TCONS_00019920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019920
Unique NameTCONS_00019920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019920 ID=TCONS_00019920|Name=TCONS_00019920|organism=Clytia hemisphaerica|type=transcript|length=2820bp
GAAAGTCTCTTCTTTTATATATTTAGTTATaataagaaattgaaaatttg
ctcaTTCGTGGTAAAAAATGGTTTCCAATGTAGCCCAAACGGGTGAAAAT
TCATCTGCTGCTGAAACAAActcaaagaaatcaaagaaaaagtcagGTCC
TCAATATGAATGCGTCATCACATGCTTGGATGGCTCTGTGATCAACACTT
CTGTTGAGaaaTCAGCCAAAGGAGAAGAACTAGTCAATAAAGTAGCTCAA
GAACTTGATGTGAAATCGAAAGATTATGTTGGTCTCCTTTTCAATAATGG
AACAAGGcaatGGTTGGATATTCATAAAGATATGAAACATCAGTTGGGAG
atTCTAAAGCAGAATTTTTATTTCGGGTCAAATTCTATGAGCCTGAGCCC
AGCAAAATTCAAGAAGATCATTTAAGATATTTACTTTATCTCCAGATTAG
AGAAGATTTATCAGAAAAAAGattAAAATGCACAGAAGAAGTAATTGCTC
AACTTGGTGCATATACTGCACAAgcTGAAGTAGGAGACTTCAATTTATCA
GAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGAATACCGA
TATACTTGAAAGAATCAATTTATTGCACAAACAACACAGGGGTCAAACAC
CTTTACAAGCTGAACTTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGA
TATGGAGTGGACGTACATGATGCCATGGATACCAATGGGCATGTAGAGAT
TGGTATTGCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAAC
AGCTTTTCAGATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAA
TTCACCATTAAACTCAAACAACCAGTGAGCGACAATGACAATAAGAAGAA
TTACGTATATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAG
TGGCTGTTGAATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCA
CGAAAACGTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATACAgTGA
TCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCTAAAA
ATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACCTCCT
TCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAACCAAC
TAAAGTGGCACCACTTGAAGAAGAACCAGTCCACTATGAAGAAGTACCAG
TCCAATACGAAGAAGTAGAGTTCGATGAAGCCAATCCTGATGATGATAAC
TTTGATCCtgagGAATGGGAAACAGTTGAGAAGACGATGCCTGATGGTTC
GAAGAAGAAATCCCGTCGACGGGTCATCGTTCTTAATGTTGTGAAGAAAC
CAAAGAGTGGGAAATCTCCAGTTGAAGAACCAGTTCAATATTATGAAGAA
GTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGA
ATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCC
GTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAA
TCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGA
AGCCAATCCTGATGATGATAAATTTGATCCTAAGGAATGGGAAACAGTCG
AGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATC
GTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGA
ACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATG
ATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATGCCT
GATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGT
GAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATATA
ATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATGAT
CCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAA
GAAATTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAGA
GTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAA
GTTGATGAGGCAAATCCTGATGATGATAAATTTGATCCTAAGGAATGGGA
AACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGAC
GAATTATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCA
GTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAAGCAAA
TCCTGATGATGATAAATATGATCCTAAGGAATGGGAAACAGTCGAGAAGA
CGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCATTGTTCTT
AATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGTCAGAAGT
CGACGAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAAGCCAACC
CTCAAGATGATCAATTTGATCCAAAAgagTGGGAAGTTGTGGAGAAAGAA
AAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTCGTGTCGTCATTTT
GAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAAAATGAAGTGACTG
TCGAAGAAATGCCACTCAATGAAAATGCTCCAACACAAGAAGATGATGAC
AAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:287874..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019920 ID=TCONS_00019920|Name=TCONS_00019920|organism=Clytia hemisphaerica|type=transcript|length=10853bp|location=Sequence derived from alignment at sc0000339:287874..298726+ (Clytia hemisphaerica)
GAAAGTCTCTTCTTTTATATATTTAGTTATaataagaaattgaaaatttg
ctcaTTCGTGGTAAAAAATGGTTTCCAATGTAGCCCAAACGGGTGAAAAT
TCATCTGCTGCTGAAACAAActcaaagaaatcaaagaaaaagtcagGTCC
TCAATATGAATGCGTCATCACATGCTTGGATGGCTCTGTGATCAACACTT
CTGTTGAGGTTTGAAGTTTTTATTTTCCccttgaattttgatttttgtca
tCATGATCATGTATAGGCAAATGGAAAAAAAGCTATTAAATTTATCTCCA
AAGTTAGTTTCTTGATTTGATTGGGTtggaatatttattttttgtctaCA
AGAACAGGTTGGgtttaattaaattttaattCCAAATAGTGTGTTATACA
GATTGTAAGTGTATATTTAATGGTAATTGATTCGGATTAGGCtggacggc
aaaccaacaattttttaagtccagccttatTTTGACCTCTAAAAGGCCCT
TATAAAGTGCACAAAGAATTTTATCAATGATAATGTGTTTCTATAACCAA
TacaacaaagggttttttcgattttagaaaTCAGCCAAAGGAGAAGAACT
AGTCAATAAAGTAGCTCAAGAACTTGATGTGAAATCGAAAGATTATGTTG
GTCTCCTTTTCAATAATGGAACAAGGGTAagattttcagaatattttccT
ATTGTAAAAAGCTTAACATTTTcaggataatttttttcattttaccaTGC
ACAGGAGTACCTTtccagaaaattattttgataaacttattttatttttc
agcaatGGTTGGATATTCATAAAGATATGAAACATCAGTTGGGAGGTTGG
TACTTCTTCAGTtttgtttttggaattttttttagtgaaaatctttaaat
tatGCATAACTTGCCCATTTCATTTCTCTTTATGAATTATTTAGCAAGGA
AGAGGTGTTTTCAAATgtgctttttatttatttcagatTCTAAAGCAGAA
TTTTTATTTCGGGTCAAATTCTATGAGCCTGAGCCCAGCAAAATTCAAGA
AGATCATTTAAGGTTTGTTATTTGTTTTCCCCTTTCtatacaaaaatgtt
tttgtttgaccCAGCTTTATATTTTTTGCTCAAGTCTCAATATATTGACT
GAATTATTTACTCAAtgcaaattcaaattcaaaaacaaatgttttttatt
ccttttaatgattttagtgaaacaggtttttaaattttggaattcttttg
aaacccattaaatttttgtgttttcagATATTTACTTTATCTCCAGATTA
GAGAAGATTTATCAGAAAAAAGGTAAATAATGTTTATCTAGTTAACAAAT
TGTGTTGGTATAGGTTTCCATGGAGAAGTTGGATTACAGCTTATTctaat
taatgtaattaaagtATATCCTTTAATCATCAAAATTACTTGGCACTTAG
CAGCCATATTATTGATTTTAAtgacatcatttttttctttaagattAAAA
TGCACAGAAGAAGTAATTGCTCAACTTGGTGCATATACTGCACAAggtaa
atttgttttaaaacctTTGGCAATGTGTCATTATTTAATGTTTGTTTTTA
GTCAATTGCACCCTGTCAACCAAAGTTTAAAAGTCTTAACTgatattttt
caacatttaaaaaattgagattcCAATACATATATAAAAGTATTTACTTG
GGATAGTTAAGTCATGTTTATTAAAacttatttgaaatttcaattgatat
tttttcagcTGAAGTAGGAGACTTCAATTTATCAGAGCATGAGCATGATT
ACTTGAAAGATTATGAGTTTGCTGAGGTAAGTAAAGTCTATACCAACAAA
TAACATGATTCCTTAAGCTGAAATCACCCTAAAGGAACTCTTTAAtgaaa
aagtcattttcttACCATAGAATACCGATATACTTGAAAGAATCAATTTA
TTGCACAAACAACACAGGtattcattttcttcatttttgattcAGTTCCA
ACCTTCTCTTGTACTTTTTTCACTGGATAATGCAATGGATAGATGGATTT
TACTTAAACTTCGCATAAATGTCTTCATAATAATTACTCTTACTTTTTTA
TTTAGGGGTCAAACACCTTTACAAGCTGAACTTAACTTTTTGGAAATTGC
CAAAAAGATTCCTAGATATGGAGTGGACGTACATGATGCCATGGTAGGTA
TTTTAAGAACAAAATGAAGTTTAAGCAACCCAAACAACCTTTTAATGTCT
TAAATGTAAGCTTATGTTCAAATATTGAATGTTCTTTTTTTGTCTTTAGG
ATACCAATGGGCATGTAGAGATTGGTATTGCTGCTTTAGGAATAAACATC
TATCGGGATGGAAAGCGTGAACAGCTTTTCAGATGGCAAAATATGCATGA
CTTCAATTACAACCGAAGAAAATTCACCATTAAACTCAAACAACCAGTGG
TACGTATGCTTTTCCTTTAGCTGAAAGTAATTCTATTTTAATTTTGTAAA
GCGTCACAtgtttctaaaatattcagtaattttaaatgttttatttcaGA
GCGACAATGACAATAAGAAGAATTACGTATATTATTTCGAATCTGCTAAA
AGCTGCAAACAATGCTACAAAGTGGCTGTTGAATATCATTCTTTCTTCCG
ATTGACAAGACCTGATGCTCCACGAAAACGTGCTGACACCTTGAAAATGG
GATCTAGCTTCAGATACAggtataaaaaattgttttcacaaaatatttat
ttcaccACTAACTCCACTTCTATCTCAACTAAAGTGAAAACATTGTCACT
AAATCACTCAACTCAATTTTTATGTTTCTAAATTAGAAGGTTGATTTaat
gcatgttttttttataacaacatccaaaaaattttaagccttcggaatcg
gatgttcttaactttttcatttttaagcctaagaatgttcttaaaatctt
cttaatttctacattttttgagtgtttttgtgcaattttgaaagaaatcg
agtgttttagagcccatgaagccttaaaatgttgttaACTTGTTCTTACT
TAACACTTTGGTCATCGAATATGTTCTtatcttatatagtttgttcttat
taaaaaagcgtgtatgttcTTTCTTTTCAGTGATCGAACCTTGTATCAAC
TGAGATACCAAAAAGGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAA
