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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020035 ID=TCONS_00020035|Name=TCONS_00020035|organism=Clytia hemisphaerica|type=transcript|length=1796bp
AAAATAATGAGATGTAAGTGCTGTCATATAATCATTCTTTTCTGATTGTA
TACAAGAGGAATGCAGTAGCTACAAACATACTAATGGGAGGTTGTTATGG
TGTAGAGAGAGAAATGTGGTGGTTATAAAATTTGTACATCATAGCTTTTA
GAAAGGGATTGGAATTTCATGAAAATGGCTCAAAATCGTGTTGACAGCAA
CATAGTCGGAATAGCGTTGACTCGTTGGGTAATTTTCTATCATGCTTTCC
TGGTTGGACTCGAATACTCCTGTATTTACGTTTCCTTACTATATTACCTT
CAAGAATTACATGTTTATAATGCAGCCATGTATTTCTGTGTGCTGATGAG
TTGTACAAGCACCGGATCACTATTCATGTCTACACTCACCAAACAATTTG
GAAAACTCACATCCAACATTAAATGGTTTCTCGTTGTTCTTGCATTGATT
TCGTTTGTTGGGAATCTTCTTTATACGAGTCATTCGTCTGTTTGGTTTTT
GGTTGTGGGACGTTTGTTGTGCGGATTTGTTGATTCGTCTACTGATGTCA
TTCAAGgaaCTTTCGGGAAATTGTACGCAAACGAACAAAGCAGGCTGATG
GATTTCGCTTCAAAATACGAACTCTTTTACACTTGTGGATTCCTAACTGG
TCCATTGTTTGTGGCGTCGCTATGGAAATACAAAACTCACCTTGGCAACT
GGAGTATTGACCGATATAATGGTGTAGCGTTTATAATGGCGTGGTTTTTC
TTGCTTGATGCTTTACTGATGATGTGCTGTGGACAGAATTTAAACAACCT
TGTGGTGGAGCAAGAAGAAGACAATAAGGTTGATCAAGCTTTTGAAGAAG
ACAACAAAGAATTGACGCAAAAAACAAACTTGGAACGCTACCTGCGATTG
AAAAAGGGTAGCAccgaaaatttaatgaaaaatgatgacgtcatcacaga
CAGGCAACCTCATTGGTTGATATTATTGATTTTTGCACATTCTCTACTCA
TCAATTTCATCTGCAACACCTCCGAAATGCTAGTGGTCATTCTGTCAGTG
CAGAGAATCAAACTTCCACCcatcaacttttatttcttaGTGGTGTCATG
TctctttatttttatgtttggtGTGACCAAAGTGTGGCGGAAATTTTTCA
ATGACGTTACCAAGAGAGTTGCACCCATGCTTTTATGTGTTGCTATCTCA
ATTCTTTCAAACGTGCTTCTGATTGTAATAAGCAGTACGACATTTGGTGG
CTaccattttaaaacgttttGTATGTTTCTCGTTATTTTATTGAACTCTT
TGACAGCTTTCACAATCAGTCCAGCAACTCAGAACCTGATCGCTGTCCTG
TTTCATAACGATCAACAAAGGTTCGAACAGGATGTTAAACGGTGGTTGAT
GATTTATCGTGTGTTTGGTATCTGTGGTCTGGTACTGGCTGGCTTTATCG
TGCACCATTTATGGGTCATTTATGTTTGCTTCATTGGAatacaaattttg
ttttctatGACGATTTTATTGAACAAGTCACAATTGTCATCTGAAAGTAA
CTGAATAGTTTTATTTCCGATTTGTACAATAGTATGACAGACTGGTGATG
CTTGTTTTGATCATCATCTAAACTAAAGCTACGTCTTACTAATATTTAGC
TTTTTATTGTAGAATTACACCATGAACAAGGATGTACAAATGTAATTTAT
CAGAGTAAATTTTAAGTCcgttgttggttgttgaaaagaaattctttaat
tcttgcattttttccatattctaccgttggaaaaataaaaaaagaa Run BLAST on NCBI transcript from alignment at sc0000348:148677..153152+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020035 ID=TCONS_00020035|Name=TCONS_00020035|organism=Clytia hemisphaerica|type=transcript|length=4476bp|location=Sequence derived from alignment at sc0000348:148677..153152+ (Clytia hemisphaerica)
AAAATAATGAGATGTAAGTGCTGTCATATAATCATTCTTTTCTGATTGTA
TACAAGAGGAATGCAGTAGCTACAAACATACTAATGGGAGGTTGTTATGG
TGTAGAGAGAGAAATGTGGTGGTTATAAAATTTGTACATCATAGCTTTTA
GAAAGGGATTGGAATTTCATGAAAATGGCTCAAAATCGTGTTGACAGCAA
