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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019977 ID=TCONS_00019977|Name=TCONS_00019977|organism=Clytia hemisphaerica|type=transcript|length=1643bp
TAAAAAAAGTTCTCTTCTGAAAAATGCATTTTATTTATACAAACCCATAT
TGTGAAGCTAAACATTATGGTCAAACAATCttttaatttatgcaataaat
TAACGGAAACAATAAACCTTTTAAACAAGAACCAATCATCGATTGCTATT
CAACCGTATTTAATTGTCTATAAACCAGCCAATCAGAGTAAACCTTTCCC
ACAAGCTTTTCGGCTTATTAATTGCTGTGTTGTTAAAAAACTTAACAACC
TGCACGCGCCGTTTAaaaatgaaccaatcagaagGAAGCATTCACACGCT
TCCCATGAAACGTAAAACTATCGCTTCCaacttttgacgtttttgtgACA
ACTCTGGAAATTCTTTCCCACGGTAGAACAATAGGCTGATTCAATATAAG
GCACGCGCGATGGGGTGAATAGCTCAACATATAAAACCATCAATTTACTT
TTTGATGTGCAATTGATATAATCACTCAGTCGCGTACAGCCACCACAGTG
TACTTACCGTACCATCGCAAATTTTCACggaatattttcataaatttatt
tttcatttttttcgaaCGTCGAATTTTTCTTACCGAAGATGACAGCTATG
ATGCACCCACTGAAAGAAAAGAGAAGGGCTAACAAACCATTATTGGAACG
CAAACGCCGTGCCCGTATCAATGACAGTTTGACGGACCTGAAACACATCG
TCCTCTCCTCACTCAACAAAGATGTTTCAAAATATACGAAGATGGAGAAA
GTGGATATTCTAGACATGACCGTTCGCTTTCTGAAAGGAAGACATCATCT
TGATCACCGTCAAGACAGCACCACAGCTTACCGTACCGGTTATCAAGAAA
GTACCAAGAATGTTTATCAATCAATCATGACCATGGAAGGTATTGATCAC
AACATCAAATGTCGCATCCTTTCCAACCTCGCAAATTCGCAACGTCAAGA
TATTAAACACTCCCCACCACCAAGTCCTACCATTTCTGAAGGTTCCATAC
CACCCAGCCCACCCTTAACGCTATACAACCCGCCCTCCAGTCATCATTAT
TCAACGCCAAGCCCACCCATGAACACACGTCTTATTCACCCATCAATGGC
GCCCACTTTACCGCCACTCATCAGAAAACCCGCCCAACAACCAAATATGC
AAGAACTTCCGCCCTCAACACAGAACATGGAGAAAACAGCCGTCTGGCGG
CCGTGGTAAATTGTTTATGACATATTCtctaataatttatttttgaagaa
tttttgtttttgtgagcTTGGGGAGACGTAAATGTAAGACATTTCTATCA
TGATATATCATGGATCTGAACctgaacattttttaaatttgttgcgagtt
tatttttgcctgtcaactgatttttataaaaaagcccTTGAGAAAAAGTC
CTTCCCCAagtatttgataattttttatctcaTTTATACATAGTTTGTAT
ATAGATGTTTGTAATATAGATGAAGAAAATAGAGATTATGAAAAAAcgtt
ttatatattatatatattttgcaATTCTTTTGTACAGGATCCTTGTGTAT
ATTATTgatatattattatattatatattttttgacttgttACATAGTTT
ACATTTTTCAGTTATGTTATTATGTTTTACTGATGAAcgagtg Run BLAST on NCBI protein sequence of TCONS_00019977-protein >TCONS_00019977-protein ID=TCONS_00019977-protein|Name=TCONS_00019977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MTAMMHPLKEKRRANKPLLERKRRARINDSLTDLKHIVLSSLNKDVSKYT
KMEKVDILDMTVRFLKGRHHLDHRQDSTTAYRTGYQESTKNVYQSIMTME
GIDHNIKCRILSNLANSQRQDIKHSPPPSPTISEGSIPPSPPLTLYNPPS
SHHYSTPSPPMNTRLIHPSMAPTLPPLIRKPAQQPNMQELPPSTQNMEKT
AVWRPW Run BLAST on NCBI transcript from alignment at sc0000345:231104..235287+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019977 ID=TCONS_00019977|Name=TCONS_00019977|organism=Clytia hemisphaerica|type=transcript|length=4184bp|location=Sequence derived from alignment at sc0000345:231104..235287+ (Clytia hemisphaerica)
TAAAAAAAGTTCTCTTCTGAAAAATGCATTTTATTTATACAAACCCATAT
TGTGAAGCTAAACATTATGGTCAAACAATCttttaatttatgcaataaat
TAACGGAAACAATAAACCTTTTAAACAAGAACCAATCATCGATTGCTATT