CGAACGCCAAGCACAAGGAAGACATTACCTCCTTCTTACAAAACACCGTT
GATTGAACCTGAAGTGCCATTCATTGAACCAACTAAAGGTAGTTTATTCT
TCTTTGGAAATGTAAATTAATGCTTATTTCTGGTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTGTTTTCTTTAAGATTAAAATGCA
CAGAAGAAGTAATTGCTCAACTTGGTGCATATACTGCACAAggtaaattt
gttttaaaacctTTGGCAATGTGTCATTATTTAATGTTTGTTTTTAGTCA
ATTGCACCCTGTCAACCAAAGTTTAAAAGTCTTAACTgatatttttcaac
atttaaaaaattgagattcCAATACATATATAAAAGTATTTACTTGGGAT
AGTTAAGTCATGTTTATTAAAacttatttgaaatttcaattgatattttt
tcagcTGAAGTAGGAGACTTCAATTTATCAGAGCATGAGCATGATTACTT
GAAAGATTATGAGTTTGCTGAGGTAAGTAAAGTCTATACCAACAAATAAC
ATGATTCCTTAAGCTGAAATCACCCTAAAGGAACTCTTTAAtgaaaaagt
cattttcttACCATAGAATACCGATATACTTGAAAGAATCAATTTATTGC
ACAAACAACACAGGtattcattttcttcatttttgattcAGTTCCAACCT
TCTCTTGTACTTTTTTCACTGGATAATGCAATGGATAGATGGATTTTACT
TAAACTTCGCATAAATGTCTTCATAATAATTACTCTTACTTTTTTATTTA
GGGGTCAAACACCTTTACAAGCTGAACTTAACTTTTTGGAAATTGCCAAA
AAGATTCCTAGATATGGAGTGGACGTACATGATGCCATGGTAGGTATTTT
AAGAACAAATGAAGTTTAAGCAACCCAAACAACCTTTTAATGTCTTAAAT
GTAAGCTTATGTTCAAATATtaaatgttctttttttgtCTTTAGGATACC
AATGGGCATGTAGAGATTGGTATTGCTGCTTTAGGAATAAACATCTATCG
GGATGGAAAGCGTGAACAGCTTTTCAGATGGCAAAATATGCATGACTTCA
ATTACAACCGAAGAAAATTCACCATTAAACTCAAACAACCAGTGGTACGT
ATGCTTTTCCTTTAGCTGAAAGTAATTCTATTTTAATTTTGTAAAGCGTC
ACATGTTTCTAAAACATTCagtaattttaaatgttttatttcaGAGCGAC
AATGACAATAAGAAGAATTACGTATATTATTTCGAATCTGCTAAAAGCTG
CAAACAATGCTACAAAGTGGCTGTTGAATATCATTCTTTCTTCCGATTGA
CAAGACCTGATGCTCCACGAAAACGTGCTGACACCTTGAAAATGGGATCT
AGCTTCAGATACAggtataaaaaattgttttcacaaaatatttatttcac
cACTAACTCCACTTCTATCTCAACTAAAGTGAAAACATTGTCACTAAATC
ACTCAACTCAATTTTTATGTTTCTAAATTAGAAGGTTGATTTaatgcatg
ttttttttataacaacatccaaaaattttaagcTTTCGGAATCGgatctt
cttaactttttcagttttaagcctaagaatgttcttaaaatcttcttaat
ttctacattttttgagtgtttttgtgcaattttgaaagaaatcgagtgtt
ttagagcccatgaagccttaaaatgttgttaACTTGTTCTTACTTAACAC
TTTGGTCATCGAATATGTTCTtatcttatatagtttgttcttattaaaaa
agcgtgtatgttcTTTCTTTTCAGTGATCGAACCTTGTATCAACTGAGAT
ACCAAAAAGGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACG
CCAAGCACAAGGAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGA
ACCTGAAGTGCCATTCATTGAACCAACTAAAGGTAGTTTATTCTTCTTTG
GAAATGTAAATTAATGCTTATttctggtttttacacaaaaaattGTGGTT
GGAATATATGTCTGGAGACTGAAGActaaattttcaaatctttttccttT
AGTGGCACCACTTGAAGAAGAACCAGTCCACTATGAAGAAGTACCAGTCC
AATACGAAGAAGTAGAGTTCGATGAAGCCAATCCTGATGATGATAACTTT
GATCCtgaggtattttttattttggggAGCCTTTCGATGCTATTCTACAG
TTTACTACAGTTGAATTAGTTCAGTTTTTTTtgctggaaatttttttatc
ttttcgtTTTATGAGAAACTTGGATTCATAAGAAACTTGAAGAACTTTTT
ATTAAATCTTCAAAGTCATTGAAAACTTTATCACTTTCCTCTAGGAATGG
GAAACAGTTGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATCCCGTCG
ACGGGTCATCGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTC
CAGTTGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTCGATGAAGCC
AATCCTGATGATGATAAATTTGATCCTAAGGTATATTGTTAGCACAGAAT
TTCCTTTTCCGAAATCTTCAGTGTGACCTGAAGATCTGGAAAACGAtaag
attttgctgaaattttgcctACTCTGACatgtcttttttttcctttNCGG
ATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtcctttttttgc
ttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATAT
ACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTT
CATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTC
TTCTTCAGGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAG
AAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAA
GAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGG
AAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCG
TTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAGATTG
GGGGAACGATCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTA
TtcctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAT
CAATTTATAATATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGT
TGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTC
ACTTACTTTCGTCTTCTTCAGGAATGGGAAACGGTCGAGAATACGATGCC
TGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTG
TGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATAT
TATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGA
TCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGT
GACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTC
TGACATgtctctatttctttttttgcttgagacgAGCTTTGTACGATAGC
TTCGCGTTCTTAGTTATtgagaaaatattgaatttaagCCCATTCGACTA
TGAAATAAGTTGTCAATGTCTTTCACTGCAATATGAAGTCACTCAACTTC
acttactttcgttttcttcagGAATGGGAAACGGTCGAGAATACGATGCC
TGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTG
TGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCAGTTCAATAT
AATGAAGAAGTAGAGTTCGATGAAGCCAATCCTGATGATGATAAATATGA
TCCTGAGGTATTTTTTATTTGGGGAAAGCctttcaatgcaattttacaGG
TGACGAGTTCAGTATTTTTTGCTGGAATTTTTTACGTCTTTTcgttttat
aagaaatttttcaaaatcattttaaactTTCTCATTTTCCTCTAGGAATG
GGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCC
GACGAATTATTGTTCTTAATGTTGTGAAGAAACAAAAGAGTGGGAAATCT
CCAGTCGAGGAAGAACCAGTTCAATATGAACAAGTGGAAGTTGATGAAGC
CAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatt
tcttttttctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGC
ATTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatttctttttttgc
ttgagacgAGCTNGGGGGAACGATCGGATTTGGCTTATATTTTGCGCACT
CTGACATGTCTCTATtcctttttttgcttgagacgAGCTTTGTACGATAG
CTTCGCGTTCTTATCAATTTATAATATACTAAATTTAAGCCCATTCGACT
ATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGA
ACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACAGTC
GAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATAT
CGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAG
AACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGAT
GATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttct
aaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGA
AGTTTTGCGCACTCTGACATgtctctatttctttttttgcttgagacgAG
CTTTGTACGATAGCTTCGCGTTCTTAGTTATtgagaaaatattgaattta
agCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCACCTGCTTT
CACTGCAATATGAAGTCACTCAACTTCacttactttcgttttcttcagGA
ATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCC
GTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAA
TCTCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGA
AGCCAATCCTGATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGG
GAAAcctttcactgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAG
TTCAGTATTTTTGCTGGAATTTTTTACGTctctttgttttataagaaact
tttcaaaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAG
TCGAGAAGAAGATGCCTGATGGTTCAAAGAAAAAGTTCCGCCGACGAACC
ATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGA
GGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAAGCAAATCCTG
ATGATGATAAATATGATCCTAAGGTATAGTTAGCACAGAATTTCTTTCTC
TCTCTCACTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTT
TCAGGTCTCAAACGAGCCAGGTCTACTCAAAtttacattatttttcaaat
atctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCG
AANGTTGTCAATGTCTTTCACTGCAATATGAAGTCACTCAACTTCactta
ctttcgttttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATG
GTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAG
AAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATATAATGA
AGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATGATCCTG
AGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttcaggCAATTTTA
CAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATTTTTTACgtctt
tttgttttataagaaacttttcaaaatcattttaaactTTCTCATTTTCC
TCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAAG
AAATTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAGAG
TGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAG
TTGATGAGGCAAATCCTGATGATGATAAATTTGATCCTAAGGTATTGTTT
GCACAGAAtttctttctctctctctcacTTTAAAGCCAATATTGTGCATC
TCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGATCTACTcaa
atttacaatatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGA
AGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATTATTGTT
CTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGA
ACCAGTTCAATATGAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATG
ATAAATATGATCCTAAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTC
ACTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGT
CTCAAACGAGCCAGGTCTACTCAAAtttacattatttttcaaatatctcC
TCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAG
AAATTCCGCCGACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAG
TGGAGATGAGGAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATG
AAGAAGTTGAAATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCA
AAAGTAAATAATTGATGTGACTTTCTTCAGTTTCTCTTACTTCATTACCT
ATGCCACATTTTGACATCTTgttttttacaatttcttaacTTAACTTGAT
ACATCACATTTTAGGCTTCCCAggcagtcacaacttaaccatcttttaat
tttttttaggagTGGGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAA
AGTACGCGTCAGACGGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGC
CTGAAGATCTGGTGAATGAAAATGAAGTGACTGTCGAAGAAATGCCACTC
AATGAAAATGCTCCAACACAAGAAGATGATGACAAGTTTGACCCTGAGGT
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019920-exon-sc0000339-1491911889:287874..288081TCONS_00019920-exon-sc0000339-1491911889:287874..288081Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:287874..288081TCONS_00019920-exon-sc0000339-1510915933:287874..288081Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:287874..288081TCONS_00019920-exon-sc0000339-1575043694:287874..288081Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:288451..288549TCONS_00019920-exon-sc0000339-1491911889:288451..288549Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:288451..288549TCONS_00019920-exon-sc0000339-1510915933:288451..288549Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:288451..288549TCONS_00019920-exon-sc0000339-1575043694:288451..288549Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:288676..288718TCONS_00019920-exon-sc0000339-1491911889:288676..288718Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:288676..288718TCONS_00019920-exon-sc0000339-1510915933:288676..288718Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:288676..288718TCONS_00019920-exon-sc0000339-1575043694:288676..288718Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:288860..288935TCONS_00019920-exon-sc0000339-1491911889:288860..288935Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:288860..288935TCONS_00019920-exon-sc0000339-1510915933:288860..288935Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:288860..288935TCONS_00019920-exon-sc0000339-1575043694:288860..288935Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:289151..289195TCONS_00019920-exon-sc0000339-1491911889:289151..289195Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:289151..289195TCONS_00019920-exon-sc0000339-1510915933:289151..289195Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:289151..289195TCONS_00019920-exon-sc0000339-1575043694:289151..289195Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:289367..289419TCONS_00019920-exon-sc0000339-1491911889:289367..289419Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:289367..289419TCONS_00019920-exon-sc0000339-1510915933:289367..289419Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:289367..289419TCONS_00019920-exon-sc0000339-1575043694:289367