TCONS_00019898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019898
Unique NameTCONS_00019898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019898 ID=TCONS_00019898|Name=TCONS_00019898|organism=Clytia hemisphaerica|type=transcript|length=2889bp
GTcctgcatgttttcatgttgtcCTAAAATAGATCAGTTAGAGAGAAAAA
ACAAAGAGTTCCTGTGTTTGAAAGTCTCTTCTTTTATATATTTAGTTATa
ataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTTTCCAATGT
AGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActcaaagaaat
caaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACATGCTTGGAT
GGCTCTGTGATCAACACTTCTGTTGAGaaaTCAGCCAAAGGAGAAGAACT
AGTCAATAAAGTAGCTCAAGAACTTGATGTGAAATCGAAAGATTATGTTG
GTCTCCTTTTCAATAATGGAACAAGGcaatGGTTGGATATTCATAAAGAT
ATGAAACATCAGTTGGGAGatTCTAAAGCAGAATTTTTATTTCGGGTCAA
ATTCTATGAGCCTGAGCCCAGCAAAATTCAAGAAGATCATTTAAGATATT
TACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGATTAAAATGC
ACAGAAGAAGTAATTGCTCAACTTGGTGCATATACTGCACAAgcTGAAGT
AGGAGACTTCAATTTATCAGAGCATGAGCATGATTACTTGAAAGATTATG
AGTTTGCTGAGAATACCGATATACTTGAAAGAATCAATTTATTGCACAAA
CAACACAGGGGTCAAACACCTTTACAAGCTGAACTTAACTTTTTGGAAAT
TGCCAAAAAGATTCCTAGATATGGAGTGGACGTACATGATGCCATGGATA
CCAATGGGCATGTAGAGATTGGTATTGCTGCTTTAGGAATAAACATCTAT
CGGGATGGAAAGCGTGAACAGCTTTTCAGATGGCAAAATATGCATGACTT
CAATTACAACCGAAGAAAATTCACCATTAAACTCAAACAACCAGTGAGCG
ACAATGACAATAAGAAGAATTACGTATATTATTTCGAATCTGCTAAAAGC
TGCAAACAATGCTACAAAGTGGCTGTTGAATATCATTCTTTCTTCCGATT
GACAAGACCTGATGCTCCACGAAAACGTGCTGACACCTTGAAAATGGGAT
CTAGCTTCAGATACAgTGATCGAACCTTGTATCAACTGAGATACCAAAAA
GGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACGCCAAGCAC
AAGGAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGAACCTGAAG
TGCCATTCATTGAACCAACTAAAGTGGCACCACTTGAAGAAGAACCAGTC
CACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGATGAAGC
CAATCCTGATGATGATAACTTTGATCCtgagGAATGGGAAACAGTTGAGA
AGACGATGCCTGATGGTTCGAAGAAGAAATCCCGTCGACGGGTCATCGTT
CTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTTGAAGAACC
AGTTCAATATTATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATG
ATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATGCCTGAT
GGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAA
GAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATG
AAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCT
AAGGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAA
ATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTG
GGAAATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTC
GATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGAATGGGAAAC
AGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTA
ATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTC
GAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCC
TGATGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGA
TGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAAT
GTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCA
ATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAAT
ATGATCCTGAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCG
AAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAAACC
AAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAG
TGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGAA
TGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCG
CCGACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATG
AGGAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTT
GAAATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAgagTG
GGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGAC
GGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTG
AATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCC
AACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:287805..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019898 ID=TCONS_00019898|Name=TCONS_00019898|organism=Clytia hemisphaerica|type=transcript|length=10922bp|location=Sequence derived from alignment at sc0000339:287805..298726+ (Clytia hemisphaerica)
GTcctgcatgttttcatgttgtcCTAAAATAGATCAGTTAGAGAGAAAAA
ACAAAGAGTTCCTGTGTTTGAAAGTCTCTTCTTTTATATATTTAGTTATa
ataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTTTCCAATGT
AGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActcaaagaaat
caaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACATGCTTGGAT
GGCTCTGTGATCAACACTTCTGTTGAGGTTTGAAGTTTTTATTTTCCcct
tgaattttgatttttgtcatCATGATCATGTATAGGCAAATGGAAAAAAA
