TCONS_00019675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019675
Unique NameTCONS_00019675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019675 ID=TCONS_00019675|Name=TCONS_00019675|organism=Clytia hemisphaerica|type=transcript|length=408bp
NNTAACATATTTTGACAACTGTGACATTACAAAAGatttgcaACCTATCA
AACGTGGTACTACAAAGAAATTGATCCCTTCAACTATCTTGATTCCAAGA
TTCGACAACTAACGTGTTGGTATCACCTAACGTTTCGGTATCATCTACGA
TTAAGCCCCCGTCGTGGATTGTTTACCCCCTATTCATTCAGCCAAAGCCA
TAGCCAAAGCCAAAGCCTTTTACTGCCTAATTTATTTAATTCATAATTTA
TTATAATTGTTTGATTATAAATTGAAATCTCTACGAAATTTCTGTTGCAT
TTTACATCCCTAATACACCGTTTAATAAGATGATATCTATCGAAGCTTAT
CGGATTTCGATCGGCAACTTTGATTCTACCAGGCAATTTAACCTTCGTTC
TATATATA
Run BLAST on NCBI

transcript from alignment at sc0000333:122501..127043-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019675 ID=TCONS_00019675|Name=TCONS_00019675|organism=Clytia hemisphaerica|type=transcript|length=4543bp|location=Sequence derived from alignment at sc0000333:122501..127043- (Clytia hemisphaerica)
NNTAACATATTTTGACAACTGTGACATTACAAAAGGTAAATTTAAAACTT
AATTTTTACTTACTGGTAACTTTGTAAAAGTATAACTGCTTTGGTGTGGC
AACAATTTTTACCTAGATACACTGCCACCAAGTTTTCAGAGCATGTCATG
GCTGCCCCCAAGGAAAAATTATAACATTAAAATCCTACCCCTAAAATCTG
TGAACCCACTCAAAAAAGCTTAAAAAGCCCGAAAAAGTGACAAAATAGGC
CAATTTTCAGTGATGTTGCCCTTGAGACTTTAAAATTATCAAACCCAGGG
GATGTCAATCGAAGTGACCGAAGTCGATCATAAGATGCTTTTTGTTCCAG
ACGGTACTAATCGAAGGACCCTCCCGGCGCTCCGGAAACATCCGGTGCAA
AAAGTGCCGTTTTTTTCGTGCACCGGAACTTTCCGGTGCTTCCGGTGGAA
GAATTCTCCGGATCGAGCTGCACCGGAACGTTCACGGTACGGTGCTTGGT
GCATGATTTCCGCGATATAAATCCGATAGCGCTCGCTGTGCTAATCATGT
AAAAAGTAACTATACGCACACACGAATAATCCAAACGATGTTCCCATGTG
TGATGCGGTCGTGGCTTCTTCATAACCTCGAAAGTCACATCCTGACTTGT
TTCGTATTTTCCAGTCTCTGATTTGATATTTTTCTGATGTTCTGGGACTT
TGTGAGTTAGGGGTCTTCGACAAAAAGCTTTCGAATTTTTTATCGGCATT
GGGCCGATAAGCTTCAGACCCCCTCCCCCCTTGCTCTTATCGGCCAAAAT
TTTTCAAAACCAACTTTTTACACCTTCGAAAACACAATTTTCTCCAATCA
TGTCCGCCATCGCGTTGATCTCGCCTTCCCACCTTCCCACCCGTCATCGT
TGAATTTTTGTCTATTTGCACCAACATTGAGTCTGTTCATACCCGCATTG
ATATTGGTAATCAAAACGAAAGTTAAAAAGACGCGATGAAATCGCAACAT
TTTGAAAGGAAACGGCAGCAGGCTGGCCAATGAAAAAAGAGTTTTTTTAT
CAAAGCTTATTCAAAACTGTACTGTACTTTTAAAGTTGCGAATTTGTGCG
CGATGGAGAAAGAAAGTGAAATTGTATGCTTTCAGTGGAGATTGTGGACG
AAATCAGAGAGAAATTGGCTGAAAAGATTTTCGTCCCAATACTTGTTTTT
TTATCGGTATGTAGTTGGACCCCCCCCACCCCCTTATCGGCCCAATGCCG
ATAAAAAATTCGAAAGTTTTTTGTCGACGATCCCTTATTTTCTATGTTTT
TCAACTTGTTGAATGCTTGTTGAATGACTTACCGAAAGATCACCACCGGT
GGGATTCGAACCCACTAAATGCAAAGTTCTGTTGATCAGAAACCCAATGC
CTTATCCACTGCGCCACGGATTCATGCCGGACTATANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCACCTGAGA
GTACACAGGTTCATGGTTGATCGAGACAAAAGCTGGTGTTTATTGTTTCT
CACTTATTTTTTCAGATTTGCAACCTATCAAACGTGGTACTACAAAGAAA
TTGATCCCTTCAACTATCTTGATTCCAAGTGAGTAGCAATGAGAAATACC
TTACATCAGATGATCGGCCGCAGCAACACAAGCTGAGTTTTTTCTTTACA
ACTGTTTACCTTATACAAGTGTCCGTGCGGCAAACTTAAAAGTACATATG
CGTTCGTTAGGTTTTGAATTCGAGACCTGATGATGTATCTCCATTTTCTA
