TCONS_00019945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019945
Unique NameTCONS_00019945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019945 ID=TCONS_00019945|Name=TCONS_00019945|organism=Clytia hemisphaerica|type=transcript|length=2305bp
NGACGACCCCGAATCTGAAATCATCGAAAAGAAGAAATCAGACGGTACCA
TCATCCGCGTGCGTCGTCGCGCGGTCAATGTGCACGTCCGCAAGCCCGCT
CATACGCGCGTCACTATTTCGAGTCACCCTGTACGAAGACCCTCAAATGA
AGACGCTGATTTGAGTTATGAAGAAATCCCTGTCGATGAGAATAGCCCTG
TGCATTTTGATAAGAATATCTGGGAAGAATACGACAAAGTGATGCCCGAC
GGAACCACGAAGAAATACCGACGTCGTTACATTTCTAAGTGCAACGTAAT
CTTGAAGAAACCATCGTTCCGCGCTGAACCGACTCCAGTTGAAACGTCTT
CCAATTTGTCCAGTGACGTCAAATATGAAGAGGTGGAAATCGGACCTGAC
GACGAACAAGACTTCAACAAGGACGACTGGGAAGTGATCGAGAAAGAACA
ACCAGACGGCACAAAGAAGCGTTTCCGTCGTCGCGTCATCACAACTACCG
TTATGACGACGTATACTACTACGCGTTACGTCATCAATGCCGACGGAGAG
GAAGATAACATGATGGAGAGCAAACCCATCGAAACGACTACCCTGACGTT
TGTGGATGGCAAACCTGTCGCCACAATGAATCGAACGAAGAGCGACGCCA
GCAACGAACAAAGAGATTATCGACCTCATTCGCAAGCCGGTGATTCTGAG
ATCATTTATACGGTCACTGATGTCTCAATGGTGGAGCAAGGTGCTGGTGG
ATTCGTCAAAGCCGTCAAAGCGAAACACGAAAATTTGGCTCACGAAGAAC
AATCACCGCCAACGACACCAAAAGGACATGTGCCGACGCGCACCATTTCT
TTCGATGAGAACGATACTGCAAATGTCATCAAAACAACCGAGCCTCCCTC
GGTACCGGTAGAAGTGACCACCATCATTCCTGCGGAATCCGAACTCCCAA
TCGAAGATGTCATCTTTGAAACGAACCAACCTCAAGAAGAATCCTTCCCT
GATATGGAGGAGAACATCGAAGCAATGGAAGTTCCCGAAGTCGAAACCGA
AGTCATCCTCATCAAACAAGTTTCCAACGAAGATGTCCGTGTCGCACCAC
CGAACAGCGAGCCGGGAGTTGTTCGCACACGACCCTTCAGTTTACCGCGA
CAGGACACTCAAGTCATCAAGACGGAGATTATCGAGGTGGATCTGACGCC
ATCTCAGATGGAGAGCTTCACAGAAGACGAAGGAGACTTTGTTGTGAACA
CAGAACAACTACCAACGGAAGTCATTACCAAAACAATCACCATCGAAGGT
GACTCCACCGAATTCACGCAAGAAGAAATCCAGAAATTGTTGAGCCAGGC
TCCTGAACAAGTCGGCGACATCGGAAGCATCACCTCCACACAAGTCGTCC
GAGTAAGATTAACAAATCTCCTGCTCTAGAGATAGAcaaattgtttttca
aagttttatttgattattttaaaaGTTTAGTCTAACAAAAACCTACTTTT
CCTCAGCGTGAGGTATTCTACAATATTTTGTACGATTATCATTCTAATAT
GCACACACTTCCCAATCCCCCGTTTGCACACATACACAATTAACTATTTG
CTAACTAACCTCTCTCTCACCACACAACAGACGACCACATTTCAGAAGAC
AATCACTGGTAAAACTATCACCGTTTCTGGAGACGCTGAAGATGACGAAC
TTCAAAGGATGTTGCGTGAAGCAGTCACGTCAGAGACGAATCAGATGGTG
ACGACAGATGAGGATGGCAACGTCATCATCACAGCCATTCAAGATGAAAT
CGTAGAAGTGGATGATGACGGTGATGATACTGAAGTCTAATTTACCGAAC
GAATGAAGTTTACCGAACCATATTTTTATTGTAACTTATTTTAAcgattt
tagtttttatttactTAGGACTGAGGATTATTTTTAACTTAGAAGTATTT
gaccttttttatattttacgcTGAAATCTGTCACTGACATGGACTAGGAG
TTTTACCAAATGCCTCCCAAGTCAACCAAGTTGCACAGTCTTCTGCGTCG
GATAATTTATTTGCCACattattttatcataatttgtAACGCATAACATA
TtcacttcttttttatttaaaataaactTGCATACTTTGGAAGTTTTAAT
CGTGTTAATTCATTTCAGAAGGAACTGGTTTAAATACTAATAAATTGGgg
tcttccagaaaatgtccgtacatgggggttggaggatatagtgttcaggg
gtagtgaaaaatctataaatttgccttgtccgggagTAAACATGCTCTTT
TTGGG
Run BLAST on NCBI

transcript from alignment at sc0000339:301514..306711+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019945 ID=TCONS_00019945|Name=TCONS_00019945|organism=Clytia hemisphaerica|type=transcript|length=5198bp|location=Sequence derived from alignment at sc0000339:301514..306711+ (Clytia hemisphaerica)