CAACCGTATTTAATTGTCTATAAACCAGCCAATCAGAGTAAACCTTTCCC
ACAAGCTTTTCGGCTTATTAATTGCTGTGTTGTTAAAAAACTTAACAACC
TGCACGCGCCGTTTAaaaatgaaccaatcagaagGAAGCATTCACACGCT
TCCCATGAAACGTAAAACTATCGCTTCCaacttttgacgtttttgtgACA
ACTCTGGAAATTCTTTCCCACGGTAGAACAATAGGCTGATTCAATATAAG
GCACGCGCGATGGGGTGAATAGCTCAACATATAAAACCATCAATTTACTT
TTTGATGTGCAATTGATATAATCACTCAGTCGCGTACAGCCACCACAGTG
TACTTACCGTACCATCGCAAATTTTCACggaatattttcataaatttatt
tttcatttttttcgaaCGTCGAATTTTTCTTACCGAAGATGACAGCTATG
ATGCACCCACTGAAAGAAAAGAGAAGGGTAAGaacgaactttttttcgcg
TAAATTTTTGCGATAATTAATTTTGTTAGTACTGTattattttgtgaatt
ttttacttggaatttttcacttttcatggAATATCACAATAAATGAAATA
AGGGATTATATGCCCTTTATGctataaaaaataatattttactaTGTACT
GTAGTCTTCTTTACGACGATGCTCCAAAACCTAATTTGCAATTATAAAAA
AGTCTAATAATTATGAACCAAATCgttatatcttttttttctcttgcACA
CAGGCTAACAAACCATTATTGGAACGCAAACGCCGTGCCCGTATCAATGA
CAGTTTGACGGACCTGAAACACATCGTCCTCTCCTCACTCAACAAAGATG
TTTCAAAATATACGAAGATGGAGAAAGTGGATATTCTAGACATGACCGTT
CGCTTTCTGAAAGGAAGACATCATCTTGATCACCGTCAAGGTAATTGATT
TATTACAATCTTTCCAAATACGCAATTCGTATTATTTTAAGGTCTTGTTT
GAGGCGAAGGCAAAGGTCTTTCGTTTTCCAAGCTGCTACAAactgacacc
cctgtctctttacTTATTTAGCGGTTATGCTTGAATCTCATAATGAGACA
GGGGTCAGCTCTTTCTGCAAACTTAAGTTTGATGGAGAGCTGAAAGCATT
ATACTGTGTGCATTGTCAGATTTCCAACTTATCCTCAAACTGCGAGACAG
GGAGACCGGGTTACTCTTTTGAGATTTAAAGGACTAGAGCTGATTTCTGT
TTTCCGCAAGTAAGTGGCAAGATGATGAATAcatataaattattttcaat
cattTATCTCAATTATTTTGGTGACTACATAAAAAGTGTTTTATTgagct
caaaatatttttttttatgtacCTCCTACCAGTATATCAAAAAAACGTTT
GACTTGACATTTTGACAATAGATGGAGGGTGTATTCATTAAAAATGCCTT
CAAATGCCTTGTATACCGTTAGAGACAGGGTGCTATTCTATctccttttg
ttttgatagattAATAAGCCATAATGAATGATTAATACCATCACTTCAAA
TAGAATTTAGATCAAAAAATAGTTTAGAAAAAATAGATGATCATTCAAAA
GAACAGCATGATGAATTAAtaagattaaaaactttttttcccaTGGGTCT
GCACTCGCTTAGCAGGCGAAAGAATTTCTCAATatgcaaaataaaataaa
aataaacttttttcaaaatttttgatcctGTGATGCAAGTCATAACaagg
tgtattttacagaacaacGGGGGAGAACGTGTTTAACCTCACTATTGACT
ATATTTGGGCATTATAAACACTCCGTCCTGAAGTGTTCTCAAGGGCCATG
AGAAAATCTTAATTCGCAATTATACGTTAAAAGAACTTTAAGATGTGTGA
CTCTAGTAAATcgctttaaaaacttttttttataagaagatcgttctttt
ttaagaaaaattccCACGTATAATTAATAGGAGCACTTAAATTCTAAATT
aaagccccgggggggggggtactagggttggtgaatgaggggTATGTGCG
GACGGGACCTCcgaaaaccgacccttagagagaccaaattttagtgaaaa
agtgacccttagagagactttttcgaaaaattttccctaattttcaaaaa
tatcctacccttagtgagacttttttgtaattttttctctcaaaatcaaa
atttttttctaaaaatcgtgatttttcccatccttagagagactactttg
aaatttcctgatttttgtaacccttagagagactttgaaaggtgaaaaac
ccgacccttccCGTCCGCCCATACCCagtacctatttttgcctaagaacc
ccccccccccgggattaaaGCACAGATAGATTTTCTCATATATTAAAAGT
AAAAATCCTTGCCTTGAATATTTTGCAGTcagcttttttctttcttataa
aaaaggtcaTAATGCTAACTTAAGTCCAATGAATGAGGTCGAAATGCATG
AGAAGAAATGCATGGGAAAATTTGATCAAGCAAtcaagaaatgaaaacaa
aacgGTTACATGTTTGTGTAATGATCAACATATTTTAGCGCGTGCGCAAA
GCGAAGATCGAATTTCAATTTCCTTAACAAGTCAACTTGTCACTTTGCCA
TCTTTCATAAGAACATATTTAATGTCAGATTTAAACAGCAGAATGTTCGg