..289419Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:289632..289699TCONS_00019920-exon-sc0000339-1491911889:289632..289699Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:289632..289699TCONS_00019920-exon-sc0000339-1510915933:289632..289699Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:289632..289699TCONS_00019920-exon-sc0000339-1575043694:289632..289699Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:289794..289840TCONS_00019920-exon-sc0000339-1491911889:289794..289840Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:289794..289840TCONS_00019920-exon-sc0000339-1510915933:289794..289840Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:289794..289840TCONS_00019920-exon-sc0000339-1575043694:289794..289840Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:289979..290066TCONS_00019920-exon-sc0000339-1491911889:289979..290066Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:289979..290066TCONS_00019920-exon-sc0000339-1510915933:289979..290066Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:289979..290066TCONS_00019920-exon-sc0000339-1575043694:289979..290066Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:290173..290322TCONS_00019920-exon-sc0000339-1491911889:290173..290322Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:290173..290322TCONS_00019920-exon-sc0000339-1510915933:290173..290322Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:290173..290322TCONS_00019920-exon-sc0000339-1575043694:290173..290322Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:290423..290592TCONS_00019920-exon-sc0000339-1491911889:290423..290592Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:290423..290592TCONS_00019920-exon-sc0000339-1510915933:290423..290592Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:290423..290592TCONS_00019920-exon-sc0000339-1575043694:290423..290592Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:293098..293255TCONS_00019920-exon-sc0000339-1491911889:293098..293255Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:293098..293255TCONS_00019920-exon-sc0000339-1510915933:293098..293255Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:293098..293255TCONS_00019920-exon-sc0000339-1575043694:293098..293255Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:293376..293482TCONS_00019920-exon-sc0000339-1491911889:293376..293482Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:293376..293482TCONS_00019920-exon-sc0000339-1510915933:293376..293482Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:293376..293482TCONS_00019920-exon-sc0000339-1575043694:293376..293482Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:293668..293853TCONS_00019920-exon-sc0000339-1491911889:293668..293853Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:293668..293853TCONS_00019920-exon-sc0000339-1510915933:293668..293853Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:293668..293853TCONS_00019920-exon-sc0000339-1575043694:293668..293853Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:294645..294830TCONS_00019920-exon-sc0000339-1491911889:294645..294830Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:294645..294830TCONS_00019920-exon-sc0000339-1510915933:294645..294830Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:294645..294830TCONS_00019920-exon-sc0000339-1575043694:294645..294830Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:295959..296144TCONS_00019920-exon-sc0000339-1491911889:295959..296144Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:295959..296144TCONS_00019920-exon-sc0000339-1510915933