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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019885 ID=TCONS_00019885|Name=TCONS_00019885|organism=Clytia hemisphaerica|type=transcript|length=2328bp
TTCGTAATATAATTGTAACATCCTTCCCATATAATTTACATAACTCAAAT
ACTCTCCAGTTTGACCCGACTGACTAATTCCAAACAAACAGTCAACGTCA
ATGGTCAAGTCAAGGCGTCATTGCCACAAAAGGTCACAGGTACTCAGTCT
CAGGGTTACACAGAAGACAAAATGGAAGGCGATAAATTACCTGATAGTTT
TGATGTAGTGATCATTGGAACAGGGTTAGGTGAGGCTATTGTAGCTGCGT
CTTTATCAAGGATTGGAAAAAGTGTACTTCATATCGACCGAAATGATTAT
TATGGTTCCCATTGGGCTACCTTCAACTTTGATTCCATTTTGAAATGGGC
AGACTGTTATCAGAAATGCAACGAAGAAGAAATATCAGATGAAAATGATA
AAGTCCCTTCTCACGACTCTGCTATTTCAAACATTGAAATCAGGTCTTTT
ATTCCTGAAACATCTCAAGTAAATGATATAGCTAAAAGCGAGGAGACTTC
TTCTGAGAAAGACTCAAGTGCTGCTTCAGATTCTGAGAAAGAAGATGTTC
CTTCAAACGATAAAAACACACCAGCAGAGGCTAACTGTGAAAATGAAAGC
ACAGAACAACCAAGTATAAATCAAGAAGCGGTTACTGATAACAGTGAAGG
AGTTGAACCACAAGAGGATGAACAACAGAAATCTGAAGAAAAACCTAAGC
CAAGTTTCTTCAATCCACCAAAACAATCTACCATTGTTAGCCAGgctaaa
atcaaacaaaaatctcCTGACATTTCATTAGAAGATTTCAATGCTTTATC
CAGAAGATTCAATTTAGATGTGAAtccaaagtttcttttttctgCTGGTC
CGCTAGTCAATGCTATCATTAAAGCCAACATTTCCCATTATTCAGAATTC
CAAGTTGTAAACCGAATTTTGACATGCAAGAACGACAGTATCATTGAAGT
ACCTTGTAATCGAAGTGATATTTTCAGTAGTTCCTTTCTATCAATGATAG
AGAAAAGAACCCTTATGAAATTTCTTACACTTTGTCTTGAGTTTGATGCA
GATTCACCGAGCGAAGATGTGAAAGAGTACCAGGAGAAATCTTTTGTGGA
ATTTCTTCAATCTAGAAGGTTGAGTGAAAACCTTCAAAAGTTCATCATCT
TTTCAATAGCAATGGTCAAGCCAAACACCTCGACACTCGAAGGTCTCAAA
GAAACTTGTTCATTCCTAAAATCACTTGGTCGCTATGGCAAATCCCCCTT
TATTTGGCCTCTGTATGGTGTGGGCGAACTACCACAGGCTTTCTGCCGAA
TGAGTGCTGTCTTTGGCGCACTTTATTGCTTGGGGAAATCACCTGTTGAA
CTCAAAATCGAGGAGAACAAATGTACACATGTAGTGCTGGAGAATCAAAC
CATTAAGTGTGCTCATGTTGTTATGAACCGTAGCTTTTTACCTCAATCTT
ATCTGAATCCATCAGTTAGCAGGAACAAAGTTTCAAAAGCCATTCTCATA
ACGAACGGATCAATATTGCCATCAGAGACTGAGTTTATATCCTTCCTAAC
TATACCTCCATTAGCTGGTAAAGAAGAACTAGTACGTGTTATAGAGTTAG
GACCCTCTGCTGCTGCTTGCCCCGCTGGTCTTTATGTTTTGTATTTGACA
TGTAAGTCCACTGGTAAAGCTTTGCAAGATTTGAAAGATTATGTTCACTT
ATTGACAGAAACACAAAGTGATGATAAACCAAAGTTATTATGGTCCATTT
ATTTCAATGAGCTAGCGGATAATAATGATGTGGTTGACTTACCAGAAAAC
CTTTCAGTGACAACAATGCCAGGGTCTTCTTTAGGTTTCAAAGACGTTGT
TGAGAATGCAGAGATGATTTCGAAGAGGATTTTCCCTGATGGTGAATTCT
TGATGACAGTGCCCAATGCGGAAGACATCGTTTGGGACACAGATAAAACC
CAAGAGGAGAAGAATGAGGAGGGGAATGAAAACAACGGAACAACGGAAGA
AGAAAAGCAAAATGAACAAGATCTCGAGCTTTCCCAAGTTGAACAGGGGA
AAAAGGAAGTAGAAAAAGATGGCGACAAAACAACGTAATGTCATTCCATA
AGGAAAagcttctttttatatatatgatttattcgaatttttgtatttta