GCTATTAAATTTATCTCCAAAGTTAGTTTCTTGATTTGATTGGGTtggaa
tatttattttttgtctaCAAGAACAGGTTGGgtttaattaaattttaatt
CCAAATAGTGTGTTATACAGATTGTAAGTGTATATTTAATGGTAATTGAT
TCGGATTAGGCtggacggcaaaccaacaattttttaagtccagccttatT
TTGACCTCTAAAAGGCCCTTATAAAGTGCACAAAGAATTTTATCAATGAT
AATGTGTTTCTATAACCAATacaacaaagggttttttcgattttagaaaT
CAGCCAAAGGAGAAGAACTAGTCAATAAAGTAGCTCAAGAACTTGATGTG
AAATCGAAAGATTATGTTGGTCTCCTTTTCAATAATGGAACAAGGGTAag
attttcagaatattttccTATTGTAAAAAGCTTAACATTTTcaggataat
ttttttcattttaccaTGCACAGGAGTACCTTtccagaaaattattttga
taaacttattttatttttcagcaatGGTTGGATATTCATAAAGATATGAA
ACATCAGTTGGGAGGTTGGTACTTCTTCAGTtttgtttttggaatttttt
ttagtgaaaatctttaaattatGCATAACTTGCCCATTTCATTTCTCTTT
ATGAATTATTTAGCAAGGAAGAGGTGTTTTCAAATgtgctttttatttat
ttcagatTCTAAAGCAGAATTTTTATTTCGGGTCAAATTCTATGAGCCTG
AGCCCAGCAAAATTCAAGAAGATCATTTAAGGTTTGTTATTTGTTTTCCC
CTTTCtatacaaaaatgtttttgtttgaccCAGCTTTATATTTTTTGCTC
AAGTCTCAATATATTGACTGAATTATTTACTCAAtgcaaattcaaattca
aaaacaaatgttttttattccttttaatgattttagtgaaacaggttttt
aaattttggaattcttttgaaacccattaaatttttgtgttttcagATAT
TTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGGTAAATAAT
GTTTATCTAGTTAACAAATTGTGTTGGTATAGGTTTCCATGGAGAAGTTG
GATTACAGCTTATTctaattaatgtaattaaagtATATCCTTTAATCATC
AAAATTACTTGGCACTTAGCAGCCATATTATTGATTTTAAtgacatcatt
tttttctttaagattAAAATGCACAGAAGAAGTAATTGCTCAACTTGGTG
CATATACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTGTCAT
TATTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTTTAAA
AGTCTTAACTgatatttttcaacatttaaaaaattgagattcCAATACAT
ATATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAacttat
ttgaaatttcaattgatattttttcagcTGAAGTAGGAGACTTCAATTTA
TCAGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGGTAAG
TAAAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCACCCTA
AAGGAACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCGATAT
ACTTGAAAGAATCAATTTATTGCACAAACAACACAGGtattcattttctt
catttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGATAAT
GCAATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCATAAT
AATTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCTGAAC
TTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTA
CATGATGCCATGGTAGGTATTTTAAGAACAAAATGAAGTTTAAGCAACCC
AAACAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATTGAATG
TTCTTTTTTTGTCTTTAGGATACCAATGGGCATGTAGAGATTGGTATTGC
TGCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTTTTCA
GATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCACCATT
AAACTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAGTAAT
TCTATTTTAATTTTGTAAAGCGTCACAtgtttctaaaatattcagtaatt
ttaaatgttttatttcaGAGCGACAATGACAATAAGAAGAATTACGTATA
TTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCTGTTG
AATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAAACGT
GCTGACACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaaaatt
gttttcacaaaatatttatttcaccACTAACTCCACTTCTATCTCAACTA
AAGTGAAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTTCTAA
ATTAGAAGGTTGATTTaatgcatgttttttttataacaacatccaaaaaa
ttttaagccttcggaatcggatgttcttaactttttcatttttaagccta
agaatgttcttaaaatcttcttaatttctacattttttgagtgtttttgt
gcaattttgaaagaaatcgagtgttttagagcccatgaagccttaaaatg
ttgttaACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCTtatc
ttatatagtttgttcttattaaaaaagcgtgtatgttcTTTCTTTTCAGT
GATCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCTAA
AAATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACCTC
CTTCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAACCA
ACTAAAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTATTTCT
GGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTT
TCTTTAAGATTAAAATGCACAGAAGAAGTAATTGCTCAACTTGGTGCATA
TACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTGTCATTATT
TAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTTTAAAAGTC
TTAACTgatatttttcaacatttaaaaaattgagattcCAATACATATAT
AAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAacttatttga
aatttcaattgatattttttcagcTGAAGTAGGAGACTTCAATTTATCAG
AGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGGTAAGTAAA
GTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCACCCTAAAGG
AACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCGATATACTT
GAAAGAATCAATTTATTGCACAAACAACACAGGtattcattttcttcatt
tttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGATAATGCAA
TGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCATAATAATT
ACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCTGAACTTAA
CTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTACATG
ATGCCATGGTAGGTATTTTAAGAACAAATGAAGTTTAAGCAACCCAAACA
ACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATtaaatgttctt
tttttgtCTTTAGGATACCAATGGGCATGTAGAGATTGGTATTGCTGCTT
TAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTTTTCAGATGG
CAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCACCATTAAACT
CAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAGTAATTCTAT
TTTAATTTTGTAAAGCGTCACATGTTTCTAAAACATTCagtaattttaaa
tgttttatttcaGAGCGACAATGACAATAAGAAGAATTACGTATATTATT
TCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCTGTTGAATAT
CATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAAACGTGCTGA
CACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaaaattgtttt
cacaaaatatttatttcaccACTAACTCCACTTCTATCTCAACTAAAGTG
AAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTTCTAAATTAG
AAGGTTGATTTaatgcatgttttttttataacaacatccaaaaattttaa
gcTTTCGGAATCGgatcttcttaactttttcagttttaagcctaagaatg
ttcttaaaatcttcttaatttctacattttttgagtgtttttgtgcaatt
ttgaaagaaatcgagtgttttagagcccatgaagccttaaaatgttgtta
ACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCTtatcttatat
agtttgttcttattaaaaaagcgtgtatgttcTTTCTTTTCAGTGATCGA
ACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCTAAAAATGC
TGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACCTCCTTCTT
ACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAACCAACTAAA
GGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTATttctggtttt
tacacaaaaaattGTGGTTGGAATATATGTCTGGAGACTGAAGActaaat
tttcaaatctttttccttTAGTGGCACCACTTGAAGAAGAACCAGTCCAC
TATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGATGAAGCCAA
TCCTGATGATGATAACTTTGATCCtgaggtattttttattttggggAGCC
TTTCGATGCTATTCTACAGTTTACTACAGTTGAATTAGTTCAGTTTTTTT
tgctggaaatttttttatcttttcgtTTTATGAGAAACTTGGATTCATAA
GAAACTTGAAGAACTTTTTATTAAATCTTCAAAGTCATTGAAAACTTTAT
CACTTTCCTCTAGGAATGGGAAACAGTTGAGAAGACGATGCCTGATGGTT
CGAAGAAGAAATCCCGTCGACGGGTCATCGTTCTTAATGTTGTGAAGAAA
CCAAAGAGTGGGAAATCTCCAGTTGAAGAACCAGTTCAATATTATGAAGA
AGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGG
TATATTGTTAGCACAGAATTTCCTTTTCCGAAATCTTCAGTGTGACCTGA
AGATCTGGAAAACGAtaagattttgctgaaattttgcctACTCTGACatg
tcttttttttcctttNCGGATTTGGCTTATATTTTGCGCACTCTGACATG
TCTCTATtcctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGT
TCTTATCAATTTATAATATACTAAATTTAAGCCCATTCGACTATGAAATA
AAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATC
AACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACGGTCGAGAATAC
GATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTA
ATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTT
CAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAA
ATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacat
cGGGGTGACCTGGAGATTGGGGGAACGATCGGATTTGGCTTATATTTTGC
GCACTCTGACATGTCTCTATtcctttttttgcttgagacgAGCTTTGTAC
GATAGCTTCGCGTTCTTATCAATTTATAATATACTAAATTTAAGCCCATT
CGACTATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCAT
TTTGAACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAA
CGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGT
AATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGT
CGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATC
CTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttt
tttctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGCATTTG
GCTGAAGTTTTGCGCACTCTGACATgtctctatttctttttttgcttgag
acgAGCTTTGTACGATAGCTTCGCGTTCTTAGTTATtgagaaaatattga
atttaagCCCATTCGACTATGAAATAAGTTGTCAATGTCTTTCACTGCAA
TATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGGAAA
CGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGT
AATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGT
CGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGATGAAGCCAATC
CTGATGATGATAAATATGATCCTGAGGTATTTTTTATTTGGGGAAAGCct
ttcaatgcaattttacaGGTGACGAGTTCAGTATTTTTTGCTGGAATTTT
TTACGTCTTTTcgttttataagaaatttttcaaaatcattttaaactTTC
TCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGT
TCAAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAA
ACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAC
AAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAG
GTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGG
AGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATg
tctctatttctttttttgcttgagacgAGCTNGGGGGAACGATCGGATTT
GGCTTATATTTTGCGCACTCTGACATGTCTCTATtcctttttttgcttga
gacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATATACTA
AATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCATC
TGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTCTTCT
TCAGGAATGGGAAACAGTCGAGAATACGATGCCTGATGGTTCGAAGAAGA
AATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGT
GGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGT
TGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAG
CAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAGATTCGGAG
AACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatttc
tttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTTAT
tgagaaaatattgaatttaagCCCATTCGACTATGAAATAAAAAGTTGCC
AATGTCTTTCACCTGCTTTCACTGCAATATGAAGTCACTCAACTTCactt
actttcgttttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTGAT
GGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAA
GAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATATAATG
AAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATGATCCT
GAGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttcaggCAATTTT
ACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATTTTTTACGTct
ctttgttttataagaaacttttcaaaatcattttaaactTTCTCATTTTC
CTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAA
AAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAGA
GTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAA
GTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTATAGTT
AGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGCATCT
CCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCAAA
tttacattatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGAA
GACGATGCCTGATGGTTCGAANGTTGTCAATGTCTTTCACTGCAATATGA
AGTCACTCAACTTCacttactttcgttttcttcagGAATGGGAAACGGTC
GAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATAT
CGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAG
AACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGAT
GATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttcact
gaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTG
CTGGAATTTTTTACgtctttttgttttataagaaacttttcaaaatcatt
ttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGAT
GCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAACCATTGTTCTTAATG
TTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTT
CAATATGAAGAAGTGGAAGTTGATGAGGCAAATCCTGATGATGATAAATT
TGATCCTAAGGTATTGTTTGCACAGAAtttctttctctctctctcacTTT
AAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAA
ACGAGCCAGATCTACTcaaatttacaatatttttcaaatatctcCTCTAG
GAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATT
CCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGA
AATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGAT
GAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTATAGTTAGCACA
GAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGCATCTCCGAGT
CATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCAAAtttaca
ttatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACGAT
GCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCATTGTTCTTAATG
TTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGTCAGAAGTCGAC
GAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAAGCCAACCCTCA
AGATGATCAATTTGATCCAAAAGTAAATAATTGATGTGACTTTCTTCAGT
TTCTCTTACTTCATTACCTATGCCACATTTTGACATCTTgttttttacaa
tttcttaacTTAACTTGATACATCACATTTTAGGCTTCCCAggcagtcac
aacttaaccatcttttaattttttttaggagTGGGAAGTTGTGGAGAAAG
AAAAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTCGTGTCGTCATT
TTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAAAATGAAGTGAC
TGTCGAAGAAATGCCACTCAATGAAAATGCTCCAACACAAGAAGATGATG
ACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019898-exon-sc0000339-1491911889:287805..288081TCONS_00019898-exon-sc0000339-1491911889:287805..288081Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:287805..288081TCONS_00019898-exon-sc0000339-1510915933:287805..288081Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:287805..288081TCONS_00019898-exon-sc0000339-1575043694:287805..288081Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:288451..288549TCONS_00019898-exon-sc0000339-1491911889:288451..288549Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:288451..288549TCONS_00019898-exon-sc0000339-1510915933:288451..288549Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:288451..288549TCONS_00019898-exon-sc0000339-1575043694:288451..288549Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:288676..288718