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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019893 ID=TCONS_00019893|Name=TCONS_00019893|organism=Clytia hemisphaerica|type=transcript|length=1574bp
TACAGAAATAAATAACACAGAATAAACactgtaaaataaaattaaaatgg
tAGTCGGTGATGGGAACTTCAATGTGGGTCAACTGATAAAGTTTGATTGG
AAGTTGAGTATGGCATGTAGCTCAAACAATTGTAAGAATCTAGATGCGCC
GACAGTGACGTTGAAATTCCATTTGAAGGATGAATGTAACCAAGAAACGA
CCAAAACCGTTGAGATGACGCTCAATGAATTCCAGAATTTCTCAAGGCAA
GTGAAAGAAGCAAAGGCGGTTCTTGCGACGACTTGATTTGGTATGAAATA
ATTTATTCATTGGCCGATGGAATGTATTTAACAAAATCATTTGATTCTCG
AACACGATCATTCAAATGctgtaaattttcaattcaaattttggcACTGC
TGAcagtggaaattttttttttaattcttaatttttcgtcTGCATTAGAA
AATAACACTAGGTAATAGAAACGCAAATAAAGTCATATAATGATAAAATT
AATAAGCTGATCCTGAGCCAATTTAATTTGACAAATTGTAGTCAAATTGA
GGGCATCCCATGATCCTATGCGTGCAAGCCCCCTTTTTTTCTGTTCGTTA
GGGAAAATGATGTTAATAGGGCCTAAAATAATAAAGCGTTTGAAGTGAAT
attcattttatgaaatttttgattttaatttagcttaaaataaaatcatt
tttgacaccgaaaaaaattcacaccttgagcatgatgacatgacACTAAG
ATGTCATAAAAAATTACACATTTTCATTACATTTCAATTTTATATagacc
gtaatttattgaatactTGGgaaaaaaatcaacctttttagCTTATTGAA
GACAAGGTTTTCTTAGGACTTTGTTAGTTTGCTATTGCTTTTTTAGAGAA
ACAAAGTAAATCTTcggcttttacgttttttgacgTCGACAATGATTTGC
GTGCcaaatattattaaaaaatggcaactagatcaaaagttgagggtggt
acaggaaaagtcCCCCTCGGtattgaaccgcccctaaaaacTTAGTACAA
ATAGGCATAAGGTTTAAGTATGCACAATATTATGTTTTACCTTAAACAAC
AGTCCGATTTTCTTGTATGCTTATAGAGAAATGAATTTAATAATAATTGT
TTAGTGACCATCTTGATTCTCATATAAAGGATcttctttttcaacttttt
ggacctaccccggtggaggtcctataaattaacctttgtccgttcgttcg
tctgttcgttattagctttcctcatgattggctcgttagttttttctgat
tttttgcacaaagatgcaaaactataaaccctcgaatgtgacggagcccg
attttcaaaaaaaaaaattggggggcaaaaaacggctaaaaaacgggttt
tttggactttgtgaaaaattaggtcgttaattttttctgattttttgcat
gaaagtagggtaccatcgtaggcaaaagatggcttaagcgaatttttgca
aaaaaaatttgttggctcaaaaaacgcatgtttatctataggaatcacta
ttaataagcatacatcaatgttct Run BLAST on NCBI transcript from alignment at sc0000339:277525..279274+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019893 ID=TCONS_00019893|Name=TCONS_00019893|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at sc0000339:277525..279274+ (Clytia hemisphaerica)
TACAGAAATAAATAACACAGAATAAACactgtaaaataaaattaaaatgg
tAGTCGGTGATGGGAACTTCAATGTGGGTCAACTGATAAAGTTTGATTGG
AAGTTGAGTATGGCATGTAGCTCAAACAATTGTAAGAATCTAGATGCGCC
GACAGTGACGTTGAAATTCCATTTGAAGGATGAATGTAACCAAGAAACGA
CCAAAACCGTTGAGATGACGCTCAATGAATTCCAGGTGACCTCATACTTT
CTGGTGTCCGAAATCTACTGGAAGTTTCGTTTTGAAGTTACGTTACAAGG
AGTAAAGTTTTCTCGGAAAATCCTACATTTCTTTGTTATAGTTTCATCAT
TTAGTTAACAATTTCAAAGCAGCAGCATTTCCTTTAAATCGATTCTGTTT
