TCONS_00019940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019940
Unique NameTCONS_00019940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019940 ID=TCONS_00019940|Name=TCONS_00019940|organism=Clytia hemisphaerica|type=transcript|length=946bp
GGGAAACAGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGT
AGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATC
TCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAG
CCAATCCTGATGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAG
AATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGT
TCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAAC
CCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGAT
GATAAATATGATCCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGA
TGGTTCAAAGAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGA
AGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATAT
GAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCC
TAAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGA
AATTCCGCCGACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGT
GGAGATGAGGAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGA
AGAAGTTGAAATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAA
AAgagTGGGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGC
GTCAGACGGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGA
TCTGGTGAATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAA
ATGCTCCAACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:295963..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019940 ID=TCONS_00019940|Name=TCONS_00019940|organism=Clytia hemisphaerica|type=transcript|length=2764bp|location=Sequence derived from alignment at sc0000339:295963..298726+ (Clytia hemisphaerica)
GGGAAACAGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGT
AGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATC
TCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAG
CCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaat
ttcttttttctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCG
CATTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatttctttttttg
cttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTTATtgagaaaa
tattgaatttaagCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTT
TCACCTGCTTTCACTGCAATATGAAGTCACTCAACTTCacttactttcgt
tttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAA
GAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAA
AGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTG
GAAGTCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATG
TTTTTTTTGGGGAAAcctttcactgaaatttcaggCAATTTTACAGTTTG
CAGGTGACGAGTTCAGTATTTTTGCTGGAATTTTTTACGTctctttgttt
tataagaaacttttcaaaatcattttaaactTTCTCATTTTCCTCTAGGA
ATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAAAAAGTTCC
GCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAA
TCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGA
AGCAAATCCTGATGATGATAAATATGATCCTAAGGTATAGTTAGCACAGA
ATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGCATCTCCGAGTCA
TTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCAAAtttacatt
atttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGC
CTGATGGTTCGAANGTTGTCAATGTCTTTCACTGCAATATGAAGTCACTC
AACTTCacttactttcgttttcttcagGAATGGGAAACGGTCGAGAATAC
GATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTA
ATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATT
CAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAA
ATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttc
aggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATT
TTTTACgtctttttgttttataagaaacttttcaaaatcattttaaactT
TCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATG
GTTCAAAGAAGAAATTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAG
AAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGA
AGAAGTGGAAGTTGATGAGGCAAATCCTGATGATGATAAATTTGATCCTA
AGGTATTGTTTGCACAGAAtttctttctctctctctcacTTTAAAGCCAA
TATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCA
GATCTACTcaaatttacaatatttttcaaatatctcCTCTAGGAATGGGA
AACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGAC
GAATTATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCA
GTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAAGCAAA
TCCTGATGATGATAAATATGATCCTAAGGTATAGTTAGCACAGAATTTCT
TTCTCTCTCTCACTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGAT
GTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCAAAtttacattattttt
caaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATG
GTTCGAAGAAGAAATTCCGCCGACGAATCATTGTTCTTAATGTTGTGAAG
AAACCAAAGAGTGGAGATGAGGAGAAACCGTCAGAAGTCGACGAAGAACC
CATCGAATATGAAGAAGTTGAAATTGATGAAGCCAACCCTCAAGATGATC
AATTTGATCCAAAAGTAAATAATTGATGTGACTTTCTTCAGTTTCTCTTA
CTTCATTACCTATGCCACATTTTGACATCTTgttttttacaatttcttaa
cTTAACTTGATACATCACATTTTAGGCTTCCCAggcagtcacaacttaac
catcttttaattttttttaggagTGGGAAGTTGTGGAGAAAGAAAAACCG
AATGGCGACAAAGTACGCGTCAGACGGCGTCGTGTCGTCATTTTGAAGAT
CGTGAAGGAGCCTGAAGATCTGGTGAATGAAAATGAAGTGACTGTCGAAG
AAATGCCACTCAATGAAAATGCTCCAACACAAGAAGATGATGACAAGTTT
GACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019940-exon-sc0000339-1491911889:295963..296144TCONS_00019940-exon-sc0000339-1491911889:295963..296144Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1510915933:295963..296144TCONS_00019940-exon-sc0000339-1510915933:295963..296144Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1575043694:295963..296144TCONS_00019940-exon-sc0000339-1575043694:295963..296144Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1491911889:296422..296607TCONS_00019940-exon-sc0000339-1491911889:296422..296607Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1510915933:296422..296607TCONS_00019940-exon-sc0000339-1510915933:296422..296607Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1575043694:296422..296607TCONS_00019940-exon-sc0000339-1575043694:296422..296607Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1491911889:296761..296946TCONS_00019940-exon-sc0000339-1491911889:296761..296946Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1510915933:296761..296946TCONS_00019940-exon-sc0000339-1510915933:296761..296946Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1575043694:296761..296946TCONS_00019940-exon-sc0000339-1575043694:296761..296946Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1491911889:298179..298376TCONS_00019940-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1510915933:298179..298376TCONS_00019940-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1575043694:298179..298376TCONS_00019940-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1491911889:298533..298726TCONS_00019940-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1510915933:298533..298726TCONS_00019940-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019940-exon-sc0000339-1575043694:298533..298726TCONS_00019940-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:295963..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.81182	6.631	3.76043	7.7059	25.549	32.9455	5.09926	2.66624	24.4255	25.3812	11.4694	19.6954	8.70353	6.52046	11.5953	16.7075	23.1752	25.0809	22.2588	31.9492	23.9002	20.091	21.7555	25.9206	0	0	26.7621	29.7793	19.646	30.1864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top