aattaaacttttgaatataatagaatattttttcgttttatttgGATAAG
CATACAAATAGCTTTTACTTTAACTTTAGCGCTTTAGAGAATCTCTTATT
GAATGAATATCTTCCACTAGTGAAATGTTTAGCACTCAACTCGTCGTGAA
CGATTTACCTCTTCTCTCTATAAACAAG Run BLAST on NCBI transcript from alignment at sc0000339:240382..255763+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019885 ID=TCONS_00019885|Name=TCONS_00019885|organism=Clytia hemisphaerica|type=transcript|length=15382bp|location=Sequence derived from alignment at sc0000339:240382..255763+ (Clytia hemisphaerica)
TTCGTAATATAATTGTAACATCCTTCCCATATAATTTACATAACTCAAAT
ACTCTCCAGTTTGACCCGACTGACTAATTCCAAACAAACAGTCAACGTCA
ATGGTCAAGTCAAGGCGTCATTGCCACAAAAGGTCACAGGTACTCAGTCT
CAGGGTTACACAGGTAATATTTCTTGAATATTTCtaaatatgattttgac
cttTTACTCCTTAAAATTTGACTCCTCCTCCTGTCCCCTCCTCTTAGCCT
TAGGCTGGGGACAGCCTGCTCTGGAAAATGCTGTTTCACTACTTTTTTCA
TGTCATGTCATCATCCATCAAAATCAATCGATATCAATTGATTGGTCAAT
TGCTCATCAAATCAagaccagacgatctcaatcgaacggaatcgacgatc
gaaccagtcgaaccaaatcgaacgcaatcgaccgattgaaattcgattgt
cgaacgcaatcgaaccaatatcgaatattacccagaattttgacgtttga
ttgagattcgattgcgtccGACAATCggatttcaatcggtcgattgcgtt
cgatttggttcgactggttcgatcgtcgattccgttcgattgaaaTCGTT
TGGTCATAACGTATCAAATGGGAGAGTCTGGTAATAGTCAACATGATTGG
AATGTTTAGACTCATGGTATATATGATGGTTCGAACTTTTTTGGCACATA
TGTATGGCGGGAATGTTTGGGTCGGTCCTGCGTCTAGGATTTGAATCTCG
GGTACCTAACAGcccacaagtgttacgcgtaagccaaatcgcgtattacg
aacaacctctaaattgccggtacaggagaaaaaaaatcgaaattcaaaat
ggcggccaagcccacgctgataactatcaaaaatcttcgtttttcaatca
gttattgcagctcaataaatcaatgaaataatttgaagtaaaaagtaaac
aaaccttgaacctttcatgaatccaaataaataaaggtattcatctaaag
tgaagattacatttcaaattaaaacgatttccaaaccaacctaaagtcag
tgtctgccaactaaaaatttcttacTTAAAAAGTTACTTACTTCTCTGCG
Ggttcactggcaaggagttacgacttcagactttcaattccaattcttgt
ataggctgcaactacactgccagatgatctgtattacaaagacttccaaa
tgggtccataagttaagaaaatgagattatcatagagcacgggggttttg
tttttaaaaacaaacttcaaaataaaattgttaatgaacttcttactgtg
agattgggtaacttgcatcagtggaggctaacatgcatagccctcaaatg
aaagacctgactggtcattaaaatacaactacgcagctctgctcgcaacT
CTATACCCTACCTTTTTTgctttgatttaactttgtaccaggtctttcat
ttgagggctatgcatgttagcctccgctgatgcaagttacccaatctcac
ggtacttaaaatatcacttacttacataatttatatatgatataacaccc
ctttcttaaataaatggcctcttaaagtcttttatgtttgccgcaagaag
ggagaaacatttaatttgacccccggttttttctctctttttctaacaaa
ttaaattcccacgcgttagtgtagacacaactttaatccggagaaatgaa
gcgttttcattggtctaaaatcacggatggtcacgtgaccaaaattttta
tccagggaaatgccgtggccgcaatgttttgctttagtgagattgaccat
tttgttgtttagatttgagcgggcgaaatttctgtacaaaccaaaatatg
