TCONS_00019672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019672
Unique NameTCONS_00019672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019672 ID=TCONS_00019672|Name=TCONS_00019672|organism=Clytia hemisphaerica|type=transcript|length=1659bp
CGCAAAGTATATCCCTGACTAATTTATCcacttttcaaaacttttcttct
ttgataacaaATCTCAATCAACATGCGTGAATGTATCTCAGTCCATGTTG
GCCAAGCTGGAACCCAAATTGGTAATGCCTGCTGGGAATTGTACTGTTTG
GAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGACAAAACCATTGG
AGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAAACTGGTGCCGGTA
AACATGTCCCAAGAGCTGTTTTCATGGATTTAGAACCAACTGTTGTCGaT
GAAATCAGAACTGGAACATACCGTCAACTTTTCCACCCTGAACAACTGAT
CACTGGTAAAGAAGATGCTGCCAACAATTACGCTCGTGGCCATTACACTG
TTGGTAAAGAAATCATCGATCAAGTTTTGGACCGTACTAGAAAACTCGCT
GATCAATGCACTGGTCTTCAAGGATTTTTGATCTTCCACTCCTTCGGTGG
TGGCACCGGATCTGGATTCACCTCCTTGTTGATGGAACGTCTTTCTGTCG
ATTATGGAAAGAAGTCCAAATTAGAGTTTGCTGTCTACCCAGCTCCCCAA
ATCTCCACAGCTGTTGTTGAACCATACAATTCTGTCTTGACCACCCACAC
CACATTGGAACACTCTGACTGTGCATTCATGGTTGATAACGAAGCTATCT
ACGATATCTGCCGAAGAAACCTCGACATTGAGCGCCCCACCTACACCAAC
TTGAACAGATTGATTGGTCAAATTGTGTCATCTATCACTGCATCACTTCG
GTTCGATGGGGCCCTAAATGTTGACTTGACTGAATTTCAAACTAACTTGG
TCCCATACCCACGTATCCATTTCCCATTGGCAACTTATGCTCCAGTTATC
TCTGCAGAGAAAGCTTACCATGAACAGCTCACTGTCTCAGAGATCACTAA
TGCCTGTTTCGAACCAGCTAACCAGATGGTCAAATGTGATCCACGACATG
GTAAATACATGGCTTGCTGCTTGCTCTACCGTGGTGATGTTGTCCCCAAA
GATGTCAATGCTGCCATTGCtactatcaaaacaaaacgtACAATCCAATT
TGTTGACTGGTGCCCAACTGGATTCAAAGTTGGAATCAATTACCAACCGC
CAACTGTTGTTCCAGGAGGTGATCTTGCTAAAGTTCAACGTGCTGTTTGC
ATGTTGTCCAACACCACTGCTGTTGCTGAAGCATGGGCCCGTTTGGATca
taaatttgatttgatgTACGCTAAACGTGCCTTTGTCCATTGGTATGTCG
GTGAAGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACATGGCA
GCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCCATTGATGATGA
TGGAGAAGGCGAAGATGACGAATATTAAGGAGATCTCCCCTAAACTGAGA
TCCTTTTTACAGTTATTTACTTGTAAGCAATATGTGTAAAAGAAATATGa
tgacatgaaaacaaagatacAAAAGACTGAAAATGATAAATTGAGACGTC
GTTCAgttcctttttgttttgaaatttttatactTGATTCAATTTTAGGT
CTTTtctaatttgtaaaattttcgatttgttctttACTGAAGTCCGTTCC
CAAAACATC
Run BLAST on NCBI

protein sequence of TCONS_00019672-protein

>TCONS_00019672-protein ID=TCONS_00019672-protein|Name=TCONS_00019672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MRECISVHVGQAGTQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGAGKHVPRAVFMDLEPTVVDEIRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTVGKEIIDQVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPAN
QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSIDDDGEGEDDE
Y
Run BLAST on NCBI

