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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019979 ID=TCONS_00019979|Name=TCONS_00019979|organism=Clytia hemisphaerica|type=transcript|length=1525bp
TGATTTTGTACTATTGTCAAATGAATAACTTCAGGTGTAAATGTAGTAGT
TGGAAACGGTATGCAGATTTAGAGGACGAGATATCAGAAAGACGAATATC
TCAACCGTCATATGGTGAGAATAATTGCATAAGCACTGACAACAATAACA
CCAGCATCGATGCTCCGATAGGTCAAACCGAAAAATCATCACCTACAGTA
TGCGTACCACAAAATATTGAAACTTCAGGATCGCCAAATGATGTTGACCA
AACTCCTCAACATAAAATACCTACACAAGAACATCATACCACAGATTCTG
ATGTTAAATTCTCTCTTATCAAGGAAGTTGAAAAACAACCTTGCATTTGG
AATCCAAAACATACACATTACAAAGACAGGAAAAAGACGAAAGAGGCATG
GGAAGAGATCAGAAAGATTGTAAAAACACCTGATAATgTCAGTTTAAAGG
ACATATGGAAAACCCTTCGCGAGGATTTTAAAAGAAGCCATGAAAGACga
aacaagaaaaaagaagCCAGTTGCAACTTTtacaaagaattgaaattctt
AACAGATGTCGTGATTAAAAACCCGAATCCCGCTGGAGAGTCAACATTGA
CAGCCAATAAAAATGTAATCTGTGGTGAGAAAATTCCAAGAGGTTTACAA
ACGAATTCGTCTTCTTTGCCAAAAGCTATCGATTCTCATCATACATCTTT
GTATTCTGATGACACCACATCGAGCACAGGTGTTGATTTTGACAAAACCT
CCCCAAATGATGTGCCAGTATTCTGTATATCGGATGATAATACTGATACG
GAGACGAGAAATGTACAAAACGTAGACCAAGAGTCTAAGTCTTTGGTAAC
GGAACAGACTTCTTCCTTGCCGTTGACAAACAAACACGACAATCAAAGGG
GGAACGTGAGTTATCAATCGTACCAAAACACCAAGGAACATATTTCTGCA
GGACTTACTTCCAGTATTTCTATTGGTCAAGCTGATAGTGAAAGGAATCT
TTTACCGTGCAATAACGTACCGACAACTTCTTCAGACTTTCCAAAAATGA
GCAGAAAGCATCTTACTGAAAATACTCCTTGCTTTTCAGACGAACCTAAT
TCTAATCCCATTCATCAACAAAACCTTTCAGCTATTAATCGCTTACCGGC
TAGGTCCGGTGCTTCAAATACAGAGCATTCAACGGCTTCGACAACATTTG
ATGACATGGATCCTGCTTATTCAGATTCGAATAATCCTAACAACCTCCCA
TCAACATCAACACCAGCAATTACTGGATCTTCTTCATCAATATCATCAGA
AAATAATAATGAGATAACCAATGAGAAATTCAAAAGCGATAATCTGCCAC
AAAAATATTCCacaacaaagaaacaaaagaagaacTCGCATCcaagaaga
aaacgaaaacgaaCAGAGCTTGAATATACAAGAACGAAACGTGCTTCAGC
ACAAATTTCAAATACTGCAGAAACTAAAAATCCACTCGCTTCTGAGTTAG
TTAAAAGTTTAGAAAGCAATGAGAA Run BLAST on NCBI protein sequence of TCONS_00019979-protein >TCONS_00019979-protein ID=TCONS_00019979-protein|Name=TCONS_00019979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp
ILYYCQMNNFRCKCSSWKRYADLEDEISERRISQPSYGENNCISTDNNNT
SIDAPIGQTEKSSPTVCVPQNIETSGSPNDVDQTPQHKIPTQEHHTTDSD
VKFSLIKEVEKQPCIWNPKHTHYKDRKKTKEAWEEIRKIVKTPDNVSLKD
IWKTLREDFKRSHERRNKKKEASCNFYKELKFLTDVVIKNPNPAGESTLT
ANKNVICGEKIPRGLQTNSSSLPKAIDSHHTSLYSDDTTSSTGVDFDKTS
PNDVPVFCISDDNTDTETRNVQNVDQESKSLVTEQTSSLPLTNKHDNQRG
NVSYQSYQNTKEHISAGLTSSISIGQADSERNLLPCNNVPTTSSDFPKMS