ataatgttcttaactttgtaaaggttcttataaaacagTGACAACAAATA
TAGCAATAGAGAAGCCAAACATAGAGTTTATACCATGAGAAGAAAATGGT
AACTtgagatttatttattttgtcaaGAGGCCGCCTCTCTTGACCGGCGA
ACGTTATCTTCAGTCTTTTTTCTCATCACATAAAGATTAATATGATGATG
TAATCATCTATTTATAAATCCATCAACACTTCTAAAAAGCAATCGAAATT
ATCAGACACCATCCTGGTCTCCAAATTtctaaattgaaactttctcaACA
TTTGTATAGAATTAaaactttaaccaaaatttaaaaaaatcaacctAAAA
TCAACCCCGGATATCCAACCAAAAACTTTCCCTGTCTCGCTGTCTCAAAG
TCAGGTTTCGTCGTTTCTAAGACTCCCTAGACATTGACTGTTAAGTATAC
AGACATTGAGAAGACTTTGAAAATAACCCTTCTTTACTTTTCTCGTTCTT
TTCAGACAGCACCACAGCTTACCGTACCGGTTATCAAGAAAGTACCAAGA
ATGTTTATCAATCAATCATGACCATGGAAGGTATTGATCACAACATCAAA
TGTCGCATCCTTTCCAACCTCGCAAATTCGCAACGTCAAGATATTAAACA
CTCCCCACCACCAAGTCCTACCATTTCTGAAGGTTCCATACCACCCAGCC
CACCCTTAACGCTATACAACCCGCCCTCCAGTCATCATTATTCAACGCCA
AGCCCACCCATGAACACACGTCTTATTCACCCATCAATGGCGCCCACTTT
ACCGCCACTCATCAGAAAACCCGCCCAACAACCAAATATGCAAGAACTTC
CGCCCTCAACACAGAACATGGAGAAAACAGCCGTCTGGCGGCCGTGGTAA
ATTGTTTATGACATATTCtctaataatttatttttgaagaatttttgttt
ttgtgagcTTGGGGAGACGTAAATGTAAGACATTTCTATCATGATATATC
ATGGATCTGAACctgaacattttttaaatttgttgcgagtttatttttgc
ctgtcaactgatttttataaaaaagcccTTGAGAAAAAGTCCTTCCCCAa
gtatttgataattttttatctcaTTTATACATAGTTTGTATATAGATGTT
TGTAATATAGATGAAGAAAATAGAGATTATGAAAAAAcgttttatatatt
atatatattttgcaATTCTTTTGTACAGGATCCTTGTGTATATTATTgat
atattattatattatatattttttgacttgttACATAGTTTACATTTTTC
AGTTATGTTATTATGTTTTACTGATGAAcgagtg Coding sequence (CDS) from alignment at sc0000345:231104..235287+ >TCONS_00019977 ID=TCONS_00019977|Name=TCONS_00019977|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at sc0000345:231104..235287+ (Clytia hemisphaerica)
ATGACAGCTATGATGCACCCACTGAAAGAAAAGAGAAGGGCTAACAAACC
ATTATTGGAACGCAAACGCCGTGCCCGTATCAATGACAGTTTGACGGACC
TGAAACACATCGTCCTCTCCTCACTCAACAAAGATGTTTCAAAATATACG
AAGATGGAGAAAGTGGATATTCTAGACATGACCGTTCGCTTTCTGAAAGG
AAGACATCATCTTGATCACCGTCAAGACAGCACCACAGCTTACCGTACCG
GTTATCAAGAAAGTACCAAGAATGTTTATCAATCAATCATGACCATGGAA
GGTATTGATCACAACATCAAATGTCGCATCCTTTCCAACCTCGCAAATTC
GCAACGTCAAGATATTAAACACTCCCCACCACCAAGTCCTACCATTTCTG
AAGGTTCCATACCACCCAGCCCACCCTTAACGCTATACAACCCGCCCTCC
AGTCATCATTATTCAACGCCAAGCCCACCCATGAACACACGTCTTATTCA
CCCATCAATGGCGCCCACTTTACCGCCACTCATCAGAAAACCCGCCCAAC
AACCAAATATGCAAGAACTTCCGCCCTCAACACAGAACATGGAGAAAACA
GCCGTCTGGCGGCCGTGGTAAATGACAGCTATGATGCACCCACTGAAAGA
AAAGAGAAGGGCTAACAAACCATTATTGGAACGCAAACGCCGTGCCCGTA
TCAATGACAGTTTGACGGACCTGAAACACATCGTCCTCTCCTCACTCAAC
AAAGATGTTTCAAAATATACGAAGATGGAGAAAGTGGATATTCTAGACAT
GACCGTTCGCTTTCTGAAAGGAAGACATCATCTTGATCACCGTCAAGACA
GCACCACAGCTTACCGTACCGGTTATCAAGAAAGTACCAAGAATGTTTAT
CAATCAATCATGACCATGGAAGGTATTGATCACAACATCAAATGTCGCAT
CCTTTCCAACCTCGCAAATTCGCAACGTCAAGATATTAAACACTCCCCAC
CACCAAGTCCTACCATTTCTGAAGGTTCCATACCACCCAGCCCACCCTTA
ACGCTATACAACCCGCCCTCCAGTCATCATTATTCAACGCCAAGCCCACC
CATGAACACACGTCTTATTCACCCATCAATGGCGCCCACTTTACCGCCAC
