TCONS_00019938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019938
Unique NameTCONS_00019938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019938 ID=TCONS_00019938|Name=TCONS_00019938|organism=Clytia hemisphaerica|type=transcript|length=951bp
gGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAAT
TCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGG
AAATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGA
TGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGAATGGGAAACAG
TCGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAATT
ATTGTTCTTAATGTTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGA
GGAAGAACCAGTTCAATATGAACAAGTGGAAGTTGATGAAGCCAATCCTG
ATGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATG
CCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGT
TGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAAT
ATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATAT
GATCCTGAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAA
GAAGAAATTCCGCCGACGAATCATTGTTCTTAATGTTGTGAAGAAACCAA
AGAGTGGAGATGAGGAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAA
TATGAAGAAGTTGAAATTGATGAAGCCAACCCTCAAGATGATCAATTTGA
TCCAAAAgagTGGGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAG
TACGCGTCAGACGGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCT
GAAGATCTGGTGAATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAA
TGAAAATGCTCCAACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAA
A
Run BLAST on NCBI

transcript from alignment at sc0000339:295094..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019938 ID=TCONS_00019938|Name=TCONS_00019938|organism=Clytia hemisphaerica|type=transcript|length=3633bp|location=Sequence derived from alignment at sc0000339:295094..298726+ (Clytia hemisphaerica)
gGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAAT
TCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGG
AAATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGA
TGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATTTTTTATTT
GGGGAAAGCctttcaatgcaattttacaGGTGACGAGTTCAGTATTTTTT
GCTGGAATTTTTTACGTCTTTTcgttttataagaaatttttcaaaatcat
tttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGA
TGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAAT
GTTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGT
TCAATATGAACAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAAT
TTGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcG
GGGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGC
ACTCTGACATgtctctatttctttttttgcttgagacgAGCTNGGGGGAA
CGATCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtcctt
tttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTT
ATAATATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAA
TGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTAC
TTTCGTCTTCTTCAGGAATGGGAAACAGTCGAGAATACGATGCCTGATGG
TTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGA
AACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAA
GAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAA
GGTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTG
GAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACAT
gtctctatttctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCG
TTCTTAGTTATtgagaaaatattgaatttaagCCCATTCGACTATGAAAT
AAAAAGTTGCCAATGTCTTTCACCTGCTTTCACTGCAATATGAAGTCACT
CAACTTCacttactttcgttttcttcagGAATGGGAAACGGTCGAGAATA
CGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTT
AATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCAT
TCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATA
AATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttcactgaaattt
caggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAAT
TTTTTACGTctctttgttttataagaaacttttcaaaatcattttaaact
TTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGAT
GGTTCAAAGAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAA
GAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATG
AAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCT
AAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAAT
ATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAG
GTCTACTCAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAA
ACAGTCGAGAAGACGATGCCTGATGGTTCGAANGTTGTCAATGTCTTTCA
CTGCAATATGAAGTCACTCAACTTCacttactttcgttttcttcagGAAT
GGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGT
AGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATC
TCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAG
CCAATCCTGATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGA
AAcctttcactgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTT
CAGTATTTTTGCTGGAATTTTTTACgtctttttgttttataagaaacttt
tcaaaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTC
GAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAACCAT
TGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGG
AAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAGGCAAATCCTGAT
GATGATAAATTTGATCCTAAGGTATTGTTTGCACAGAAtttctttctctc
tctctcacTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTT
TCAGGTCTCAAACGAGCCAGATCTACTcaaatttacaatatttttcaaat
atctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCG
AAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAAACC
AAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAG
TGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTA
TAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTG
CATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTAC
TCAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAAACAGTC
GAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCAT
TGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGT
CAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAA
GCCAACCCTCAAGATGATCAATTTGATCCAAAAGTAAATAATTGATGTGA
CTTTCTTCAGTTTCTCTTACTTCATTACCTATGCCACATTTTGACATCTT
gttttttacaatttcttaacTTAACTTGATACATCACATTTTAGGCTTCC
CAggcagtcacaacttaaccatcttttaattttttttaggagTGGGAAGT
TGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTC
GTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAA
AATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAACACA
AGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019938-exon-sc0000339-1491911889:295094..295280TCONS_00019938-exon-sc0000339-1491911889:295094..295280Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1510915933:295094..295280TCONS_00019938-exon-sc0000339-1510915933:295094..295280Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1575043694:295094..295280TCONS_00019938-exon-sc0000339-1575043694:295094..295280Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1491911889:295419..295604TCONS_00019938-exon-sc0000339-1491911889:295419..295604Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1510915933:295419..295604TCONS_00019938-exon-sc0000339-1510915933:295419..295604Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1575043694:295419..295604TCONS_00019938-exon-sc0000339-1575043694:295419..295604Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1491911889:296422..296607TCONS_00019938-exon-sc0000339-1491911889:296422..296607Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1510915933:296422..296607TCONS_00019938-exon-sc0000339-1510915933:296422..296607Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1575043694:296422..296607TCONS_00019938-exon-sc0000339-1575043694:296422..296607Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1491911889:298179..298376TCONS_00019938-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1510915933:298179..298376TCONS_00019938-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1575043694:298179..298376TCONS_00019938-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1491911889:298533..298726TCONS_00019938-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1510915933:298533..298726TCONS_00019938-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019938-exon-sc0000339-1575043694:298533..298726TCONS_00019938-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:295094..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317299	0.221011	3.01813	0	0	0	0	0	6.86176e-06	0.000193861	3.36186e-06	3.2079e-08	0	0.002676	0	0	0	0	0	0	1.77233e-07	0	0.000182606	0	2.28239	4.29049	0.00152468	7.54371e-08	0.273107	0.000767432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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