RKHLTENTPCFSDEPNSNPIHQQNLSAINRLPARSGASNTEHSTASTTFD
DMDPAYSDSNNPNNLPSTSTPAITGSSSSISSENNNEITNEKFKSDNLPQ
KYSTTKKQKKNSHPRRKRKRTELEYTRTKRASAQISNTAETKNPLASELV
KSLESNE Run BLAST on NCBI transcript from alignment at sc0000345:267783..269687+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019979 ID=TCONS_00019979|Name=TCONS_00019979|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at sc0000345:267783..269687+ (Clytia hemisphaerica)
TGATTTTGTACTATTGTCAAATGAATAACTTCAGGTGTAAATGTAGTAGT
TGGAAACGGTATGCAGATTTAGAGGACGAGATATCAGAAAGACGAATATC
TCAACCGTCATATGGTGAGAATAATTGCATAAGCACTGACAACAATAACA
CCAGCATCGATGCTCCGATAGGTCAAACCGAAAAATCATCACCTACAGTA
TGCGTACCACAAAATATTGAAACTTCAGGATCGCCAAATGATGTTGACCA
AACTCCTCAACATAAAATACCTACACAAGAACATCATACCACAGATTCTG
ATGTTAAATTCTCTCTTATCAAGGAAGTTGAAAAACAACCTTGCATTTGG
AATCCAAAACATACACATTACAAAGACAGGAAAAAGACGAAAGAGGCATG
GGAAGAGATCAGAAAGATTGTAAAAACACCTGATAATggtaacttttttg
tttatcttcatTTTATTCTCGGTCTAAGTAATACTTAAAAACAATCATGA
GAGCTATCagaatttttaaaagtgaaCTAACGGTCTGGGTTTAACTTTGT
GAATTTTCCATAATCTGAATCATAATATGTACTCTAGCATAACAACACTC
AACATTCATGGGGGGACGCAAATTCGTTATATATATTACTTATTATACGG
AGACTTCGAGTTATAGATTGTTTTATAAGGGTCTGAGTTTATGTTCCAGT
TGAGATTTTATGAAACCTCGAAGAAACCTCGTCCCAAAGTCTGTTATCCC
TTTTCTTTTATCAAGAGATGATGTTATTAATACTCTATTCTAActgtatt
ttctttattttacttCAGTCAGTTTAAAGGACATATGGAAAACCCTTCGC
GAGGATTTTAAAAGAAGCCATGAAAGACgaaacaagaaaaaagaagCCAG
TTGCAACTTTtacaaagaattgaaattcttAACAGATGTCGTGATTAAAA
ACCCGAATCCCGCTGGAGAGTCAACATTGACAGCCAATAAAAATGTAATC
TGTGGTGAGAAAATTCCAAGAGGTTTACAAACGAATTCGTCTTCTTTGCC
AAAAGCTATCGATTCTCATCATACATCTTTGTATTCTGATGACACCACAT
CGAGCACAGGTGTTGATTTTGACAAAACCTCCCCAAATGATGTGCCAGTA
TTCTGTATATCGGATGATAATACTGATACGGAGACGAGAAATGTACAAAA
CGTAGACCAAGAGTCTAAGTCTTTGGTAACGGAACAGACTTCTTCCTTGC
CGTTGACAAACAAACACGACAATCAAAGGGGGAACGTGAGTTATCAATCG
TACCAAAACACCAAGGAACATATTTCTGCAGGACTTACTTCCAGTATTTC
TATTGGTCAAGCTGATAGTGAAAGGAATCTTTTACCGTGCAATAACGTAC
CGACAACTTCTTCAGACTTTCCAAAAATGAGCAGAAAGCATCTTACTGAA
AATACTCCTTGCTTTTCAGACGAACCTAATTCTAATCCCATTCATCAACA
AAACCTTTCAGCTATTAATCGCTTACCGGCTAGGTCCGGTGCTTCAAATA
CAGAGCATTCAACGGCTTCGACAACATTTGATGACATGGATCCTGCTTAT
TCAGATTCGAATAATCCTAACAACCTCCCATCAACATCAACACCAGCAAT
TACTGGATCTTCTTCATCAATATCATCAGAAAATAATAATGAGATAACCA
ATGAGAAATTCAAAAGCGATAATCTGCCACAAAAATATTCCacaacaaag
aaacaaaagaagaacTCGCATCcaagaagaaaacgaaaacgaaCAGAGCT