NGACGACCCCGAATCTGAAATCATCGAAAAGAAGAAATCAGACGGTACCA
TCATCCGCGTGCGTCGTCGCGCGGTCAATGTGCACGTCCGCAAGCCCGCT
CATACGCGCGTCACTATTTCGAGTCACCCTGTACGAAGACCCTCAAATGA
AGACGCTGATTTGAGTTATGAAGAAATCCCTGTCGATGAGAATAGCCCTG
TGCATTTTGATAAGAATGTAAGATGTTCACCTTACCGTCTagaaaagatt
ttgctttgaaTTTCACCATGGAAATGAAAACTTTCTTTGTCAGAGCTATT
CACGCTTCTCAAGAATACTTTAATAATCTTTCTTTGCAATTTTGACCTAA
AAATATGTAGTGATTATTGTTCACTTTATAAACTAAATATGGCCTTCTTT
TAGATCTGGGAAGAATACGACAAAGTGATGCCCGACGGAACCACGAAGAA
ATACCGACGTCGTTACATTTCTAAGTGCAACGTAATCTTGAAGAAACCAT
CGTTCCGCGCTGAACCGACTCCAGTTGAAACGTCTTCCAATTTGTCCAGT
GACGTCAAATATGAAGAGGTGGAAATCGGACCTGACGACGAACAAGACTT
CAACAAGGACGTAAGTTAActcctgttttctttttctccaTCAGTGATCT
TCCAATCTGTATTTTCTTCAGTCTAAATTTTAGACTTCGGTAATTTATAT
GAGTAATGGAGACGAGAGttgaaattgtaaatttttaccATAGGACTGGG
AAGTGATCGAGAAAGAACAACCAGACGGCACAAAGAAGCGTTTCCGTCGT
CGCGTCATCACAACTACCGTTATGACGACGTATACTACTACGCGTTACGT
CATCAATGCCGACGGAGAGGAAGATAACATGATGGAGAGCAAACCCATCG
AAACGACTACCCTGACGTTTGTGGATGGCAAACCTGTCGCCACGTACGAT
GAACTTCCTTTATCTCCTGTTTCTCCTGCTAAGACCAGTTTctttaacaa
atattttattttttctattttcgcaCTTTCTTCTTGATAATGTAATGTTA
ATTTATTTTCTGCACTTTGATAGGAGTTCACAAGATGGATTGGATGAGTC
GTTAAGTCCAGTTGAAATGAGTATGAGTATGGACGACCTTATCAGTAAAA
TCAAGTAATTATCCATTCAttacattcattcattcattataCACAAACAT
TTCCCCATTTCGTTTTATGTTCTAACTACCACCTCTATAATGCATACACA
CCGTTATCCCTTACTAATACATACACATTATAACCCAAGTAGAATTCTTG
CCTAGTCAGTAAGACATTTGCTAATCAAACTATTTTATTGCAGTCAAATG
TCCACCAGTCTGGAACAGCCGGCCCCTGAAAAACCGGCTCCAAAGAAGAA
CGTGGTCACTATCGAGACCATCACCCCGGCAACGACATTTGTTGTCGAAA
GCGCGCCTTATGACGAGGAAGAAGCGCGAAAACGACAAGAAGAGGAACGA
TTGGAACAAGAAGGGTTGAACGCAACCATCGATTCCATTTTCACCCTTCC
AGATGATGACGAAGTTCGACCTCTCTCCTCACGTACGTCCCTTTAAGTTT
ATCAACgactaaaaaaataaacatcCGATTGGTTTGTTAGAATCATGTAT
CGCCGATAATTCATTTTGACAATACCTTGTGTTTTACTTGACGTTTAATA
ACTGCTTCTTTTGGGTTGAATTTTTGCAATAGAGATATTAATTAAATCGT
AAATATCAAATGTGTAGGTACAgatgagtctccataactcgaataagCAC
GGGTGGCACAAACTTGTTCGAGATAAGGGAGTCACgtagtaaggtttata
aggcattgttaattgAAGGTACGAAAAAGCTCGTTCGAGTTAAGAGACAT
TTAAGTttaagagactctactgtatataCAACATCTTAACACGTTTTGAT
TTTCCACCACAGGACGAAGCACGTACGACGAAGACGCTTACAACGAATCG
TTCGACCACGAACTCGAAGAATACGGCGTCGAAGCTTTCCCCGATAACAC
CACGGTATGTGgagatttttcatgttttgttagCTTCGCATCATTTCTCC
CCTTCTTATGGGCTTATACGTTGAGAACCTTTCCTTTTACCTCCACGCAC
TGCGGCTGACCTTCCAGTCAGGACTGCTTTATTTTGAACATCTCGGACCT
CTACAAATCCCCCTTAATTTTAATTTCAGGCGGAGACTGACGGCATCGAT
ATCAACCTTCCGGATCCGACCGTTCgcaaaaagaaaccaaaaacggCACC
TAAACCGCGACGTCCGGAAAGTTTCGTGAAGATGACACCGACGCCGAGAA
GTAGCGGGAGTGAGAGTGACGATCACAGGTATTTATGAAGAGAAGaagaa
agacaggagacagaCTGACTAATCTTTCATAATGTTTGTTCGCTTTTCat
gattcattcattcatttcttCGAAAAATCCATTCATTCACCATTACATTT
ATTCATTTACATTACATTTATCATATACTTCTGTTCAAATTCATTGACtc
gaaaatcaaaacataaatacCATACGATTTTTAAATGAATTATAAAGATT
TGAATGTATCTAAACATATAATTTCGTAAAATGCACTtaaaataatatct
ttcttGCACCTTCAATTTTCCTTGGAGAGAATCTTAGggatttgttattg
tttttgacGAGATTTTTGTGCGAATGTTTAGAATGAATCGAACGAAGAGC
GACGCCAGCAACGAACAAAGAGATTATCGACCTCATTCGCAAGCCGGTGA
TTCTGAGATCATTTATACGGTCACTGATGTCTCAATGGTGGAGCAAGGTG
CTGGTGGATTCGTCAAAGCCGTCAAAGGTATCTTTCTCACAAGTATTGTT