gcttcgttggaataccagttgaaacacttgtgagctgggggttggaataa
gcgtagtcaggcagctgaggtcacataaaaaagtgcagtagctacaaagt
tttcaatagatacgacctttctgaacacaaaatcatcaaccggacagttt
gaaaataattaccggacacgtccgaaaatatttttgtatttgatgacgtc
acaagcaaaatgaaaatttttatgaactAAAGCATAGACATAatatatac
caatcgacgcgttttttgacgtagattaagaaaaaggtcagtaaccatgt
ctgaaaatttgataataaaaagttacaagcttccgaagttttgatgacgt
catatttacactttctttaggatcgattttctcgagttaggttgAGAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttttatagcaaaattttcagatatggttactgaccattttcttaatc
tacgttaaaaaacgcttcgatcggtatataatatgtctatgttggttctc
aaattttttttcagttagcctatgggcacgcatgacgtcatcaggtaaTG
AAATATTaccggacacgtccggtaaGTAATTTCAACAACTCTCCGGTTGA
TCgtttctagatatttaggttgtatattttcaattaaaagtggtttggga
ttgttcgcaccccgtccaatttttttgtgacctcagctgcCTGTCTGGGG
GGGGGGGGggggttggaaaaaatctcaaaacttaataagttcatttgcca
ggatatGCCTGACTGTGGgtggaaagtttttgaaaaggaggctaatacag
cagaattgggacaaaaaaagggaactttcaaaaaacattttcccaaaact
gaataagcggggggttggaataagaatgtcctgggtggaaaattttcaaa
aaagtaattaACGGGGGGGgctaggtacccgagagtagaggGGAAaatgt
tccactacggatttttttcatatttcgatttaaaagcctactctgtgcgg
aagagaaattgtgtattttttctaatacgccgttcattaactcaaatcaa
atgactttggaggttcagtgaaagGGTGGcgaaattgccgtcccatgtga
aaaataatttcagaatCAAAAAAGGGCAACAATTGGAACACTGATTTTTT
TAACACCCATATGCAATTTCACACGTTTTCACGTTACCGTTGCAGTTGCT
GTTGTGACTGCGGAAACTCTCTAATGGGTGAATTGAGACCACGCAAAAAT
TGGTCTTTCGCATGATCAGGTCAGGTGTAGCAGATCTAAGTTGACCAACG
TAATCTTGTATAGTTTCATTGGAGATCTGTGGAGATTTGTACAATAGACA
AAAGTGTCATTCGATGTACGCTTGGATTTGCTTGCTTTGTTACAATTGAC
TCTATCTCCTGGAGTAGTTTGTCCTCGTCAACGTAGAAGATGTCAGGGAT
GATCAACAAGACTTTTTTTTGGACCGTCCCTTTACAGCAATTGTACAGTT
GTGCAAGGATTTGCTTACCAACAAGTGCGGTAATCTGCTTACCAATTAGT
GCGGTAATCTGCTTGAAGACTGATCAGTCAatcaggaattttcgaaattg
GGGTTTTGTCATAACACTATTCACTACCGGAATCTTAGCAGATGGGGCCT
TGATGGTTGCCACGATTTGCCACAAGGTTGAGGTGTTTTGGATCAGATTT
ACAGTGGTGCAATTGTTATTCCAATTTCTCATAAGGTCTCTTTCGTTAAA
TCCTTTAATCATTATCATTGTCTCTGATATGCGTGCGTCTGTGAAAAGTT
TGGCATAGTATAGTAGGTTTTGCTTCCTTTTTTGGGATTTCTGCCTCATT
GTCATTAAAGAATTGCTCGCAGGTTTGTTCTGCCTGCAGTGCCATATTGA
AATTGAGTTGACATAAGAATAAATTGTACGTTATAAAGCCAATCAGGGCC
AGCCAATATATTGTTGTGTTTATTATGCTAGAAGCAGCCCTCGAAtttca
ggtcggcattcggcagTGCCGACCTAAAAGCCGACCAAAGAGTGCGTATG
GTCGGCAGTTCATTGCCGACCATATTCATTGATTCTCTCGGCAGCCGACC
ATAAGTTATCTTTTAGGTCAGAAAAGCCGACCTGTAACTGTAAAATGAAA
GTCTCTAATAAGAACCATATCgcactcaaataaaaaaacaaacattgccg
tagcctttaaacaactttgccgacctaaaTTATAGCTCAGATCGGCATTG
CCGACCTAAAAACAAGcttaggtcggcaaaattttgccgaccttCGGCCG
