG
CAGAGAATCAAACTTCCACCcatcaacttttatttcttaGTGGTGTCATG
TctctttatttttatgtttggtGTGACCAAAGTGTGGCGGAAATTTTTCA
ATGACGTTACCAAGAGAGTTGCACCCATGCTTTTATGTGTTGCTATCTCA
ATTCTTTCAAACGTGCTTCTGATTGTAATAAGCAGTACGACATTTGGTGG
CTaccattttaaaacgttttGTATGTTTCTCGTTATTTTATTGAACTCTT
TGACAGCTTTCACAATCAGTCCAGCAACTCAGAACCTGATCGCTGTCCTG
TTTCATAACGATCAACAAAGGTTCGAACAGGATGTTAAACGGTGGTTGAT
GATTTATCGTGTGTTTGGTATCTGTGGTCTGGTACTGGCTGGCTTTATCG
TGCACCATTTATGGGTCATTTATGTTTGCTTCATTGGAatacaaattttg
ttttctatGACGATTTTATTGAACAAGTCACAATTGTCATCTGAAAGTAA
CTGAATAGTTTTATTTCCGATTTGTACAATAGTATGACAGACTGGTGATG
CTTGTTTTGATCATCATCTAAACTAAAGCTACGTCTTACTAATATTTAGC
TTTTTATTGTAGAATTACACCATGAACAAGGATGTACAAATGTAATTTAT
CAGAGTAAATTTTAAGTCcgttgttggttgttgaaaagaaattctttaat
tcttgcattttttccatattctaccgttggaaaaataaaaaaagaa
Run BLAST on NCBI

transcript from alignment at sc0000348:148677..153152+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020035 ID=TCONS_00020035|Name=TCONS_00020035|organism=Clytia hemisphaerica|type=transcript|length=4476bp|location=Sequence derived from alignment at sc0000348:148677..153152+ (Clytia hemisphaerica)
AAAATAATGAGATGTAAGTGCTGTCATATAATCATTCTTTTCTGATTGTA
TACAAGAGGAATGCAGTAGCTACAAACATACTAATGGGAGGTTGTTATGG
TGTAGAGAGAGAAATGTGGTGGTTATAAAATTTGTACATCATAGCTTTTA
GAAAGGGATTGGAATTTCATGAAAATGGCTCAAAATCGTGTTGACAGCAA
CATAGTCGGAATAGCGTTGACTCGTTGGGTAATTTTCTATCATGCTTTCC
TGGTTGGACTCGAATACTCCTGTATTTACGTTTCCTTACTATATTACCTT
CAAGAATTACATGTTTATAATGCAGCCATGTATTTCTGTGTGCTGATGAG
TTGTACAAGCACCGGATCACTATTCATGTCTACACTCACCAAACAATTTG
GAAAACTCACATCCAACATTAAATGGTTTCTCGTTGTTCTTGCATTGATT
TCGTTTGTTGGGAATCTTCTTTATACGAGTCATTCGTCTGTTTGGTTTTT
GGTTGTGGGACGTTTGTTGTGCGGATTTGTTGATTCGTCTACTGATGTCA
TTCAAGGTAAACTTTAGGAAGAACGCGACGGTCTATTGAATAGAAAATTA
CACTCCGTCATATATTACTTCCCTCAGCCATTACAAACGGGGCAAATCAT
ATTGTCCCTAGGTAACTGCTGTgttgtaaaagaaaaattaatgataaCTA
GATATTAATattaactagtcatagctttcactaaatgccccaaCATAAAA
NAATAAatccacaaggtaaccaatcagaaatagcttgttttttttcattg
gctgctatatttcaacatttctctattgctactttgcctaataaacaata
atcaagaggatactgcgtataaaatttatcaaaaagttctgcgccatctt
aagttgggtgaaatagaaactcacttatcctagtcaaggcccgggctcca
ctagcgtacgctgtgattgcacttctcaagcaaaatcttctatgttgttg
gtcaaaagaaaagtagaggaatgccattgtggttcattcagatttacagt
cgagaaaagttaaaatgcgccGATTACAAATGTCGCGCTATTTATATATC
CACGTGACCCTACTGGTCACGTGGTCAAACTGTCAATCATAATTTCTATT
CCACGACacgcctaaatttcttttcaagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNactttttgagtttatagctagcgatatactttccctttatggtgt
ttctgtatgactgtctgtgtacctagtctaaccaccgttaaatgccttcg
ggaaggtatctcctaacttagaaagccagaatttggagctatttcaccaa
accactggagcgtaagttatttaggctatcacaatacaactttacatatg
cgtacattcatcttttttgtactttgccggttgttttactaagttaagaa
gaactttctcgagttacgaccatatgatggtatttaaagctcaagaagcc
ctataaacaataaaggtagttatcaataaaatgacagNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaagattctggaaaaataatt
gaaatcattgctgaagtgaacttctgactaaattacagtagttagtattc
agtttcaaagacaagaaacaaaatttgacaaacaaaacactttttcaagt
caatgaatcagctcatcatcataaccagtctgccattttgtttgttttga
tttgcacaagtaatattgtaattcgtgttatatcatacactgttttgatt
tgcatttataacactcgcttttagcttttcaaagctaaatcaaaactaaa
attgtaatatgtaataatgataataccatataacgtaatatgggaaaaac
cgaacatttacggaagagactaactacggacatgcttacgcgacaacaac
aacaacagcaacaacaaaacaattcgcaaagttttgagattccattccaa
tatctatgcgtgaaactatgagtgcctcctcgtcgctacgctcctgcggg
ggcaattaaaAGAACATCCCATTCTCCCAAACAACTAGTTGCTCTtaaca
ctcctgtctcacagccctgtgGAAATTTTTCTCATTGCAGGAATGAAAAT
CTATTGATATCCCAATGGGGGTAGAAGTTATTTGGCTCCAAGCTTCAAAT