TTGATACTTGACGTTCTTCACAGAAACAGTATCTAAATAATGTATAAAAG
CGATTCAAAATAAATCGACGATATTTCATTGCTGACCTCAAGATTTCAAA
ATGGAATTTTGTTACTGAAGAAACTTGTAAACAATCTTTTTTCGTTTCAG
CGAAACACGAAAATTTGGCTCACGAAGAACAATCACCGCCAACGACACCA
AAAGGACATGTGCCGACGCGCACCATTTCTTTCGATGAGAACGATACTGC
AAATGTCATCAAAACAACCGAGCCTCCCTCGGTACCGGTAGAAGTGACCA
CCATCATTCCTGCGGAATCCGAACTCCCAATCGAAGATGTCATCTTTGAA
ACGAACCAAGTAAGCTTTCACATTTCATTCTTAGCGAACAAAATTCATTT
TCCAATATTAATATGTTATTCCTTTAAATCCGTTTATATATAGCTGTAAA
ACGAGTGTTTTTACCAACAATTATAAATGTTATGATATTTTCTCCACCTC
TTCTCATGATCAGCCTCAAGAAGAATCCTTCCCTGATATGGAGGAGAACA
TCGAAGCAATGGAAGTTCCCGAAGTCGAAACCGAAGTCATCCTCATCAAA
CAAGTTTCCAACGAAGATGTCCGTGTCGGTGAGATACTCTCCTTTCTTTT
TTTAACGTTCTGGGATTCATTAGTCATGATCAAATTCAGTTGTGCGTTAG
GTTGGTTAACTTAATCAATCTCTCCTTTACCGTTTCAGCACCACCGAACA
GCGAGCCGGGAGTTGTTCGCACACGACCCTTCAGTTTACCGCGACAGGAC
ACTCAAGTCATCAAGACGGAGATTATCGAGGTGGATCTGACGCCATCTCA
GATGGAGAGCTTCACAGAAGACGAAGGAGACTTTGTTGTGAACACAGAAC
AACTACCAACGGAAGTCATTACCAAAACAATCACCATCGAAGGTGACTCC
ACCGAATTCACGCAAGAAGAAATCCAGAAATTGTTGAGCCAGGCTCCTGA
ACAAGTCGGCGACATCGGAAGCATCACCTCCACACAAGTCGTCCGAGTAA
GATTAACAAATCTCCTGCTCTAGAGATAGAcaaattgtttttcaaagttt
tatttgattattttaaaaGTTTAGTCTAACAAAAACCTACTTTTCCTCAG
CGTGAGGTATTCTACAATATTTTGTACGATTATCATTCTAATATGCACAC
ACTTCCCAATCCCCCGTTTGCACACATACACAATTAACTATTTGCTAACT
AACCTCTCTCTCACCACACAACAGACGACCACATTTCAGAAGACAATCAC
TGGTAAAACTATCACCGTTTCTGGAGACGCTGAAGATGACGAACTTCAAA
GGGTATGTGAACTAATCACTCAATCTACTTACCAACACATGCTATTAATA
TGCACATTCAAAAGCATTCACTTTGATAATCCTTTCAGAGAGAGACTTCT
TTACACTTACCGTCCTCATTTTGAAAGTGTGGTTGCCAAGATTTTATTTG
ACATTCTATCCTGATTATCTTGCAAGTCTCCACTGCAGATTATATATTAA
GGCAGACTTAAATAGGCTTTGAAGTTTGCACTTTTCTCTTTAGGGATTAA
TTATTTGATGCCTAAATGTCGGTTGAAGGGATTAGtgtatttgaaaaaat
aggcCTATGCAAACTTCGTTTGCCTCAAACATAATCCTCTTCACGTTTTA
GATGTTGCGTGAAGCAGTCACGTCAGAGACGAATCAGATGGTGACGACAG
ATGAGGATGGCAACGTCATCATCACAGCCATTCAAGATGAAATCGTAGAA
GTGGATGATGACGGTGATGATACTGAAGTCTAATTTACCGAACGAATGAA
GTTTACCGAACCATATTTTTATTGTAACTTATTTTAAcgattttagtttt
tatttactTAGGACTGAGGATTATTTTTAACTTAGAAGTATTTgaccttt
tttatattttacgcTGAAATCTGTCACTGACATGGACTAGGAGTTTTACC
AAATGCCTCCCAAGTCAACCAAGTTGCACAGTCTTCTGCGTCGGATAATT
TATTTGCCACattattttatcataatttgtAACGCATAACATATtcactt
cttttttatttaaaataaactTGCATACTTTGGAAGTTTTAATCGTGTTA
ATTCATTTCAGAAGGAACTGGTTTAAATACTAATAAATTGGggtcttcca
gaaaatgtccgtacatgggggttggaggatatagtgttcaggggtagtga
aaaatctataaatttgccttgtccgggagTAAACATGCTCTTTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011194XLOC_011194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019945-exon-sc0000339-1491911889:301514..301730TCONS_00019945-exon-sc0000339-1491911889:301514..301730Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:301514..301730TCONS_00019945-exon-sc0000339-1510915933:301514..301730Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:301514..301730TCONS_00019945-exon-sc0000339-1575043694:301514..301730Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:301917..302123TCONS_00019945-exon-sc0000339-1491911889:301917..302123Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:301917..302123TCONS_00019945-exon-sc0000339-1510915933:301917..302123Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:301917..302123TCONS_00019945-exon-sc0000339-1575043694:301917..302123Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:302257..302456TCONS_00019945-exon-sc0000339-1491911889:302257..302456Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:302257..302456TCONS_00019945-exon-sc0000339-1510915933:302257..302456Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:302257..302456TCONS_00019945-exon-sc0000339-1575043694:302257..302456Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:304245..304390TCONS_00019945-exon-sc0000339-1491911889:304245..304390Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:304245..304390TCONS_00019945-exon-sc0000339-1510915933:304245..304390Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:304245..304390TCONS_00019945-exon-sc0000339-1575043694:304245..304390Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:304564..304772TCONS_00019945-exon-sc0000339-1491911889:304564..304772Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:304564..304772TCONS_00019945-exon-sc0000339-1510915933:304564..304772Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:304564..304772TCONS_00019945-exon-sc0000339-1575043694:304564..304772Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:304927..305041TCONS_00019945-exon-sc0000339-1491911889:304927..305041Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:304927..305041TCONS_00019945-exon-sc0000339-1510915933:304927..305041Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:304927..305041TCONS_00019945-exon-sc0000339-1575043694:304927..305041Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:305152..305765TCONS_00019945-exon-sc0000339-1491911889:305152..305765Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:305152..305765TCONS_00019945-exon-sc0000339-1510915933:305152..305765Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:305152..305765TCONS_00019945-exon-sc0000339-1575043694:305152..305765Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1491911889:306115..306711TCONS_00019945-exon-sc0000339-1491911889:306115..306711Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1510915933:306115..306711TCONS_00019945-exon-sc0000339-1510915933:306115..306711Clytia hemisphaericaexon
TCONS_00019945-exon-sc0000339-1575043694:306115..306711TCONS_00019945-exon-sc0000339-1575043694:306115..306711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:301514..306711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37775e-10	0.245939	0	0	0	1.70918e-08	0.603883	1.74114	3.6251	1.63971	0.34744	3.15021	1.73332	0.710465	1.22131	1.80148	1.25964	2.40405	2.07367	3.52217	1.58266	2.12156	0.724739	0.753937	0.12378	0.369442	1.10345	1.63379	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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