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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019969 ID=TCONS_00019969|Name=TCONS_00019969|organism=Clytia hemisphaerica|type=transcript|length=7216bpRun BLAST on NCBI protein sequence of TCONS_00019969-protein >TCONS_00019969-protein ID=TCONS_00019969-protein|Name=TCONS_00019969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MDSDDDFMYDEDELSDPEDDQDDFDISCDVEAAGETSSSSFKYNKDEDDFRun BLAST on NCBI transcript from alignment at sc0000345:466..28177+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019969 ID=TCONS_00019969|Name=TCONS_00019969|organism=Clytia hemisphaerica|type=transcript|length=27712bp|location=Sequence derived from alignment at sc0000345:466..28177+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000345:466..28177+ >TCONS_00019969 ID=TCONS_00019969|Name=TCONS_00019969|organism=Clytia hemisphaerica|type=CDS|length=23400bp|location=Sequence derived from alignment at sc0000345:466..28177+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019969 vs. Swiss-Prot (Human)
Match: ARI1 (E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2) HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0 Identity = 312/475 (65.68%), Postives = 364/475 (76.63%), Query Frame = 2
Query: 164 EDDFSYVCLTPESIVVTMNQCIEEVNSVFQIPHSTARILLTHFKWDKEKLLERYYTTDQEKLFAEAHVINPH---RNRPMTTRSKTAAAIVGSSKNIFPECGICLSEVQLDILTGLQCGHKFCQFCWNEYLISKILHENTGQDIFCPASQCDILVDENFVIKILQDSSVRSRYHKLIADSFVQSNHLMKWCPAPDCSNAIKACYNDAKPVECLCGYTFCFSCGHQSHDPVKCFWLKKWMKKCDDDSETSNWISANTKECPKCHVTIEKNGGCNHMICRNTACKGDFCWVCLGPWQSHGSSWYNCNRYDEKDAQQARDAQTKSRAALERYLFYCNRYMNHLQSAKFEQKLYNQVKEKMDTMQEMNMSWIEVQFLKKAVDILCLCRNTLKFTYVFAFYLKKNNHSIIFEDNQSDLEMATEHLSEFLERDLNSNGLAGVQEIKQKVQDKYRYCEQRRNVLLEHVHEGYEKDFWEYQED 1579
E+D+ Y LT E I+ M +CI EVN V Q P + RILL+HF WDKEKL+ERY+ + EKLFAE HVINP R R M TRS S P C IC TGL+CGHKFC CW+EYL +KI+ E GQ I CPA CDILVD+N V++++ DS V+ +Y LI +SFV+ N L+KWCPAPDC + +K Y DAKPV C CG FCF+CG HDPVKC WLKKW+KKCDDDSETSNWI+ANTKECPKCHVTIEK+GGCNHM+CRN CK +FCWVCLGPW+ HGS+WYNCNRY+E DA+ ARDAQ +SRAAL+RYLFYCNRYMNH+QS +FE KLY QVK+KM+ MQ+ NMSWIEVQFLKKAVD+LC CR TL +TYVFAFYLKKNN SIIFE+NQ+DLE ATE LS +LERD++ + L Q+IKQKVQDKYRYCE RR VLL+HVHEGYEKD WEY ED
Sbjct: 96 EEDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLEKLFAECHVINPSKKSRTRQMNTRS---------SAQDMP-CQICYLNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKMEEMQQHNMSWIEVQFLKKAVDVLCQCRATLMYTYVFAFYLKKNNQSIIFENNQADLENATEVLSGYLERDISQDSL---QDIKQKVQDKYRYCESRRRVLLQHVHEGYEKDLWEYIED 557 The following BLAST results are available for this feature:
BLAST of TCONS_00019969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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