TCATCAGAAAACCCGCCCAACAACCAAATATGCAAGAACTTCCGCCCTCA
ACACAGAACATGGAGAAAACAGCCGTCTGGCGGCCGTGGTAAATGACAGC
TATGATGCACCCACTGAAAGAAAAGAGAAGGGCTAACAAACCATTATTGG
AACGCAAACGCCGTGCCCGTATCAATGACAGTTTGACGGACCTGAAACAC
ATCGTCCTCTCCTCACTCAACAAAGATGTTTCAAAATATACGAAGATGGA
GAAAGTGGATATTCTAGACATGACCGTTCGCTTTCTGAAAGGAAGACATC
ATCTTGATCACCGTCAAGACAGCACCACAGCTTACCGTACCGGTTATCAA
GAAAGTACCAAGAATGTTTATCAATCAATCATGACCATGGAAGGTATTGA
TCACAACATCAAATGTCGCATCCTTTCCAACCTCGCAAATTCGCAACGTC
AAGATATTAAACACTCCCCACCACCAAGTCCTACCATTTCTGAAGGTTCC
ATACCACCCAGCCCACCCTTAACGCTATACAACCCGCCCTCCAGTCATCA
TTATTCAACGCCAAGCCCACCCATGAACACACGTCTTATTCACCCATCAA
TGGCGCCCACTTTACCGCCACTCATCAGAAAACCCGCCCAACAACCAAAT
ATGCAAGAACTTCCGCCCTCAACACAGAACATGGAGAAAACAGCCGTCTG
GCGGCCGTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019977-exon-sc0000345-1491911889:231104..231730 | TCONS_00019977-exon-sc0000345-1491911889:231104..231730 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1510915933:231104..231730 | TCONS_00019977-exon-sc0000345-1510915933:231104..231730 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1575043694:231104..231730 | TCONS_00019977-exon-sc0000345-1575043694:231104..231730 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1491911889:232007..232193 | TCONS_00019977-exon-sc0000345-1491911889:232007..232193 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1510915933:232007..232193 | TCONS_00019977-exon-sc0000345-1510915933:232007..232193 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1575043694:232007..232193 | TCONS_00019977-exon-sc0000345-1575043694:232007..232193 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1491911889:234459..235287 | TCONS_00019977-exon-sc0000345-1491911889:234459..235287 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1510915933:234459..235287 | TCONS_00019977-exon-sc0000345-1510915933:234459..235287 | Clytia hemisphaerica | exon |
| TCONS_00019977-exon-sc0000345-1575043694:234459..235287 | TCONS_00019977-exon-sc0000345-1575043694:234459..235287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:231104..235287 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
BLAST of TCONS_00019977 vs. Swiss-Prot (Human)
Match: HES1 (Transcription factor HES-1 OS=Homo sapiens GN=HES1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.804e-20 Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 1
Query: 616 EKRRANKPLLERKRRARINDSLTDLKHIVLSSLNKDVSKYTKMEKVDILDMTVRFLKGRHHLDHRQDSTT------AYRTGYQESTKNVYQSIMTMEGIDHNIKCRILSNLANSQRQ 948
E R+++KP++E++RRARIN+SL+ LK ++L +L KD S+++K+EK DIL+MTV+ L+ +T YR G+ E V + + T EG++ ++ R+L +LAN Q
Sbjct: 33 EHRKSSKPIMEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQ 149
The following BLAST results are available for this feature:
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