TCONS_00020006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020006
Unique NameTCONS_00020006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020006 ID=TCONS_00020006|Name=TCONS_00020006|organism=Clytia hemisphaerica|type=transcript|length=605bp
CAACGACATCCACATGCAATTTGGACTTGACAAGTGCAACATCATGTCAG
TTCGAAAAGGAAAGTTGACCCGGGGAAACGATATTATTCTCCAAAGTGAA
GAAACCATCAAAGCACTTGATCTACGCGACCAATACAAATACCTCGGAAT
GCTATAATCTAATGAGATCGACAAGAAGCAAATGCGCAGCAAGTTCCGAG
CTGAATACTTTACCcgaataaagaaaattttaaaatcctcgTTAAACAGC
AAAAACACCATCCAAGCGATCAACACCTTCGCAGTACCATCAATCTCATA
TGGATTCCAAGTTCTAGATTGGTCCGTGACCGAGCTTGAAGATATTGACC
GTCAAACAAGAAACGTCCTTCGACAACATCACATGCTCCACCTAAAAAGC
GACGTCGCCCGAGTGTACATCCCACGTAGAAATGGAGGAAGAGGTTTACT
CAacatcacagacctctacaaaaaaCAAATCATTCAATACAGTAAATACC
TTAAAAACTCCACCGAACATCTCCTGATATTAGTATCAACGTCACAAACC
GACAGAGGAGCAAAATCCCTCCACCAAAAAGCCGAGAAGTACCTAGCAGA
ACTCA
Run BLAST on NCBI

protein sequence of TCONS_00020006-protein

>TCONS_00020006-protein ID=TCONS_00020006-protein|Name=TCONS_00020006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MRSKFRAEYFTRIKKILKSSLNSKNTIQAINTFAVPSISYGFQVLDWSVT
ELEDIDRQTRNVLRQHHMLHLKSDVARVYIPRRNGGRGLLNITDLYKKQI
IQYSKYLKNSTEHLLILVSTSQTDRGAKSLHQKAEKYLAEL
Run BLAST on NCBI

transcript from alignment at sc0000345:80899..81503

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020006 ID=TCONS_00020006|Name=TCONS_00020006|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at sc0000345:80899..81503 (Clytia hemisphaerica)
TGAGTTCTGCTAGGTACTTCTCGGCTTTTTGGTGGAGGGATTTTGCTCCT
CTGTCGGTTTGTGACGTTGATACTAATATCAGGAGATGTTCGGTGGAGTT
TTTAAGGTATTTACTGTATTGAATGATTTGttttttgtagaggtctgtga
tgtTGAGTAAACCTCTTCCTCCATTTCTACGTGGGATGTACACTCGGGCG
ACGTCGCTTTTTAGGTGGAGCATGTGATGTTGTCGAAGGACGTTTCTTGT
TTGACGGTCAATATCTTCAAGCTCGGTCACGGACCAATCTAGAACTTGGA
ATCCATATGAGATTGATGGTACTGCGAAGGTGTTGATCGCTTGGATGGTG
TTTTTGCTGTTTAAcgaggattttaaaattttctttattcgGGTAAAGTA
TTCAGCTCGGAACTTGCTGCGCATTTGCTTCTTGTCGATCTCATTAGATT
ATAGCATTCCGAGGTATTTGTATTGGTCGCGTAGATCAAGTGCTTTGATG
GTTTCTTCACTTTGGAGAATAATATCGTTTCCCCGGGTCAACTTTCCTTT
TCGAACTGACATGATGTTGCACTTGTCAAGTCCAAATTGCATGTGGATGT
CGTTG

Coding sequence (CDS) from alignment at sc0000345:80899..81503

>TCONS_00020006 ID=TCONS_00020006|Name=TCONS_00020006|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000345:80899..81503 (Clytia hemisphaerica)
GAGTTCTGCTAGGTACTTCTCGGCTTTTTGGTGGAGGGATTTTGCTCCTC
TGTCGGTTTGTGACGTTGATACTAATATCAGGAGATGTTCGGTGGAGTTT
TTAAGGTATTTACTGTATTGAATGATTTGttttttgtagaggtctgtgat
gtTGAGTAAACCTCTTCCTCCATTTCTACGTGGGATGTACACTCGGGCGA
CGTCGCTTTTTAGGTGGAGCATGTGATGTTGTCGAAGGACGTTTCTTGTT
TGACGGTCAATATCTTCAAGCTCGGTCACGGACCAATCTAGAACTTGGAA
TCCATATGAGATTGATGGTACTGCGAAGGTGTTGATCGCTTGGATGGTGT
TTTTGCTGTTTAAcgaggattttaaaattttctttattcgGGTAAAGTAT
TCAGCTCGGAACTTGCTGCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011238XLOC_011238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020006-proteinTCONS_00020006-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020006-exon-sc0000345-1491911889:80899..81503TCONS_00020006-exon-sc0000345-1491911889:80899..81503Clytia hemisphaericaexon
TCONS_00020006-exon-sc0000345-1510915933:80899..81503TCONS_00020006-exon-sc0000345-1510915933:80899..81503Clytia hemisphaericaexon
TCONS_00020006-exon-sc0000345-1575043694:80899..81503TCONS_00020006-exon-sc0000345-1575043694:80899..81503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:80899..81503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.447951	0.28663	0.710071	0.694693	0.241635	0.190943	0.345547	0.688039	0.075496	0.187028	0	0.537	0.536253	0.371269	0.218821	0.382156	0.336275	0.620409	0.476182	0.298974	0.173242	0.126752	0.102722	0.186779	1.7314	0.772618	0	0	0.596629	0.562055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top