TCONS_00019898-exon-sc0000339-1491911889:288676..288718Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:288676..288718TCONS_00019898-exon-sc0000339-1510915933:288676..288718Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:288676..288718TCONS_00019898-exon-sc0000339-1575043694:288676..288718Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:288860..288935TCONS_00019898-exon-sc0000339-1491911889:288860..288935Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:288860..288935TCONS_00019898-exon-sc0000339-1510915933:288860..288935Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:288860..288935TCONS_00019898-exon-sc0000339-1575043694:288860..288935Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:289151..289195TCONS_00019898-exon-sc0000339-1491911889:289151..289195Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:289151..289195TCONS_00019898-exon-sc0000339-1510915933:289151..289195Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:289151..289195TCONS_00019898-exon-sc0000339-1575043694:289151..289195Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:291463..291515TCONS_00019898-exon-sc0000339-1491911889:291463..291515Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:291463..291515TCONS_00019898-exon-sc0000339-1510915933:291463..291515Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:291463..291515TCONS_00019898-exon-sc0000339-1575043694:291463..291515Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:291728..291795TCONS_00019898-exon-sc0000339-1491911889:291728..291795Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:291728..291795TCONS_00019898-exon-sc0000339-1510915933:291728..291795Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:291728..291795TCONS_00019898-exon-sc0000339-1575043694:291728..291795Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:291890..291936TCONS_00019898-exon-sc0000339-1491911889:291890..291936Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:291890..291936TCONS_00019898-exon-sc0000339-1510915933:291890..291936Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:291890..291936TCONS_00019898-exon-sc0000339-1575043694:291890..291936Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:292075..292162TCONS_00019898-exon-sc0000339-1491911889:292075..292162Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:292075..292162TCONS_00019898-exon-sc0000339-1510915933:292075..292162Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:292075..292162TCONS_00019898-exon-sc0000339-1575043694:292075..292162Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:292268..292417TCONS_00019898-exon-sc0000339-1491911889:292268..292417Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:292268..292417TCONS_00019898-exon-sc0000339-1510915933:292268..292417Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:292268..292417TCONS_00019898-exon-sc0000339-1575043694:292268..292417Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:292518..292687TCONS_00019898-exon-sc0000339-1491911889:292518..292687Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:292518..292687TCONS_00019898-exon-sc0000339-1510915933:292518..292687Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:292518..292687TCONS_00019898-exon-sc0000339-1575043694:292518..292687Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:293098..293255TCONS_00019898-exon-sc0000339-1491911889:293098..293255Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:293098..293255TCONS_00019898-exon-sc0000339-1510915933:293098..293255Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:293098..293255TCONS_00019898-exon-sc0000339-1575043694:293098..293255Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:293376..293482TCONS_00019898-exon-sc0000339-1491911889:293376..293482Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:293376..293482TCONS_00019898-exon-sc0000339-1510915933:293376..293482Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:293376..293482TCONS_00019898-exon-sc0000339-1575043694:293376..293482Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:293668..293853TCONS_00019898-exon-sc0000339-1491911889:293668..293853Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:293668..293853TCONS_00019898-exon-sc0000339-1510915933:293668..293853Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