TCONS_00020011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020011
Unique NameTCONS_00020011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020011 ID=TCONS_00020011|Name=TCONS_00020011|organism=Clytia hemisphaerica|type=transcript|length=285bp
TTATGTTCTCGAATTTACCTATCGTTAAAACGTGGCATTTGTCGGGGTGG
AATTTCAACAGCCACTCACGGGACCATCTTTCAAGTGCTTCAATGTCATT
TTATACGATTAAGGAGTCAAGAATGGAATTGATTTCCTTTATAATCTTCG
TGTCGTCTGCAAACAAGAAAATGCTTGATAGAACATGTTCTGGCAGGTCA
TTAatatgttggacggtgaaaaagaatgcggctattatattttgattttt
cccgacatgtttcggactcggtccgttctcaaggg
Run BLAST on NCBI

transcript from alignment at sc0000345:191552..191836

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020011 ID=TCONS_00020011|Name=TCONS_00020011|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at sc0000345:191552..191836 (Clytia hemisphaerica)
cccttgagaacggaccgagtccgaaacatgtcgggaaaaatcaaaatata
atagccgcattctttttcaccgtccaacatatTAATGACCTGCCAGAACA
TGTTCTATCAAGCATTTTCTTGTTTGCAGACGACACGAAGATTATAAAGG
AAATCAATTCCATTCTTGACTCCTTAATCGTATAAAATGACATTGAAGCA
CTTGAAAGATGGTCCCGTGAGTGGCTGTTGAAATTCCACCCCGACAAATG
CCACGTTTTAACGATAGGTAAATTCGAGAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011243XLOC_011243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020011-exon-sc0000345-1491911889:191552..191836TCONS_00020011-exon-sc0000345-1491911889:191552..191836Clytia hemisphaericaexon
TCONS_00020011-exon-sc0000345-1510915933:191552..191836TCONS_00020011-exon-sc0000345-1510915933:191552..191836Clytia hemisphaericaexon
TCONS_00020011-exon-sc0000345-1575043694:191552..191836TCONS_00020011-exon-sc0000345-1575043694:191552..191836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:191552..191836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.0553	0.843223	0.673458	0	0	0	0	0.498125	3.52801	0	0.479087	1.50118	3.79861	1.80073	2.6905	0.138696	2.39214	2.50714	3.23886	1.30788	2.34389	0	0	0	1.51129	2.49835	0	4.40476	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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