CATAGTCGGAATAGCGTTGACTCGTTGGGTAATTTTCTATCATGCTTTCC
TGGTTGGACTCGAATACTCCTGTATTTACGTTTCCTTACTATATTACCTT
CAAGAATTACATGTTTATAATGCAGCCATGTATTTCTGTGTGCTGATGAG
TTGTACAAGCACCGGATCACTATTCATGTCTACACTCACCAAACAATTTG
GAAAACTCACATCCAACATTAAATGGTTTCTCGTTGTTCTTGCATTGATT
TCGTTTGTTGGGAATCTTCTTTATACGAGTCATTCGTCTGTTTGGTTTTT
GGTTGTGGGACGTTTGTTGTGCGGATTTGTTGATTCGTCTACTGATGTCA
TTCAAGGTAAACTTTAGGAAGAACGCGACGGTCTATTGAATAGAAAATTA
CACTCCGTCATATATTACTTCCCTCAGCCATTACAAACGGGGCAAATCAT
ATTGTCCCTAGGTAACTGCTGTgttgtaaaagaaaaattaatgataaCTA
GATATTAATattaactagtcatagctttcactaaatgccccaaCATAAAA
NAATAAatccacaaggtaaccaatcagaaatagcttgttttttttcattg
gctgctatatttcaacatttctctattgctactttgcctaataaacaata
atcaagaggatactgcgtataaaatttatcaaaaagttctgcgccatctt
aagttgggtgaaatagaaactcacttatcctagtcaaggcccgggctcca
ctagcgtacgctgtgattgcacttctcaagcaaaatcttctatgttgttg
gtcaaaagaaaagtagaggaatgccattgtggttcattcagatttacagt
cgagaaaagttaaaatgcgccGATTACAAATGTCGCGCTATTTATATATC
CACGTGACCCTACTGGTCACGTGGTCAAACTGTCAATCATAATTTCTATT
CCACGACacgcctaaatttcttttcaagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNactttttgagtttatagctagcgatatactttccctttatggtgt
ttctgtatgactgtctgtgtacctagtctaaccaccgttaaatgccttcg
ggaaggtatctcctaacttagaaagccagaatttggagctatttcaccaa
accactggagcgtaagttatttaggctatcacaatacaactttacatatg
cgtacattcatcttttttgtactttgccggttgttttactaagttaagaa
gaactttctcgagttacgaccatatgatggtatttaaagctcaagaagcc
ctataaacaataaaggtagttatcaataaaatgacagNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaagattctggaaaaataatt
gaaatcattgctgaagtgaacttctgactaaattacagtagttagtattc
agtttcaaagacaagaaacaaaatttgacaaacaaaacactttttcaagt
caatgaatcagctcatcatcataaccagtctgccattttgtttgttttga
tttgcacaagtaatattgtaattcgtgttatatcatacactgttttgatt
tgcatttataacactcgcttttagcttttcaaagctaaatcaaaactaaa
attgtaatatgtaataatgataataccatataacgtaatatgggaaaaac
cgaacatttacggaagagactaactacggacatgcttacgcgacaacaac
aacaacagcaacaacaaaacaattcgcaaagttttgagattccattccaa
tatctatgcgtgaaactatgagtgcctcctcgtcgctacgctcctgcggg
ggcaattaaaAGAACATCCCATTCTCCCAAACAACTAGTTGCTCTtaaca
ctcctgtctcacagccctgtgGAAATTTTTCTCATTGCAGGAATGAAAAT
CTATTGATATCCCAATGGGGGTAGAAGTTATTTGGCTCCAAGCTTCAAAT
ATTCAGGGGAGATGGATTAggcaattttttacattaagattcgaatgggg
atgaaatcagaGTCAATTTCCAAATGAGGCTGAATCTCTAGAGTATTTTT
CCAACCGGGGATGAAGGTTTGGccagattttccagtggggcgggGGTCCC
AGCGAAACTGTGGACACAAGTCTGTCTAGTACGATAAATCTTCCTTTTGT
CAAAGGCCAGATGGGACCCACTACCCATCGGAAAAACTGTTATCGTaaga
gaaaagaaagaaagatctCTCTAAATCATCCTCATCTCAAAATTACGGAA
ATCTATTTACACTACAATTACATTACATTTCTCGTGAAAAGCAGGCTTGA
AAGATAAAGGTAGCTTTCACAATGGGTACCGTAACttagtctaatgtcga
catccatcatctaattttgacaccctttttATTAGCTGAAATTGATGGAA
TGATCaaagctatttttctttgcatagTGGTCAcggaggaataatccttt