GATTTGGACGGCACTTACGTGCCGACTTACTTTTACTTGAATTTCGAGGG
CtgtataagaacaaaaaatgaAGTAACTAAATGATACGGACTTTATGCTG
GATAGATAAATATTGGGGTGAACCTGAAGTATGTGAACTATTGAAATGAC
AATCACGTGCCTGATAAAAATTTTGGAAGTGAAGGAAGAGGGTAGGATTG
AATATCATTGAACTAATTGAACTCTTTGCCGACAGAACTAAATTGAACTC
ATACTGCTTTGAAAATTGTGAGTGCTCAATTAgtgtttgattatttttta
aatcaaacttaAATCCTTCAATGGCATTCAATTGGTTTGATAGTTGTTCG
GGAGAACCTGACAGTCTTTTGACTAACTAAgtactccagcataaatttTG
TTCATGATATCATCATTTAATTGATTTATCTTTTACAGCATAGCTGTAAC
CTagggacaagataatttatcccaCTTGTGCTGGCTGTGGGAAAGTATGT
GTGCTGGAGTAATTTGTTTCTCAATAGACCGTCGGGTTCTCCTAaacaat
tattattatttttcgatCCGTATGACAAGTTGGATTGATCAGGTCTGGAA
TAAAGGGacataaattttcaaacttcaaattttttttctatcagCAGGCC
TCCATTTTTACAATAGGGGGCATTTAAAAAAGAGTATGGTATGCTCATCT
TGGCTTAGTAAGAATTCAACAATTACGTCAAACAAACCCTGAATTAGCAG
ATTAGGAAATTTATATTGTAAAAAGTGCATGTGAAATACATttatctttt
tggacctacctccgggtgccccggtggaggtcctataaattaacccatgt
ccgttcgttcgttcgttcgttcgttcgtctgtccgtctgttaccagctNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
ttttccattctgaattgttgtacaattattgtcacttttttcttattttc
atctgatgttaatcattaggtaggtccattcagcatgttgcttgtttttt
ttaaattaaatatgTGTTTGAACTACCTTAATGCCCTTAATATTCGCGCA
CCTTTTATTTTCGAGCCCTTTAATTTTCATGCCTTTAATTTTTGCGCACC
CCTTAAAAACAACCTTTCGCGCACCCTTTAATTTTCGCACACccctatta
ttatcaattttcgCGCATCCTAAAATTAGTTTCTCTTTacatattttaca
tatttttttctggctgttttctagtcaaatcctcataaaaaagtctccaa
aaggcggacactctaATTAGCAGACACTAATCTGTTTCCCcaatggtgtc
cgctaattagaggctcCACTGTACTATGAATaacatatttttataaaaaa
tcatgATTAATTACGAGACACAAGTTATATTGCTTcttttatgactttct
tgagtatcttgtttaaaagtatatcataaatacaaaaggatctaaattga
ttttcttttgaaaaagccATAACTGACTAAAAATTCCTTATTtgctaata
gacgatatcggcttaacatgaaaactcagatttgatccccgagaattacc
cacaatgctttgcgcggaaaatatttcactgcaaacttttttccgtgcaa
agcattgtggggaattctcggggatcaaatctgagttttcatgttaagcc
gatatcgtctattcgtGCACCTTTTAATTTTTGCGTGGCTTAGTGCGCGA
AAATAGGCCTTTATCCCGCACTCTTTAATTTCCGCGCAGTGGTAGTGCGC
AAGAATTAAGGGCATTAAGGTATATATAAAGTGTGTTCATGAACATTTGG
GAACATCAAAAGACTGttccattttattttgtattcCCAATCACTTGTAG
TGACACATGATTTCTAGCCATTCAGAGATCTCATATTTGACATGGTTGGA
TTTTCTTGTTCAAAATTGTGTATATTTTTGGACTAAGAATCAGAAATATT
ATTTTACTTTACCAACCATTCAAGCTATATTTTCATGCTCTCTGAAAAGC
agactttgaaaattcaaattgcGATAAAAAGAGAACAGGTTGGGTTAGGC
CCTGAAATGTTCACTGATTTCTCATATCACTGATAGAAACAAAATATGTG
TCCCTGCAAGCAATTTGGAGCACATTGAAAATGGGCCGATCCTAAAAAAG
CCGAACTTTTGGCCGATATGGACCGGTCTGGACCGTTCCTGGCCGAATTT
GGCCGATCTTGGCCAATCTAGGCCGATCTTAGCTGAGccatgtttctaaa
tcttttctctaAACAAAGGCCGATCTAGACCGGTCCAAATCGGCCAAATT
CGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCtaaaaactttcgaatctttttgtaaagtgTTCGAATGA
ACTCCAGAGAacgtttgaatgttttgaaaattgttcgatcaaattattaa
aaaagttttccaattgttttgaaaagtctctgactctaaaatcaaaacaa
aagcaaaagtaAAAGAACCACAACAGAAGCAAGAAGAAggaagtattttc
atttttttgttttcatttcacTAAAACCATCACGAGAGAATAATTTTTCA
TGAGCTAATAGATTACTGGTATTATTGGAATATCAGCAAAGGAAAGGCAA
GTAACAGTTTCCTTTTCAGAGATTGTGCTGTTGTTAGTTAAAAGAAACAA
TTGGTATTCCTTTTGGTTTTGGTATTACTTTACTAGCTGTGTATGAGAta
cgaagaaaaatattgatatgCAAGTTTTATCAGGGGAGATATGTAAATGA
TACAGGGATGTCTAAATAAACTAACAAAGGGACGCAGTGCAATTCTATTC
TAAGGAGGATTTCTAACAATCTTTTCTAAATGGATTCATAAGAGCGAGTG
AGTCAAGGTTATGATATACAAGGGAGATGTGATTTACGACGAAAATGCTG
TTTGAactgtttgaaaacaattttgcttaTAATTAGTATTTCGGCTTCCA
TAAAACATTCTGGACCGGTTTGTATCGGCCTGGACCGGTCCATATCGGCC
TAGACCGGTCTTACATTGGCCGAAcatcattatttttgttttatcaggTT
TGTAACTTGCCAAAACCAGACCTGGCCGTTATAGGCCGATCCAGACCGGA
CTTGGCCGATCCGAACCGGACCAGGCCGATTTGGGCCGTAGAATTACTTG
GCCGATCCTGGCCGATCTTTAAtgtgctctaaatcgcttgcagGGACACA
TATATAAACATCAGCAAATTCTGAGAAATTCACCTGATCTTAGTCTGATT
GTTACAGACAGTGGCTCTTGATTGAACTCACTTTGGGTAGTTCTTACAct
ctttttattataagcatatgGCATATGGGAAAATCAGGTCGAGGCTTAAt
aatatgcttagcaaaatgtcatttttcaggCTTATTAATTTatgcttttt
tgattttctttaggttcatgaaaatttgaaacttttaagTTGGAACATTG
ATTCAGCTCAAAGTatgcaagtttttttttgtaatttgatgCTGCAGGCA
AAAGTCTtacgtaaaattttgaaaattttactcatcttcagcaaaaattt
caaggaaaaataATTATGGAAATTGCAAGCCcagcaattatgttaaagaa
cagccttttatctttcagaatcttcaaacagaatcgaaATATCTCTATTA
GCTCGACTGTAATAGACTTTTTTGTAAACCAAATATTtaggcttttttcc
gacaggtggaaattttgtgatgacgtcatcagtttttgaatgacgtcatc
aaatttttttttcatccttggaaattgtatcatgatcatgatggagaaca
tctgtactaaatttcatggccatagctcttctagatcgaaaataatcaag
ggttgtagattctacccccccccccccccccggggNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
ccccccccccctctgggggtacaaaagtcaaaaaagcttggggctaatag
ggttaaatgtaaccctaaaaaggtcagcgttttagaaaagctgcacaaat
ttttttgcatttcagcttggaTGTATCCTTAGCATTATTATGACAattat
gtatattttttaccgaatttgagcctaagtatacttatataagcgttatg
cttataaaaagaagagTGTATCTGACGGTTTTTAATTTGTAGCACCAGAA
CTTACAAGTGACTTCTATTAACTGTTATTattatgaatttattttgtgaA
GAAGGTGTTCCCTTCCCTGTCATCATCTGCCCCAAGTTGATattttccca
aaatattttcagcctGGTCAACTTTGTGTGCTTTCAGTTAACTTCATACA
AATTTCCATACCATACAGTCAATtattatataaataaaaattggaTCTTT
TGCGTTGACATTTGCTATGATTACACAACGTGAAAATACCCAATGTAAGG
TTAATTTATCTCCACAGTaattaacttttaaaaaatagaCTTTTCTCAag
taaaaacatttgaaaaataggTAGAATAAAGCTCTATTTTTAGCTTAGGT
TGCCCTTTAGGGGGCTTTTGGTCAACTTGATTCCACCCTTAATATCTCAT
ACAAACTGACTGTGCCAGACATTTGCTCGtttaatatggaaatatttcac