:295959..296144Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:295959..296144TCONS_00019920-exon-sc0000339-1575043694:295959..296144Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:296422..296607TCONS_00019920-exon-sc0000339-1491911889:296422..296607Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:296422..296607TCONS_00019920-exon-sc0000339-1510915933:296422..296607Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:296422..296607TCONS_00019920-exon-sc0000339-1575043694:296422..296607Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:297529..297714TCONS_00019920-exon-sc0000339-1491911889:297529..297714Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:297529..297714TCONS_00019920-exon-sc0000339-1510915933:297529..297714Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:297529..297714TCONS_00019920-exon-sc0000339-1575043694:297529..297714Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:297855..298040TCONS_00019920-exon-sc0000339-1491911889:297855..298040Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:297855..298040TCONS_00019920-exon-sc0000339-1510915933:297855..298040Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:297855..298040TCONS_00019920-exon-sc0000339-1575043694:297855..298040Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:298179..298376TCONS_00019920-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:298179..298376TCONS_00019920-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:298179..298376TCONS_00019920-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1491911889:298533..298726TCONS_00019920-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1510915933:298533..298726TCONS_00019920-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019920-exon-sc0000339-1575043694:298533..298726TCONS_00019920-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:287874..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.248485	0	0	0	0.147234	0.110408	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00019920 vs. Swiss-Prot (Human)
Match: E41L2 (Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 5.162e-67
Identity = 141/351 (40.17%), Postives = 207/351 (58.97%), Query Frame = 2 
Query:   98 NSSAAETNSKKSKKKSGPQYECVITCLDGSVINTSVEKSAKGEELVNKVAQELDVKSKDYVGLLFNNGTRQ--WLDIHKDMKHQLGDSKAEFLFRVKFYEPEPSKIQEDHLRYLLYLQIREDLSEKRLKCTEEVIAQLGAYTAQAEVGDFNLSEHEHDYLKDYEFA--ENTDILERINLLHKQHRGQTPLQAELNFLEIAKKIPRYGVDVHDAMDTNG-HVEIGIAALGINIYRDGKREQLFRWQNMHDFNYNRRKFTIKLKQPVSDNDNKKNYVYYFESAKSCKQCYKVAVEYHSFFRLTRPDAPRKRADTLKMGSSFRYSDRTLYQLRYQKGDEAPKNAANFKRTPSTR 1135
            N   AE  S+K  KK+    +C +T LDG+  +  +EK AKG+ L +KV + L++  KDY GLLF     Q  WLD  K++K QL +    F F VKFY P+PS++ ED  RY L LQ+R+D++  RL C+    A LG+YT QAE+GD++  EH    L +++FA  +  ++ E++  LHK HRG +P QA+  FLE AK++  YGVD+H A D+ G  +++G+ A G+ IY+D  R   F W  +   +Y R  F IK++ P      +    +   + ++ K+ +KV VE+H+F+RL  P+ P K A  L +GS FRYS RT  Q R Q      + A +F+RT S R
Sbjct:  200 NELKAEKASQKVTKKTK-TVQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPEQKNWLDPAKEIKRQLRNLPWLFTFNVKFYPPDPSQLTEDITRYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSIDLSEFQFAPTQTKELEEKVAELHKTHRGLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANGLLIYKDRLRINRFAWPKILKISYKRSNFYIKVR-PAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRLVSPEQPPK-AKFLTLGSKFRYSGRTQAQTR-QASTLIDRPAPHFERTSSKR 546
The following BLAST results are available for this feature:
BLAST of TCONS_00019920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E41L25.162e-6740.17Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2... [more]
back to top