TCONS_00019833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019833
Unique NameTCONS_00019833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019833 ID=TCONS_00019833|Name=TCONS_00019833|organism=Clytia hemisphaerica|type=transcript|length=550bp
TGCATGTATATTGGTCGTACTGTGATGAGCTTTGTGACTGGGTATATGAC
GGATAGCATTGGGCATCGTGCGACGTTAATGATCTTATGTACTGGCATCA
CCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTATGAATGGGCTATC
GTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCATACATTACTGTTAA
GGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAGTGACGCAATCA
CATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAGGGCAAACTTTA
GGAGCATTTACAAGCTTTCCAGCTGAACAATATCCAAGTGTTTTTCCAAA
AGATTCCATTTTCGGTCATTATAAAATCTTGATACCAAATATGGTCATTG
CACTTGGAATGTTAATGACAACCATATCTATTTGGAACATCATTTATTCA
AAATCGAAACAGAGAGAAATTctcgaaaagaaaaatgtattgTTGCAGCA
GGAAAAAGACTCTCGAAGTGACGAATCATTGGTAGTTAGATACATCAAGC
Run BLAST on NCBI

transcript from alignment at sc0000338:263046..268438+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019833 ID=TCONS_00019833|Name=TCONS_00019833|organism=Clytia hemisphaerica|type=transcript|length=5393bp|location=Sequence derived from alignment at sc0000338:263046..268438+ (Clytia hemisphaerica)
TGCATGTATATTGGTCGTACTGTGATGAGGTAAGGACTGTTTCTCCGTGA
AAAAATGTATAAGAACAAATATGACTAAAATATtaaacatccctgtctca
tagccccagtggaactttttttttctgtGGGGATAAGCGATAATGGGGAT
AAAAGCTCTATTGCTCCatccaaggttaaaaaaactcagtggggatggtt
tcggAGTGCAacttttaaacatggaatttcgagtgaGAATACAATCagag
tcaatttcccagtggggctgaaattcaagggtattttcccaccggggacg
agaaaattttgctcaattttccagtggggctggggtcccgcaaacttttt
ttccgtcagcgaacgcagacctgatttagcggtcgaagacctgaattaac
ggccgaagacctgatttaACGGCCGAACCTGATTTAACAAGTCACCGGTC
GAATACCTGATAGATAAGTTAGGGTCAGTTAAACTAGTTAAAGTAGCTTG
AACCACTCGGCAAGGCATCAGTGGCGATGGCCCAGTGCGTGGTTAGTGCA
GTGATATCGAAGACGAAAGATGGGTGGTATCGAAGACGAAAGATAGGTAG
TTCGAGACGAGTTATTGGcattaattttcattctttttaatttaaaatct
tttaatttaatttgttttcaatactatttcccattgaaacatcatataaa
aatcttgattgaatTTATAAAAGAGATTTATAGCAAATTTCCACAATTCA
TTTTctccaggtcttcggccgttaaaaAAGTATTCGACCACTGCACCAAG
TCTTCGGtttttaattcaggtcttcggtcgctaaatcaggtctgcgACCG
CTAATTCAGGTCTGCGTCCGCTGacgaaacaaaaatctgctggggtccca
gcgggtctatgacacaggggtgttattaaCAATAAAATGAGAGCATTTTG
AGGTTTCGTAAGATTTGAAACATCCAATTCTTAGAAAATTGCTcagaaat
actcaaaaaaggtgaaaagAGAGCATTTTAAAaataggcttaaaactcaa
aagtgaagaacatcagaaggctttaaaaattgatgttcttataaaagaaa
ttgcATGCTATCATGCTTTTCTTTCAAACTTTAGCTTTGTGACTGGGTAT
ATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATCTTATGTACTGG
CATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTATGAATGGG
CTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCATACATTACT
GTTAAGGTGAATATTGTGTTTCAACCCTGTCCCTCACGGgagggacctaa
ttgccggggggttggaattactgctgaaaatccaaaaataaggtaaatat
aggctaaaatcaggatATTTCGAGCGAAATAAGGGACCTTCTTTTTGACg
gctaaaaatattcttagaaaTTAATAAGctgggggggggtcctaataagg
tccggtgGGGGTCGGAAAATTTTCAAGCAATTAATAAGCGGGAGGCCCCT
TTATTTCGAACCTAAGAGTGCAAAACTTTGAACTGGTCGTATACACTTTA
GGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAGTGACGCAATCA
CATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAGGGCAAACTTTA
GGAGGTAAAGATACTGTTTTAACTTTAactttcaaagactttaaaCTATG
ATAAAAGCTTTTAACTTGAAAGTTAGACAATAGCTTTGGTTCCATTAGAA
agacatttttaaatttttcaatctttttaatCAAGTGGTCTTGAATTATA
GCCTTAAGTCTGGGACTTGATATATTGGCTGATTTTGAATGTACATACAC
GTCATTTAGGTCAAATAGaccctttaaaaatatttttggtgctGAAGACA
ATTACTATTGCCCTTCAATTATGATTTTTAGTCATTATTGGCGGTTCGGA
GtaatttgaaagaaagaaatctatgtttagatttagatttattCGTCtgg
taaaaatgaaattttccttgtaaattcattaaCAGTTCGCTCAAAGGCCG
ACTGCACTATCAAATAaacagattttaaacccatttttAAGAGCACCGTA
AAAACATTTAAACcttaaaacttcaaaaaattaagaacagctcagcctga
gccaaaatttactggttcttataacaAAAGTAAGTATATTACATTTTCAC
TTTCATAGTTTCGATATgtctttttttgtcttttagCATTTACAAGCTTT
CCAGCTGAACAATATCCAAGTGTTTTTCCAAAAGGTAATCTCTGAATTTT
CATTTCGATGGACTTTGGACTTGTTCCAAAAAGAGCGAGTAATCAAAATT
CTGACTAAATATATCAAAGTCCAGTTCTGAAAGTTCAAAACACGGATTGT
CTTTAAGAGAGATACATATCTGAGGCTCCAGCCGTAATGGGTGGTAGATG
GAGAAAAACAGCGGTAAAGTTTGGAAGAAGCTGTAAAAAACTCAGGAGCT
GTTTACTCCACCCCAGGGTTGATCTACCTCCTAAATTATTCCCCCTTTTT
AGTGACCTTGCGTagagacgataggatcgtcaaCCTTTTCAAATATCATT
TCGGttattcccagctggcacacaacgttgtttatggacgttgtgaatgt
cagaaaaacgttgaaacgcTGGGTTCATATTCTCtgttttttgtctattt
tgttCAGATTCCATTTTCGGTCATTATAAAATCTTGATACCAAATATGGT
CATTGCACTTGGAATGTTAATGACAACCATATCTATTTGGAACATCATTT
ATTCAAAATCGAAACAGAGAGAAATGTAAGTTCATGAAACTGTGACTTTG
CGTAATGTCGACAAACGTTGTCTAATTTcgtcatagcaactatctggtct
gcaaagtagTTAGAGTACTAATCTTTTTAAACAGCTCACTTCAGaatgtt
ttatttataaacatttaaaagactAGATAGTTGCTATGGTGGAATTATAC
AGGATACTATAGTTATATGGGTGTttaagcatagtataagaaagccgcgg
ctggaatgataacatctgaatttctgttgttctatctctgtcgtatttga
tgactatttgttgatcaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgaaatctttttagaaatcaatgaaatagtacatcaagataatact
gtgaaaatttcaagccagcaccttcaaaatttatcattcaaactgacagg
aaagttgtgaTCGTGAATatatttcttataattttaattttggcgataga
ctatcgtttccacaaaatacccctaaaatatgtctaAAATCAGTTCAAGT
TTTCTATTGTACAGATTCAAAAatatctagcaataaaaaaccttttgtga
aggaaaataagaaaaaatttcaaaaactatctaccaataataaactgaca
atcttgatgttcttataaagctcggagacagagatagaacagcaattaac
tgaaaagacaatgcagtacatattccagccgcggctttcttatactatgg
tttaAGGTtatacgataattgttacgggaaAATATCATTTGTATAACGTA
CAATTGGTCctttccattattttttgcttaattAAACATCAAATTGGACT
TTGTTAGTGTAAATTTAAGTATGTTAGGGGATTCGCTGCATCGAAAGGGG
GTTTAAAGGAATTTTCATTTGCGTGTCCAATTTCCGTCGTTTGGTCAACG
AATATGCCAGTCTTAAATCCTATTATATCTAACCCACAGActtttatata
ccctggaccaagctatatccatcATTCTTTGACCGGAGTTTTCTTTAAAG
TGCAGCTGTTAATAATTAATGTTTAACGGCGctaaatcatcaaaagtatt
gaggaaaagtagatctagcgctctcgatgcatttacaccgctattgagta
gtactactattagggtaccactttcaaaaaaattccgaTGACCAGGATTG
AGAAACTTAGTCCATAGTATATAAAGATCAGTGATCTAACCTTCCCATTA
AGATTGAGAAATGGAATCACGCTAACTATAATTTCGATTCTTGGGCGctt
ccaaaaaatttgaatatggaggCTGGAGGatataaatttttatcccctta
cattgtgacttttgaccccctcCCCAGACAACATGTCTCACCCcttggac
aagcatcagttgaacCCCGGACACTCGAAATTGTCCCTaaaacagagcaa
gtttgcccCTAAGTCAATTTctgcagatttttcactactcCCACTACATA
TCCAATATATTCTCCAATAGCAGGGGCTCTTTCAGAAAATTTTCgtaaag
agggggggggggctttacgaaatttttttggaagagctcctgctaaaaat
aggctaaaaatattattttctgtATATACAGTTGCTCCTAAAGAGTTGGG
ACTTTCCAAATATTTGATATTCCCTCCCTCTTGCCGTACACCCAGTGAAC
AATAGTAATGACACCATTCAAACAATATACTGGCTAAACTCCATTCTCct