tcttTCTGGCTGGATTTTTCGGAGcagaaaaatctcggaacttgtaaaat
atttctcatattgtactagcaactgtccgataactattaatttttgttat
tgAACTATTCAAAACTTACAAAAATAGTATTGCCAACCTGGGTTTCAGCA
TGGCATAAAATGAAGTAAAGCAAGTCTTGACAAGACATCAATCATTCTGT
CAGTCATTCTGTATACTTTCATCGTTTAAAGTCTTTGAGATCAAATCTAG
AATCACATTCAAATTCCAAATAGCTTATAGCTAGACTCAACAATTCTTGA
TTGTACATCTGATTTTGCTTTGACAAGTAGAAAAGAAAGACAATTTACAC
CATCTGATTCGACCTATGTCTTTCTGAAGATCCAAATAATCTTTGAATAG
AAATCGaagccaaaatttttgaagcttttggtagaatgtcttcttttggc
aattttttttgactgttcAGAAATGAACAGTCATTACTATTGCGTAGTTT
TCATTATATATTGTTGCGGACAAATGTTCTTTTAAGTAAAATCCTCAATT
ATCTAAACTGGGcttagaaaaattgaataaaatcaaaactcACTCAATCA
ATTGATTTTCATTTCTCAAGATTATTGAATAGATTTTGGATATCGAAATA
TTATGTATAGTtataaaatttcacaaaaatcatggggattttactttata
taaaaattagTTTCCACTTTTTTGTGACATACTGTACATAATTGAGGGTT
GATATAAAtccaaaaaccaacaaaaatcTGTTGAGTATCATGTTTTATCC
TACACCCAGAAGCATGTTAAAATGACTCTCTCTGATAAGAACagtaaaaa
tatcaagaaaattgTCTTTTGAGAAACAAGGTTTATGAGacattattcaa
tggctgtttttgcctacaggtatagaATAATAACAATATTATTATATGGC
TTTAATTGTGGCCAATTATTGTAGAAAATTCTTAATTGACCAAATAATGG
TTTTAATTTGTCTCGTTTTAGAAGATAAAATGGAAGGCGATAAATTACCT
GATAGTTTTGATGTAGTGATCATTGGAACAGGGTTAGGTGAGGCTATTGT
AGCTGCGTCTTTATCAAGNCCAACCTGGGTTTCAGCATGGCATAAAATGA
AGTAAAGCAAGTCTTGACAAGACATCAATCATTCTGTCAGTCATTCTGTA
TACTTTCATCGTTTAAAGTCTTTGAGATCAAATCTAGAATCACATTCAAA
TTCCAAATAGCTTATAGCTAGACTCAACAATTCTTGATTGTACATCTGAT
TTTGCTTTGACAAGTAGAAAAGAAAGACAATTTACACCATCTGATTCGAC
CTATGTCTTTCTGAAGATCCAAATAATCTTTGAATAGAAATCGaagccaa
aatttttgaagcttttggtagaatgtcttcttttggcaattttttttgac
tgttcAGAAATGAACAGTCATTACTATTGCGTAGTTTTCATTATATATTG
TTGCAGACAAATGTTCTTTTAAGTAAAATCCTCAATTATCTAAACTGGGc
ttagaaaaattgaataaaatcaaaactcACTCAATCAATTGATTTTCATT
TCTCAAGATTATTGAATAGATTTTGGATATCGAAATATTATGTATAGTta
taaaatttcacaaaaatcatggggattttactttatataaaaattagTTT
CCACTTTTTTGTGACATACTGTACATAATTGAGGGTTGATATAAAtccaa
aaaccaacaaaaatcTGTTGAGTATCATGTTTTATCCTACACCCAGAAGC
ATGTTAAAATGACTCTCTCTGATAAGAACagtaaaaatatcaagaaaatt
gtttttgcctacaggtatagaATAATAACAATATTATTACATGGCTTTAA
TTGTGGCCAATTATTGTAGAAAAATTCTTAATTGACCAAATAATGGTTTT
AATTTGTCTCGTTTTAGAAGACAAAATGGAAGGCGATAAATTACCTGATA
GTTTTGATGTAGTGATCATTGGAACAGGGTTAGGTGAGGCTATTGTAGCT
GCGTCTTTATCAAGGATTGGAAAAAGTGTACTTCATATCGACCGAAATGA
TTATTATGGTTCCCATTGGGCTACCTTCAACTTTGATTCCATTTTGAAAT
GGGCAGACTGTTATCAGAAATGCAACGAAGAAGAAATATCAGATGAAAAT
GATAAAGTCCCTTCTCACGACTCTGCTATTTCAAACATTGAAATCAGGTC
TTTTATTCCTGAAACATCTCAAGTAAATGATATAGCTAAAAGCGAGGAGA
CTTCTTCTGAGAAAGACTCAAGTGCTGCTTCAGATTCTGAGAAAGAAGAT
