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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019751 ID=TCONS_00019751|Name=TCONS_00019751|organism=Clytia hemisphaerica|type=transcript|length=1754bpRun BLAST on NCBI protein sequence of TCONS_00019751-protein >TCONS_00019751-protein ID=TCONS_00019751-protein|Name=TCONS_00019751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp MIRRKLRSKSYIVTMGTKSPDLSPTNERRRNSFTHLIDKHIVSSYLKTTNRun BLAST on NCBI transcript from alignment at sc0000335:169293..219722- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019751 ID=TCONS_00019751|Name=TCONS_00019751|organism=Clytia hemisphaerica|type=transcript|length=50430bp|location=Sequence derived from alignment at sc0000335:169293..219722- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000335:169293..219722- >TCONS_00019751 ID=TCONS_00019751|Name=TCONS_00019751|organism=Clytia hemisphaerica|type=CDS|length=9774bp|location=Sequence derived from alignment at sc0000335:169293..219722- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019751 vs. Swiss-Prot (Human)
Match: EFCB9 (EF-hand calcium-binding domain-containing protein 9 OS=Homo sapiens GN=EFCAB9 PE=4 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 7.671e-41 Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = -1
Query: 1227 LQYIHLDKNYSLLSGRNLKVIYDFFTLLDVHGDNALNDVQFCAFLKSITDLTTTQIYKVFDMLDVDGSGSIDFNEFYLLICIVISVQDREEKHFIYRHSRTVFDLLDEDKSGNISAXXXXXXXXXXXLQGDSIREIFSEFDVSGDQNLDYTEFKMFAMECIDRQTK 1724
L Y++LDK Y LLS RN+K + ++F +LDVHG N LNDV F FL +TDL QI VFDMLD + G IDF +FY+L+C++++ Q+ E F+YRHSR VFDLLD I A+ FE + FLFN+Q ++++F +FD++GD L+Y EFK++ + D+ K
Sbjct: 9 LWYLYLDKIYCLLSVRNVKALAEYFHILDVHGKNTLNDVLFYHFLHHVTDLKKAQINIVFDMLDWNAVGEIDFEKFYMLVCMLLAHQNHLEGQFMYRHSRPVFDLLDLKGDLRIGAKNFEMYRFLFNIQKQELKDLFRDFDITGDNRLNYQEFKLYTIIYTDKLQK 174 The following BLAST results are available for this feature:
BLAST of TCONS_00019751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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