TGAATATACAAGAACGAAACGTGCTTCAGCACAAATTTCAAATACTGCAG
AAACTAAAAATCCACTCGCTTCTGAGTTAGTTAAAAGTTTAGAAAGCAAT
GAGAA Coding sequence (CDS) from alignment at sc0000345:267783..269687+ >TCONS_00019979 ID=TCONS_00019979|Name=TCONS_00019979|organism=Clytia hemisphaerica|type=CDS|length=3042bp|location=Sequence derived from alignment at sc0000345:267783..269687+ (Clytia hemisphaerica)
ATTTTGTACTATTGTCAAATGAATAACTTCAGGTGTAAATGTAGTAGTTG
GAAACGGTATGCAGATTTAGAGGACGAGATATCAGAAAGACGAATATCTC
AACCGTCATATGGTGAGAATAATTGCATAAGCACTGACAACAATAACACC
AGCATCGATGCTCCGATAGGTCAAACCGAAAAATCATCACCTACAGTATG
CGTACCACAAAATATTGAAACTTCAGGATCGCCAAATGATGTTGACCAAA
CTCCTCAACATAAAATACCTACACAAGAACATCATACCACAGATTCTGAT
GTTAAATTCTCTCTTATCAAGGAAGTTGAAAAACAACCTTGCATTTGGAA
TCCAAAACATACACATTACAAAGACAGGAAAAAGACGAAAGAGGCATGGG
AAGAGATCAGAAAGATTGTAAAAACACCTGATAATgTCAGTTTAAAGGAC
ATATGGAAAACCCTTCGCGAGGATTTTAAAAGAAGCCATGAAAGACgaaa
caagaaaaaagaagCCAGTTGCAACTTTtacaaagaattgaaattcttAA
CAGATGTCGTGATTAAAAACCCGAATCCCGCTGGAGAGTCAACATTGACA
GCCAATAAAAATGTAATCTGTGGTGAGAAAATTCCAAGAGGTTTACAAAC
GAATTCGTCTTCTTTGCCAAAAGCTATCGATTCTCATCATACATCTTTGT
ATTCTGATGACACCACATCGAGCACAGGTGTTGATTTTGACAAAACCTCC
CCAAATGATGTGCCAGTATTCTGTATATCGGATGATAATACTGATACGGA
GACGAGAAATGTACAAAACGTAGACCAAGAGTCTAAGTCTTTGGTAACGG
AACAGACTTCTTCCTTGCCGTTGACAAACAAACACGACAATCAAAGGGGG
AACGTGAGTTATCAATCGTACCAAAACACCAAGGAACATATTTCTGCAGG
ACTTACTTCCAGTATTTCTATTGGTCAAGCTGATAGTGAAAGGAATCTTT
TACCGTGCAATAACGTACCGACAACTTCTTCAGACTTTCCAAAAATGAGC
AGAAAGCATCTTACTGAAAATACTCCTTGCTTTTCAGACGAACCTAATTC
TAATCCCATTCATCAACAAAACCTTTCAGCTATTAATCGCTTACCGGCTA
GGTCCGGTGCTTCAAATACAGAGCATTCAACGGCTTCGACAACATTTGAT
GACATGGATCCTGCTTATTCAGATTCGAATAATCCTAACAACCTCCCATC
AACATCAACACCAGCAATTACTGGATCTTCTTCATCAATATCATCAGAAA
ATAATAATGAGATAACCAATGAGAAATTCAAAAGCGATAATCTGCCACAA
AAATATTCCacaacaaagaaacaaaagaagaacTCGCATCcaagaagaaa
acgaaaacgaaCAGAGCTTGAATATACAAGAACGAAACGTGCTTCAGCAC
AAATTTCAAATACTGCAGAAACTAAAAATCCACTCGCTTCTGAGTTAGTT
AAAAGTTTAGAAAGCAATGAGATTTTGTACTATTGTCAAATGAATAACTT
CAGGTGTAAATGTAGTAGTTGGAAACGGTATGCAGATTTAGAGGACGAGA
TATCAGAAAGACGAATATCTCAACCGTCATATGGTGAGAATAATTGCATA
AGCACTGACAACAATAACACCAGCATCGATGCTCCGATAGGTCAAACCGA
AAAATCATCACCTACAGTATGCGTACCACAAAATATTGAAACTTCAGGAT
CGCCAAATGATGTTGACCAAACTCCTCAACATAAAATACCTACACAAGAA
CATCATACCACAGATTCTGATGTTAAATTCTCTCTTATCAAGGAAGTTGA
AAAACAACCTTGCATTTGGAATCCAAAACATACACATTACAAAGACAGGA