CAATTTTGTAGAATTTCTCAAGGCAAGTGAAAGAAGCAAAGGCGGTTCTT
GCGACGACTTGATTTGGTATGAAATAATTTATTCATTGGCCGATGGAATG
TATTTAACAAAATCATTTGATTCTCGAACACGATCATTCAAATGctgtaa
attttcaattcaaattttggcACTGCTGAcagtggaaattttttttttaa
ttcttaatttttcgtcTGCATTAGAAAATAACACTAGGTAATAGAAACGC
AAATAAAGTCATATAATGATAAAATTAATAAGCTGATCCTGAGCCAATTT
AATTTGACAAATTGTAGTCAAATTGAGGGCATCCCATGATCCTATGCGTG
CAAGCCCCCTTTTTTTCTGTTCGTTAGGGAAAATGATGTTAATAGGGCCT
AAAATAATAAAGCGTTTGAAGTGAATattcattttatgaaatttttgatt
ttaatttagcttaaaataaaatcatttttgacaccgaaaaaaattcacac
cttgagcatgatgacatgacACTAAGATGTCATAAAAAATTACACATTTT
CATTACATTTCAATTTTATATagaccgtaatttattgaatactTGGgaaa
aaaatcaacctttttagCTTATTGAAGACAAGGTTTTCTTAGGACTTTGT
TAGTTTGCTATTGCTTTTTTAGAGAAACAAAGTAAATCTTcggcttttac
gttttttgacgTCGACAATGATTTGCGTGCcaaatattattaaaaaatgg
caactagatcaaaagttgagggtggtacaggaaaagtcCCCCTCGGtatt
gaaccgcccctaaaaacTTAGTACAAATAGGCATAAGGTTTAAGTATGCA
CAATATTATGTTTTACCTTAAACAACAGTCCGATTTTCTTGTATGCTTAT
AGAGAAATGAATTTAATAATAATTGTTTAGTGACCATCTTGATTCTCATA
TAAAGGATcttctttttcaactttttggacctaccccggtggaggtccta
taaattaacctttgtccgttcgttcgtctgttcgttattagctttcctca
tgattggctcgttagttttttctgattttttgcacaaagatgcaaaacta
taaaccctcgaatgtgacggagcccgattttcaaaaaaaaaaattggggg
gcaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattaggt
cgttaattttttctgattttttgcatgaaagtagggtaccatcgtaggca
aaagatggcttaagcgaatttttgcaaaaaaaatttgttggctcaaaaaa
cgcatgtttatctataggaatcactattaataagcatacatcaatgttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019893-exon-sc0000339-1491911889:277525..277759 | TCONS_00019893-exon-sc0000339-1491911889:277525..277759 | Clytia hemisphaerica | exon |
| TCONS_00019893-exon-sc0000339-1510915933:277525..277759 | TCONS_00019893-exon-sc0000339-1510915933:277525..277759 | Clytia hemisphaerica | exon |
| TCONS_00019893-exon-sc0000339-1575043694:277525..277759 | TCONS_00019893-exon-sc0000339-1575043694:277525..277759 | Clytia hemisphaerica | exon |
| TCONS_00019893-exon-sc0000339-1491911889:277936..279274 | TCONS_00019893-exon-sc0000339-1491911889:277936..279274 | Clytia hemisphaerica | exon |
| TCONS_00019893-exon-sc0000339-1510915933:277936..279274 | TCONS_00019893-exon-sc0000339-1510915933:277936..279274 | Clytia hemisphaerica | exon |
| TCONS_00019893-exon-sc0000339-1575043694:277936..279274 | TCONS_00019893-exon-sc0000339-1575043694:277936..279274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:277525..279274 + |
Blast
The following BLAST results are available for this feature:
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