GTTCCTTCAAACGATAAAAACACACCAGCAGAGGCTAACTGTGAAAATGA
AAGCACAGAACAACCAAGTATAAATCAAGAAGCGGTTACTGATAACAGTG
AAGGAGTTGAACCACAAGAGGATGAACAACAGAAATCTGAAGAAAAACCT
AAGCCAAGTTTCTTCAATCCACCAAAACAATCTACCATTGTTAGCCAGgc
taaaatcaaacaaaaatctcCTGACATTTCATTAGAAGATTTCAATGCTT
TATCCAGAAGATTCAATTTAGATGTGAAtccaaagtttcttttttctgCT
GGTCCGCTAGTCAATGCTATCATTAAAGCCAACATTTCCCATTATTCAGA
ATTCCAAGTTGTAAACCGAATTTTGACATGCAAGAACGACAGTATCATTG
AAGTACCTTGTAATCGAAGTGATATTTTCAGTAGTTCCTTTCTATCAATG
ATAGAGAAAAGAACCCTTATGAAATTTCTTACACTTTGTCTTGAGTTTGA
TGCAGATTCACCGAGCGAAGATGTGAAAGAGTACCAGGAGAAATCTTTTG
TGGAATTTCTTCAATCTAGAAGGTTGAGTGAAAACCTTCAAAAGTTCATC
ATCTTTTCAATAGCAATGGTCAAGCCAAACACCTCGACACTCGAAGGTCT
CAAAGAAACTTGTTCATTCCTAAAATCACTTGGTCGCTATGGCAAATCCC
CCTTTATTTGGCCTCTGTATGGTGTGGGCGAACTACCACAGGCTTTCTGC
CGAATGAGTGCTGTCTTTGGCGCACTTTATTGCTTGGGGAAATCACCTGT
TGAACTCAAAATCGAGGAGAACAAATGTACACATGTAGTGCTGGAGAATC
AAACCATTAAGTGTGCTCATGTTGTTATGAACCGTAGCTTTTTACCTCAA
TCTTATCTGAATCCATCAGTTAGCAGGAACAAAGTTTCAAAAGCCATTCT
CATAACGAACGGATCAATATTGCCATCAGAGACTGAGTTTATATCCTTCC
TAACTATACCTCCATTAGCTGGTAAAGAAGAACTAGTACGTGTTATAGAG
TTAGGACCCTCTGCTGCTGCTTGCCCCGCTGGTCTTTATGTTTTGTATTT
GACATGTAAGTCCACTGGTAAAGCTTTGCAAGATTTGAAAGATTATGTTC
ACTTATTGACAGAAACACAAAGTGATGATAAACCAAAGTTATTATGGTCC
ATTTATTTCAATGAGCTAGCGGATAATAATGATGTGGTTGACTTACCAGA
AAACCTTTCAGTGACAACAATGCCAGGGTCTTCTTTAGGTTTCAAAGACG
TTGTTGAGAATGCAGAGATGATTTCGAAGAGGATTTTCCCTGATGGTGAA
TTCTTGATGACAGTGCCCAATGCGGAAGACATCGTTTGGGACACAGATAA
AACCCAAGAGGAGAAGAATGAGGAGGGGAATGAAAACAACGGAACAACGG
AAGAAGAAAAGCAAAATGAACAAGATCTCGAGCTTTCCCAAGTTGAACAG
GGGAAAAAGGAAGTAGAAAAAGATGGCGACAAAACAACGTAATGTCATTC
CATAAGGAAAagcttctttttatatatatgatttattcgaatttttgtat
tttaaattaaacttttgaatataatagaatattttttcgttttatttgGA
TAAGCATACAAATAGCTTTTACTTTAACTTTAGCGCTTTAGAGAATCTCT
TATTGAATGAATATCTTCCACTAGTGAAATGTTTAGCACTCAACTCGTCG
TGAACGATTTACCTCTTCTCTCTATAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019885-exon-sc0000339-1491911889:240382..240544 | TCONS_00019885-exon-sc0000339-1491911889:240382..240544 | Clytia hemisphaerica | exon |
| TCONS_00019885-exon-sc0000339-1510915933:240382..240544 | TCONS_00019885-exon-sc0000339-1510915933:240382..240544 | Clytia hemisphaerica | exon |
| TCONS_00019885-exon-sc0000339-1575043694:240382..240544 | TCONS_00019885-exon-sc0000339-1575043694:240382..240544 | Clytia hemisphaerica | exon |
| TCONS_00019885-exon-sc0000339-1491911889:253599..255763 | TCONS_00019885-exon-sc0000339-1491911889:253599..255763 | Clytia hemisphaerica | exon |
