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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019980 ID=TCONS_00019980|Name=TCONS_00019980|organism=Clytia hemisphaerica|type=transcript|length=1106bp
GATTGTAAAAACACCTGATAATgTTTAAAGGACATATGGAAAACCCTTCG
CGAGGATTTTAAAAGAAGCCATGAAAGACgaaacaagaaaaaagaagCCA
GTTGCAACTTTtacaaagaattgaaattcttAACAGATGTCGTGATTAAA
AACCCGAATCCCGCTGGAGAGTCAACATTGACAGCCAATAAAAATGTAAT
CTGTGGTGAGAAAATTCCAAGAGGTTTACAAACGAATTCGTCTTCTTTGC
CAAAAGCTATCGATTCTCATCATACATCTTTGTATTCTGATGACACCACA
TCGAGCACAGGTGTTGATTTTGACAAAACCTCCCCAAATGATGTGCCAGT
ATTCTGTATATCGGATGATAATACTGATACGGAGACGAGAAATGTACAAA
ACGTAGACCAAGAGTCTAAGTCTTTGGTAACGGAACAGACTTCTTCCTTG
CCGTTGACAAACAAACACGACAATCAAAGGGGGAACGTGAGTTATCAATC
GTACCAAAACACCAAGGAACATATTTCTGCAGGACTTACTTCCAGTATTT
CTATTGGTCAAGCTGATAGTGAAAGGAATCTTTTACCGTGCAATAACGTA
CCGACAACTTCTTCAGACTTTCCAAAAATGAGCAGAAAGCATCTTACTGA
AAATACTCCTTGCTTTTCAGACGAACCTAATTCTAATCCCATTCATCAAC
AAAACCTTTCAGCTATTAATCGCTTACCGGCTAGGTCCGGTGCTTCAAAT
ACAGAGCATTCAACGGCTTCGACAACATTTGATGACATGGATCCTGCTTA
TTCAGATTCGAATAATCCTAACAACCTCCCATCAACATCAACACCAGCAA
TTACTGGATCTTCTTCATCAATATCATCAGAAAATAATAATGAGATAACC
AATGAGAAATTCAAAAGCGATAATCTGCCACAAAAATATTCCacaacaaa
gaaacaaaagaagaacTCGCATCcaagaagaaaacgaaaacgaaCAGAGC
TTGAATATACAAGAACGAAACGTGCTTCAGCACAAATTTCAAATACTGCA
GAAACTAAAAATCCACTCGCTTCTGAGTTAGTTAAAAGTTTAGAAAGCAA
TGAGAA Run BLAST on NCBI transcript from alignment at sc0000345:268198..269687+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019980 ID=TCONS_00019980|Name=TCONS_00019980|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at sc0000345:268198..269687+ (Clytia hemisphaerica)
GATTGTAAAAACACCTGATAATggtaacttttttgtttatcttcatTTTA
TTCTCGGTCTAAGTAATACTTAAAAACAATCATGAGAGCTATCagaattt
ttaaaagtgaaCTAACGGTCTGGGTTTAACTTTGTGAATTTTCCATAATC
TGAATCATAATATGTACTCTAGCATAACAACACTCAACATTCATGGGGGG
ACGCAAATTCGTTATATATATTACTTATTATACGGAGACTTCGAGTTATA
GATTGTTTTATAAGGGTCTGAGTTTATGTTCCAGTTGAGATTTTATGAAA
CCTCGAAGAAACCTCGTCCCAAAGTCTGTTATCCCTTTTCTTTTATCAAG
AGATGATGTTATTAATACTCTATTCTAActgtattttctttattttactt
CAGTCAGTTTAAAGGACATATGGAAAACCCTTCGCGAGGATTTTAAAAGA
AGCCATGAAAGACgaaacaagaaaaaagaagCCAGTTGCAACTTTtacaa
agaattgaaattcttAACAGATGTCGTGATTAAAAACCCGAATCCCGCTG
GAGAGTCAACATTGACAGCCAATAAAAATGTAATCTGTGGTGAGAAAATT
CCAAGAGGTTTACAAACGAATTCGTCTTCTTTGCCAAAAGCTATCGATTC
TCATCATACATCTTTGTATTCTGATGACACCACATCGAGCACAGGTGTTG
ATTTTGACAAAACCTCCCCAAATGATGTGCCAGTATTCTGTATATCGGAT
GATAATACTGATACGGAGACGAGAAATGTACAAAACGTAGACCAAGAGTC
TAAGTCTTTGGTAACGGAACAGACTTCTTCCTTGCCGTTGACAAACAAAC
ACGACAATCAAAGGGGGAACGTGAGTTATCAATCGTACCAAAACACCAAG
GAACATATTTCTGCAGGACTTACTTCCAGTATTTCTATTGGTCAAGCTGA
TAGTGAAAGGAATCTTTTACCGTGCAATAACGTACCGACAACTTCTTCAG
ACTTTCCAAAAATGAGCAGAAAGCATCTTACTGAAAATACTCCTTGCTTT
TCAGACGAACCTAATTCTAATCCCATTCATCAACAAAACCTTTCAGCTAT
TAATCGCTTACCGGCTAGGTCCGGTGCTTCAAATACAGAGCATTCAACGG
CTTCGACAACATTTGATGACATGGATCCTGCTTATTCAGATTCGAATAAT
CCTAACAACCTCCCATCAACATCAACACCAGCAATTACTGGATCTTCTTC
ATCAATATCATCAGAAAATAATAATGAGATAACCAATGAGAAATTCAAAA
GCGATAATCTGCCACAAAAATATTCCacaacaaagaaacaaaagaagaac
TCGCATCcaagaagaaaacgaaaacgaaCAGAGCTTGAATATACAAGAAC
GAAACGTGCTTCAGCACAAATTTCAAATACTGCAGAAACTAAAAATCCAC
TCGCTTCTGAGTTAGTTAAAAGTTTAGAAAGCAATGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019980-exon-sc0000345-1491911889:268198..268220 | TCONS_00019980-exon-sc0000345-1491911889:268198..268220 | Clytia hemisphaerica | exon |
| TCONS_00019980-exon-sc0000345-1510915933:268198..268220 | TCONS_00019980-exon-sc0000345-1510915933:268198..268220 | Clytia hemisphaerica | exon |
| TCONS_00019980-exon-sc0000345-1575043694:268198..268220 | TCONS_00019980-exon-sc0000345-1575043694:268198..268220 | Clytia hemisphaerica | exon |
| TCONS_00019980-exon-sc0000345-1491911889:268605..269687 | TCONS_00019980-exon-sc0000345-1491911889:268605..269687 | Clytia hemisphaerica | exon |
| TCONS_00019980-exon-sc0000345-1510915933:268605..269687 | TCONS_00019980-exon-sc0000345-1510915933:268605..269687 | Clytia hemisphaerica | exon |
| TCONS_00019980-exon-sc0000345-1575043694:268605..269687 | TCONS_00019980-exon-sc0000345-1575043694:268605..269687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:268198..269687 + |
Blast
The following BLAST results are available for this feature:
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