:293668..293853TCONS_00019898-exon-sc0000339-1575043694:293668..293853Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:294645..294830TCONS_00019898-exon-sc0000339-1491911889:294645..294830Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:294645..294830TCONS_00019898-exon-sc0000339-1510915933:294645..294830Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:294645..294830TCONS_00019898-exon-sc0000339-1575043694:294645..294830Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:295095..295280TCONS_00019898-exon-sc0000339-1491911889:295095..295280Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:295095..295280TCONS_00019898-exon-sc0000339-1510915933:295095..295280Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:295095..295280TCONS_00019898-exon-sc0000339-1575043694:295095..295280Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:295959..296144TCONS_00019898-exon-sc0000339-1491911889:295959..296144Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:295959..296144TCONS_00019898-exon-sc0000339-1510915933:295959..296144Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:295959..296144TCONS_00019898-exon-sc0000339-1575043694:295959..296144Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:297190..297375TCONS_00019898-exon-sc0000339-1491911889:297190..297375Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:297190..297375TCONS_00019898-exon-sc0000339-1510915933:297190..297375Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:297190..297375TCONS_00019898-exon-sc0000339-1575043694:297190..297375Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:297855..298040TCONS_00019898-exon-sc0000339-1491911889:297855..298040Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:297855..298040TCONS_00019898-exon-sc0000339-1510915933:297855..298040Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:297855..298040TCONS_00019898-exon-sc0000339-1575043694:297855..298040Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:298179..298376TCONS_00019898-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:298179..298376TCONS_00019898-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:298179..298376TCONS_00019898-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1491911889:298533..298726TCONS_00019898-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1510915933:298533..298726TCONS_00019898-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019898-exon-sc0000339-1575043694:298533..298726TCONS_00019898-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:287805..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.199767	0	0	0.182416	0	0	0	0	0	0	0	0.15809	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00019898 vs. Swiss-Prot (Human)
Match: E41L2 (Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.136e-67
Identity = 141/351 (40.17%), Postives = 207/351 (58.97%), Query Frame = 2 
Query:  167 NSSAAETNSKKSKKKSGPQYECVITCLDGSVINTSVEKSAKGEELVNKVAQELDVKSKDYVGLLFNNGTRQ--WLDIHKDMKHQLGDSKAEFLFRVKFYEPEPSKIQEDHLRYLLYLQIREDLSEKRLKCTEEVIAQLGAYTAQAEVGDFNLSEHEHDYLKDYEFA--ENTDILERINLLHKQHRGQTPLQAELNFLEIAKKIPRYGVDVHDAMDTNG-HVEIGIAALGINIYRDGKREQLFRWQNMHDFNYNRRKFTIKLKQPVSDNDNKKNYVYYFESAKSCKQCYKVAVEYHSFFRLTRPDAPRKRADTLKMGSSFRYSDRTLYQLRYQKGDEAPKNAANFKRTPSTR 1204
            N   AE  S+K  KK+    +C +T LDG+  +  +EK AKG+ L +KV + L++  KDY GLLF     Q  WLD  K++K QL +    F F VKFY P+PS++ ED  RY L LQ+R+D++  RL C+    A LG+YT QAE+GD++  EH    L +++FA  +  ++ E++  LHK HRG +P QA+  FLE AK++  YGVD+H A D+ G  +++G+ A G+ IY+D  R   F W  +   +Y R  F IK++ P      +    +   + ++ K+ +KV VE+H+F+RL  P+ P K A  L +GS FRYS RT  Q R Q      + A +F+RT S R
Sbjct:  200 NELKAEKASQKVTKKTK-TVQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPEQKNWLDPAKEIKRQLRNLPWLFTFNVKFYPPDPSQLTEDITRYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSIDLSEFQFAPTQTKELEEKVAELHKTHRGLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANGLLIYKDRLRINRFAWPKILKISYKRSNFYIKVR-PAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRLVSPEQPPK-AKFLTLGSKFRYSGRTQAQTR-QASTLIDRPAPHFERTSSKR 546
The following BLAST results are available for this feature:
BLAST of TCONS_00019898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E41L26.136e-6740.17Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2... [more]
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