| TCONS_00019885-exon-sc0000339-1510915933:253599..255763 | TCONS_00019885-exon-sc0000339-1510915933:253599..255763 | Clytia hemisphaerica | exon |
| TCONS_00019885-exon-sc0000339-1575043694:253599..255763 | TCONS_00019885-exon-sc0000339-1575043694:253599..255763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:240382..255763 + |
Blast
BLAST of TCONS_00019885 vs. Swiss-Prot (Human)
Match: RAE1 (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3) HSP 1 Score: 364.385 bits (934), Expect = 2.657e-114 Identity = 221/626 (35.30%), Postives = 358/626 (57.19%), Query Frame = 1
Query: 178 GDKLPDSFDVVIIGTGLGEAIVAASLSRIGKSVLHIDRNDYYGSHWATFNFDSILKWADCYQKCNEEEISD---------ENDK---VPSHDSAISNIEIRSFIPETSQVNDIXXXXXXXXXXXXXXXXXXXXXX----VPSNDKNTPAEANCENESTEQPSINQEAVTDNSEGVEPQEDEQQKSEEK---PKPSFFNPPKQSTIVSQAKIKQKSPDISLEDFNALSRRFNLDVNPKFLFSAGPLVNAIIKANISHYSEFQVVNRILTCKNDSIIEVPCNRSDIFSSSFLSMIEKRTLMKFLTLCLEFDADSPSEDVKEYQEKSFVEFLQSRRLSENLQKFIIFSIAMVKPN-TSTLEGLKETCSFLKSLGRYGKSPFIWPLYGVGELPQAFCRMSAVFGALYCLGKSPVELKI--EENKCTHVVLE-NQTIKCAHVVMNRSFLPQSYLNPSVSRNKVSKAILITNGSILPSET-EFISFLTIPPLAGKEELVRVIELGPSAAACPAGLYVLYLTCKSTGKALQDLKD--------YVHLLTETQSDDKPKLLWSIYFNELADNNDVV-----DLPENLSVTTMPGSSLGFKDVVENAEMISKRIFPDGEFLMTVPNAEDIVWDTD 1944
D LP FDV++IGTGL E+I+AA+ SR G+ VLH+D YYG +WA+F+F +L W YQ+ N + +SD EN++ + D I ++E+ + + D+ ++ +++S + +P+ D++ + +CE + + PS + E + + G E +++ ++K P S + + I + K I+ RRFN+D+ K L+S G L++ +IK+N+S Y+EF+ + RIL + + +VPC+R+D+F+S L+M+EKR LMKFLT C+E++ P E K Y+E +F E+L++++L+ NLQ ++ SIAM +ST++GLK T +FL LGRYG +PF++PLYG GELPQ FCRM AVFG +YCL S L + E KC ++ + Q I H ++ S+ P++ + V ++S+A+LIT+ S+L +++ + IS LT+P VRVIEL S C G Y+++LTC S+ A +DL+ Y + E + +KP++LW++YFN + D++D+ DLP N+ V + P LG + V+ AE + + I P+ +F PN EDI+ D D
Sbjct: 2 ADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE-NSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYASQDLH-EDVEEAGALQKNHALVTSANSTEAADSAFLPTEDESL-STMSCEMLTEQTPSSDPENALEVN-GAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEYEK-YPDE-YKGYEEITFYEYLKTQKLTPNLQYIVMHSIAMTSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPEN-MCSRVQYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSKTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWALYFN-MRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPNPEDIILDGD 619
The following BLAST results are available for this feature:
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