ccttcactgcgtacgttcTAAATGGATGGCGGCTTCTTCCAAAACATCAT
ATTTTCTTTTCAGTctcgaaaagaaaaatgtattgTTGCAGCAGGAAAAA
GACTCTCGAAGTGACGAATCATTGGTAGTTAGATACATCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011154XLOC_011154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019833-exon-sc0000338-1491911889:263046..263074TCONS_00019833-exon-sc0000338-1491911889:263046..263074Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1510915933:263046..263074TCONS_00019833-exon-sc0000338-1510915933:263046..263074Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1575043694:263046..263074TCONS_00019833-exon-sc0000338-1575043694:263046..263074Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1491911889:264180..264351TCONS_00019833-exon-sc0000338-1491911889:264180..264351Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1510915933:264180..264351TCONS_00019833-exon-sc0000338-1510915933:264180..264351Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1575043694:264180..264351TCONS_00019833-exon-sc0000338-1575043694:264180..264351Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1491911889:264647..264749TCONS_00019833-exon-sc0000338-1491911889:264647..264749Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1510915933:264647..264749TCONS_00019833-exon-sc0000338-1510915933:264647..264749Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1575043694:264647..264749TCONS_00019833-exon-sc0000338-1575043694:264647..264749Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1491911889:265332..265379TCONS_00019833-exon-sc0000338-1491911889:265332..265379Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1510915933:265332..265379TCONS_00019833-exon-sc0000338-1510915933:265332..265379Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1575043694:265332..265379TCONS_00019833-exon-sc0000338-1575043694:265332..265379Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1491911889:265803..265920TCONS_00019833-exon-sc0000338-1491911889:265803..265920Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1510915933:265803..265920TCONS_00019833-exon-sc0000338-1510915933:265803..265920Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1575043694:265803..265920TCONS_00019833-exon-sc0000338-1575043694:265803..265920Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1491911889:268359..268438TCONS_00019833-exon-sc0000338-1491911889:268359..268438Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1510915933:268359..268438TCONS_00019833-exon-sc0000338-1510915933:268359..268438Clytia hemisphaericaexon
TCONS_00019833-exon-sc0000338-1575043694:268359..268438TCONS_00019833-exon-sc0000338-1575043694:268359..268438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:263046..268438 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.764101	0	3.27548	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.03426	0	0	0	0	0	0	0	0.23758	0	2.59669	2.51203
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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