GTTTGCCGTGCAGACACTTATATAGCTAACAGCCATACAGAAAAAAACTC
AGCATGCGTCACTGCGGCCGATCAGCTGATGTAAGGTATTTTTCATTATG
TAATTTCTGCTGGACTACATTATTATTTAACAGAACGTCCTTTTTGAAAA
AATATCTATTTTGTGACTATGTTTTGATAATAGCAGAGTCTGTTTCCAAT
GCCCATAATAGTGACTTAAGATTTAATCAATCTTTTGCTCAAATACACAA
TACTATCAATTTTTTCGTGAAATACTGCCATACTGTTAGAAAAAAAAAAG
CTTGGCCCTGGTACTAGCTCTTGGAGATCCCTTTTGAAATTTTGTATACC
TTTGCATTATGTGATTATGTTAACCCTTTGAGTGCCAGGGTCCTTTTTTC
TAAGTTTTTTTAAAAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCTC
CTGATCTAGAAGGAATTAGAAGCTCGTATATAGCTCGTTGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TAACGATTTCTAACTCAAACTGGGCATTACAGGAGGGCTTCGCCCTCCTA
TATAGCCCATGTCGTATATATACGACATCGGCACTTAAAGGGTTAAAAGT
CGCAAAGTTTCATGAGATTTAAAAAAAAATTAAGGGAATTATAAGCAAAA
AACTGACAGGGTGGTGTAAACCCCCCCCCCTCCGATATAAATACCAAATT
TTATTCAATTTATTACTCTTCCTTTATTTTTAGGATTCGACAACTAACGT
GTTGGTATCACCTAACGTTTCGGTATCATCTACGATTAAGCCCCCGTCGT
GGATTGTTTACCCCCTATTCATTCAGCCAAAGCCATAGCCAAAGCCAAAG
CCTTTTACTGCCTAATTTATTTAATTCATAATTTATTATAATTGTTTGAT
TATAAATTGAAATCTCTACGAAATTTCTGTTGCATTTTACATCCCTAATA
CACCGTTTAATAAGATGATATCTATCGAAGCTTATCGGATTTCGATCGGC
AACTTTGATTCTACCAGGCAATTTAACCTTCGTTCTATATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011075XLOC_011075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019675-exon-sc0000333-1575043694:127009..127043TCONS_00019675-exon-sc0000333-1575043694:127009..127043Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1575043694:125266..125328TCONS_00019675-exon-sc0000333-1575043694:125266..125328Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1575043694:122501..122810TCONS_00019675-exon-sc0000333-1575043694:122501..122810Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1510915933:127009..127043TCONS_00019675-exon-sc0000333-1510915933:127009..127043Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1510915933:125266..125328TCONS_00019675-exon-sc0000333-1510915933:125266..125328Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1510915933:122501..122810TCONS_00019675-exon-sc0000333-1510915933:122501..122810Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1491911889:127009..127043TCONS_00019675-exon-sc0000333-1491911889:127009..127043Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1491911889:125266..125328TCONS_00019675-exon-sc0000333-1491911889:125266..125328Clytia hemisphaericaexon
TCONS_00019675-exon-sc0000333-1491911889:122501..122810TCONS_00019675-exon-sc0000333-1491911889:122501..122810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:122501..127043 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.702268	0.869875	0	0.623397	0	0	4.16512	4.06602	8.56178	5.43524	8.89582	7.36534	7.07334	9.19341	1.93151	1.75733	2.77887	4.3867	1.8208	3.54422	8.5464	7.41876	4.99137	2.87158	2.95111	3.94443	18.3669	12.965	7.60659	7.49323
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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