ATTCAGGGGAGATGGATTAggcaattttttacattaagattcgaatgggg
atgaaatcagaGTCAATTTCCAAATGAGGCTGAATCTCTAGAGTATTTTT
CCAACCGGGGATGAAGGTTTGGccagattttccagtggggcgggGGTCCC
AGCGAAACTGTGGACACAAGTCTGTCTAGTACGATAAATCTTCCTTTTGT
CAAAGGCCAGATGGGACCCACTACCCATCGGAAAAACTGTTATCGTaaga
gaaaagaaagaaagatctCTCTAAATCATCCTCATCTCAAAATTACGGAA
ATCTATTTACACTACAATTACATTACATTTCTCGTGAAAAGCAGGCTTGA
AAGATAAAGGTAGCTTTCACAATGGGTACCGTAACttagtctaatgtcga
catccatcatctaattttgacaccctttttATTAGCTGAAATTGATGGAA
TGATCaaagctatttttctttgcatagTGGTCAcggaggaataatccttt
ttcaatcagtgtttcaaactttcatagtattcctgtctctaaaaaagggt
gtcgaaattaaaCGAGAGAtatcgatattagaccaacttacggtatttaT
AAATCTTCATATTAGCTCAGTAGTTTCTCAAATCAATGATAACAGTGGTT
TCAGACAGTaatttatgtgttttttttattttaaaggaaCTTTCGGGAAA
TTGTACGCAAACGAACAAAGCAGGCTGATGGATTTCGCTTCAAAATACGA
ACTCTTTTACACTTGTGGATTCCTAACTGGTCCATTGTTTGTGGCGTCGC
TATGGAAATACAAAACTCACCTTGGCAACTGGAGTATTGACCGATATAAT
GGTGTAGCGTTTATAATGGCGTGGTTTTTCTTGCTTGATGCTTTACTGAT
GATGTGCTGTGGACAGAATTTAAACAACCTTGTGGTGGAGCAAGAAGAAG
ACAATAAGGTTGATCAAGCTTTTGAAGAAGACAACAAAGAATTGACGCAA
AAAACAAACTTGGAACGCTACCTGCGATTGAAAAAGGGTAGCAccgaaaa
tttaatgaaaaatgatgacgtcatcacagaCAGGCAACCTCATTGGTTGA
TATTATTGATTTTTGCACATTCTCTACTCATCAATTTCATCTGCAACACC
TCCGAAATGCTAGTGGTCATTCTGTCAGTGCAGAGAATCAAACTTCCACC
catcaacttttatttcttaGTGGTGTCATGTctctttatttttatgtttg
gtGTGACCAAAGTGTGGCGGAAATTTTTCAATGACGTTACCAAGAGAGTT
GCACCCATGCTTTTATGTGTTGCTATCTCAATTCTTTCAAACGTGCTTCT
GATTGTAATAAGCAGTACGACATTTGGTGGCTaccattttaaaacgtttt
GTATGTTTCTCGTTATTTTATTGAACTCTTTGACAGCTTTCACAATCAGT
CCAGCAACTCAGAACCTGATCGCTGTCCTGTTTCATAACGATCAACAAAG
GTTCGAACAGGATGTTAAACGGTGGTTGATGATTTATCGTGTGTTTGGTA
TCTGTGGTCTGGTACTGGCTGGCTTTATCGTGCACCATTTATGGGTCATT
TATGTTTGCTTCATTGGAatacaaattttgttttctatGACGATTTTATT
GAACAAGTCACAATTGTCATCTGAAAGTAACTGAATAGTTTTATTTCCGA
TTTGTACAATAGTATGACAGACTGGTGATGCTTGTTTTGATCATCATCTA
AACTAAAGCTACGTCTTACTAATATTTAGCTTTTTATTGTAGAATTACAC
CATGAACAAGGATGTACAAATGTAATTTATCAGAGTAAATTTTAAGTCcg
ttgttggttgttgaaaagaaattctttaattcttgcattttttccatatt
ctaccgttggaaaaataaaaaaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011261XLOC_011261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020035-exon-sc0000348-1491911889:148677..149232TCONS_00020035-exon-sc0000348-1491911889:148677..149232Clytia hemisphaericaexon
TCONS_00020035-exon-sc0000348-1510915933:148677..149232TCONS_00020035-exon-sc0000348-1510915933:148677..149232Clytia hemisphaericaexon
TCONS_00020035-exon-sc0000348-1575043694:148677..149232TCONS_00020035-exon-sc0000348-1575043694:148677..149232Clytia hemisphaericaexon
TCONS_00020035-exon-sc0000348-1491911889:151913..153152TCONS_00020035-exon-sc0000348-1491911889:151913..153152Clytia hemisphaericaexon
TCONS_00020035-exon-sc0000348-1510915933:151913..153152TCONS_00020035-exon-sc0000348-1510915933:151913..153152Clytia hemisphaericaexon
TCONS_00020035-exon-sc0000348-1575043694:151913..153152TCONS_00020035-exon-sc0000348-1575043694:151913..153152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:148677..153152 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.08159	5.88503	2.13491	1.4501	5.61435	4.12941	0.857424	1.98331	3.2899	3.6565	6.23842	5.00887	4.56274	7.4766	1.20064	0.395037	0.575538	1.08225	2.70874	1.67854	1.1846	2.10482	5.47223	4.8829	2.05191	2.82661	2.29927	11.0658	1.65454	1.72552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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