AAAAGACGAAAGAGGCATGGGAAGAGATCAGAAAGATTGTAAAAACACCT
GATAATgTCAGTTTAAAGGACATATGGAAAACCCTTCGCGAGGATTTTAA
AAGAAGCCATGAAAGACgaaacaagaaaaaagaagCCAGTTGCAACTTTt
acaaagaattgaaattcttAACAGATGTCGTGATTAAAAACCCGAATCCC
GCTGGAGAGTCAACATTGACAGCCAATAAAAATGTAATCTGTGGTGAGAA
AATTCCAAGAGGTTTACAAACGAATTCGTCTTCTTTGCCAAAAGCTATCG
ATTCTCATCATACATCTTTGTATTCTGATGACACCACATCGAGCACAGGT
GTTGATTTTGACAAAACCTCCCCAAATGATGTGCCAGTATTCTGTATATC
GGATGATAATACTGATACGGAGACGAGAAATGTACAAAACGTAGACCAAG
AGTCTAAGTCTTTGGTAACGGAACAGACTTCTTCCTTGCCGTTGACAAAC
AAACACGACAATCAAAGGGGGAACGTGAGTTATCAATCGTACCAAAACAC
CAAGGAACATATTTCTGCAGGACTTACTTCCAGTATTTCTATTGGTCAAG
CTGATAGTGAAAGGAATCTTTTACCGTGCAATAACGTACCGACAACTTCT
TCAGACTTTCCAAAAATGAGCAGAAAGCATCTTACTGAAAATACTCCTTG
CTTTTCAGACGAACCTAATTCTAATCCCATTCATCAACAAAACCTTTCAG
CTATTAATCGCTTACCGGCTAGGTCCGGTGCTTCAAATACAGAGCATTCA
ACGGCTTCGACAACATTTGATGACATGGATCCTGCTTATTCAGATTCGAA
TAATCCTAACAACCTCCCATCAACATCAACACCAGCAATTACTGGATCTT
CTTCATCAATATCATCAGAAAATAATAATGAGATAACCAATGAGAAATTC
AAAAGCGATAATCTGCCACAAAAATATTCCacaacaaagaaacaaaagaa
gaacTCGCATCcaagaagaaaacgaaaacgaaCAGAGCTTGAATATACAA
GAACGAAACGTGCTTCAGCACAAATTTCAAATACTGCAGAAACTAAAAAT
CCACTCGCTTCTGAGTTAGTTAAAAGTTTAGAAAGCAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019979-exon-sc0000345-1491911889:267783..268220 | TCONS_00019979-exon-sc0000345-1491911889:267783..268220 | Clytia hemisphaerica | exon |
| TCONS_00019979-exon-sc0000345-1510915933:267783..268220 | TCONS_00019979-exon-sc0000345-1510915933:267783..268220 | Clytia hemisphaerica | exon |
| TCONS_00019979-exon-sc0000345-1575043694:267783..268220 | TCONS_00019979-exon-sc0000345-1575043694:267783..268220 | Clytia hemisphaerica | exon |
| TCONS_00019979-exon-sc0000345-1491911889:268601..269687 | TCONS_00019979-exon-sc0000345-1491911889:268601..269687 | Clytia hemisphaerica | exon |
| TCONS_00019979-exon-sc0000345-1510915933:268601..269687 | TCONS_00019979-exon-sc0000345-1510915933:268601..269687 | Clytia hemisphaerica | exon |
| TCONS_00019979-exon-sc0000345-1575043694:268601..269687 | TCONS_00019979-exon-sc0000345-1575043694:268601..269687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:267783..269687 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR006578 | MADF-dom |
Blast
The following BLAST results are available for this feature:
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