ttcaatcagtgtttcaaactttcatagtattcctgtctctaaaaaagggt
gtcgaaattaaaCGAGAGAtatcgatattagaccaacttacggtatttaT
AAATCTTCATATTAGCTCAGTAGTTTCTCAAATCAATGATAACAGTGGTT
TCAGACAGTaatttatgtgttttttttattttaaaggaaCTTTCGGGAAA
TTGTACGCAAACGAACAAAGCAGGCTGATGGATTTCGCTTCAAAATACGA
ACTCTTTTACACTTGTGGATTCCTAACTGGTCCATTGTTTGTGGCGTCGC
TATGGAAATACAAAACTCACCTTGGCAACTGGAGTATTGACCGATATAAT
GGTGTAGCGTTTATAATGGCGTGGTTTTTCTTGCTTGATGCTTTACTGAT
GATGTGCTGTGGACAGAATTTAAACAACCTTGTGGTGGAGCAAGAAGAAG
ACAATAAGGTTGATCAAGCTTTTGAAGAAGACAACAAAGAATTGACGCAA
AAAACAAACTTGGAACGCTACCTGCGATTGAAAAAGGGTAGCAccgaaaa
tttaatgaaaaatgatgacgtcatcacagaCAGGCAACCTCATTGGTTGA
TATTATTGATTTTTGCACATTCTCTACTCATCAATTTCATCTGCAACACC
TCCGAAATGCTAGTGGTCATTCTGTCAGTGCAGAGAATCAAACTTCCACC
catcaacttttatttcttaGTGGTGTCATGTctctttatttttatgtttg
gtGTGACCAAAGTGTGGCGGAAATTTTTCAATGACGTTACCAAGAGAGTT
GCACCCATGCTTTTATGTGTTGCTATCTCAATTCTTTCAAACGTGCTTCT
GATTGTAATAAGCAGTACGACATTTGGTGGCTaccattttaaaacgtttt
GTATGTTTCTCGTTATTTTATTGAACTCTTTGACAGCTTTCACAATCAGT
CCAGCAACTCAGAACCTGATCGCTGTCCTGTTTCATAACGATCAACAAAG
GTTCGAACAGGATGTTAAACGGTGGTTGATGATTTATCGTGTGTTTGGTA
TCTGTGGTCTGGTACTGGCTGGCTTTATCGTGCACCATTTATGGGTCATT
TATGTTTGCTTCATTGGAatacaaattttgttttctatGACGATTTTATT
GAACAAGTCACAATTGTCATCTGAAAGTAACTGAATAGTTTTATTTCCGA
TTTGTACAATAGTATGACAGACTGGTGATGCTTGTTTTGATCATCATCTA
AACTAAAGCTACGTCTTACTAATATTTAGCTTTTTATTGTAGAATTACAC
CATGAACAAGGATGTACAAATGTAATTTATCAGAGTAAATTTTAAGTCcg
ttgttggttgttgaaaagaaattctttaattcttgcattttttccatatt
ctaccgttggaaaaataaaaaaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020035-exon-sc0000348-1491911889:148677..149232 | TCONS_00020035-exon-sc0000348-1491911889:148677..149232 | Clytia hemisphaerica | exon |
| TCONS_00020035-exon-sc0000348-1510915933:148677..149232 | TCONS_00020035-exon-sc0000348-1510915933:148677..149232 | Clytia hemisphaerica | exon |
| TCONS_00020035-exon-sc0000348-1575043694:148677..149232 | TCONS_00020035-exon-sc0000348-1575043694:148677..149232 | Clytia hemisphaerica | exon |
| TCONS_00020035-exon-sc0000348-1491911889:151913..153152 | TCONS_00020035-exon-sc0000348-1491911889:151913..153152 | Clytia hemisphaerica | exon |
| TCONS_00020035-exon-sc0000348-1510915933:151913..153152 | TCONS_00020035-exon-sc0000348-1510915933:151913..153152 | Clytia hemisphaerica | exon |
| TCONS_00020035-exon-sc0000348-1575043694:151913..153152 | TCONS_00020035-exon-sc0000348-1575043694:151913..153152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:148677..153152 + |
Blast
The following BLAST results are available for this feature:
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