TCONS_00020024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020024
Unique NameTCONS_00020024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020024 ID=TCONS_00020024|Name=TCONS_00020024|organism=Clytia hemisphaerica|type=transcript|length=364bp
ATCGGCCCAGGCCCagaatacaaaaaagaaaacaatactTACAACCAAAT
TGACCAATCATGGGACGCAAATAAAACAAGAACAATAGGTCTATTCTCAC
AGAAAaccacaaaatcaaaaatttgaaaccaCGAGATCCTTCTCTAATCA
AAAGCAAAGCTTCATCTATGGAAAACACATTTATCGAAGGTGAGAATGAA
TAATTACTTATATCTTATGAATCTTAAAAATCCAAACTCTAAACCAatat
aacttttgaaaaggaaaatgagTTATGCTACCATTGATATCTTAATGCAC
CGCTAACCTGTGACTAAGGCGTTTTCCTCATGGAAAACCAAGGACATAGT
TTCCTTGTTGTAAC
Run BLAST on NCBI

transcript from alignment at sc0000345:348650..349013

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020024 ID=TCONS_00020024|Name=TCONS_00020024|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0000345:348650..349013 (Clytia hemisphaerica)
GTTACAACAAGGAAACTATGTCCTTGGTTTTCCATGAGGAAAACGCCTTA
GTCACAGGTTAGCGGTGCATTAAGATATCAATGGTAGCATAActcatttt
ccttttcaaaagttatatTGGTTTAGAGTTTGGATTTTTAAGATTCATAA
GATATAAGTAATTATTCATTCTCACCTTCGATAAATGTGTTTTCCATAGA
TGAAGCTTTGCTTTTGATTAGAGAAGGATCTCGtggtttcaaatttttga
ttttgtggtTTTCTGTGAGAATAGACCTATTGTTCTTGTTTTATTTGCGT
CCCATGATTGGTCAATTTGGTTGTAagtattgttttcttttttgtattct
GGGCCTGGGCCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011256XLOC_011256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020024-exon-sc0000345-1491911889:348650..349013TCONS_00020024-exon-sc0000345-1491911889:348650..349013Clytia hemisphaericaexon
TCONS_00020024-exon-sc0000345-1510915933:348650..349013TCONS_00020024-exon-sc0000345-1510915933:348650..349013Clytia hemisphaericaexon
TCONS_00020024-exon-sc0000345-1575043694:348650..349013TCONS_00020024-exon-sc0000345-1575043694:348650..349013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:348650..349013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228889	0	0	0	0.617338	0	0.294272	0.550989	0	0	2.08705	0.304877	0.608907	0	0.519882	0.278957	0.171826	0.176116	0.486627	1.01844	0.663908	0.323831	0.787318	0.954381	0.491495	0	1.88311	1.67476	1.01619	0.517671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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