transcript from alignment at sc0000333:117016..120500-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019672 ID=TCONS_00019672|Name=TCONS_00019672|organism=Clytia hemisphaerica|type=transcript|length=3485bp|location=Sequence derived from alignment at sc0000333:117016..120500- (Clytia hemisphaerica)
CGCAAAGTATATCCCTGACTAAGTTTATCCACTTTTCAAAACTTTTCTTC
TTTGATAACAAATCTCAATCAACATGGTAAGTCCATCAGTTTTTTTCAGC
CTTTTTGCCTACAGTTTGGATCACTTCTACACAGGCCACAACTGACTTAT
CTTTGTAGACTCCTATCCTACAGATTTTAATCGTTTCTAATCGCTAAAGA
AATTGCTTCATACCTAATCAAACTTCCCGTGATTTTTTTTTTGCTTTGTT
GTGGTCAAAATTCTTAGAATTCTACTAGACAATGCAGTGTCTTCATTTTC
ATGGTGTTTAACTCGTCATGTGTCGTAACGTTTCGTTTTGTTATGAAGAC
ATTGCATTGCTTGATTTCAAATGGGGGAGTGTGCCTTGTCTAAGCAAAAA
TTTGTAATCTCATTCAAATTTTCTAGCGTGAATGTATCTCAGTCCATGTT
GGCCAAGCTGGAACTCAAATTGGTAATGCCNTGCAAACAATTAGAGCACT
TTATTCTTTGAAGTGCAAAATTAACAGCAATCTCTGATGCTGGGCCTTCA
TGCCGCCAGGCTGCTTGTTTTGATTATGTTATCCTTTTTCCTATGTGTCA
TTTTCGTCTCTATAGCAACTTGTAACAGATGTAAACAGATATATAAGAGA
ACAAAGGAGGTCTGGAAATAGAGCGGGCTTTTCTCGAGAAATCCTTTTGT
TCACAAGTTTGTTTTTGCCGTCACCGAGAAACCATAAACCACGTGATCTA
CAATAGTGGATTTCATTGGTTTAGAAAATTCAACAACCAATCAAATTCGA
TCATGTGCACTACATAAACTGCACCTTGATCTTCCATTCCTCATTCGTTC
TTCGCAAGGAAGTACAGGCGAACCGTTACGTCGCAAAGTATATCCCTGAC
TAAGTTTATCCACTTTTCAAAACTTTTCTTCTTTGATAACAAATCTCAAT
CAACATGGTAAGTCCATCAGTTTTTTTCAGCCTTTTTGCCTACAGTTTGG
ATCACTTCTACACAGGCCACAACTGACTTATCTTTGTAGACTCCTATCCT
ACAGATTTTAATCGTTTCTAATCGCTAAAGAAATTGCTTCATACCTAATC
AAACTTCCCGTGATTTTTTTTTGCTTTGTTGTGGTCAAAATTCTTAGAAT
TCTACTAGACAATGCAGTGTCTTCATTTTCATGGTGTTTAACTCGTCATG
TGTCGTTTTGTTATGAAGACATTGCATTGCTTGATTTCAAATGGGGGAGT
GTGCCTTGTCTATCTAAGCAAAAATTTATAATCTCATTCAAATTTTCCAG
CGTGAATGTATCTCAGTCCATGTTGGCCAAGCTGGAACCCAAATTGGTAA
TGCCTGCTGGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATGGTC
AAATGCCTTCAGACAAAACCATTGGAGGTGGAGATGATTCATTCAACACT
TTCTTCAGTGAAACTGGTGCCGGTAAACATGTCCCAAGAGCTGTTTTCAT
GGATTTAGAACCAACTGTTGTCGGTATGTGGAAAAGATTATTTCCCAAAA
TTATCTAGTATTGAAAGTAGAATGTCTCTGTGCTTCAGCTATGTCATCTT
ATCTGCCTGCGACTCAGCACTTTATCGCTCACTCATGTAAATTTATCAGA
AATTATTTAGTTCGAAGCTCCAATTTCGCTTAAAATAAATTTACCCTTAG
CTTTATGAAAAATTTCCAAACTGTAAAACCCATCAGATTATGTTATAATA
TATTTTTCAATAAGATAAGTAATTAAATTTTGTAATTGGAAATTCCACTA
TTGTACTCACTTTGAACAGGACTTTAAAAAACAGAGGTGATTATTTACTT
GGTTGATGTGGGTTTTTTTAGCCTGGAAAATTTTATGTTGGTCAGAATTT
AACTTTGTTTTATCCTTTTTCTTTTATAGATGAAATCAGAACTGGAACAT
ACCGTCAACTTTTCCACCCTGAACAACTGATCACTGGTAAAGAAGATGCT
GCCAACAATTACGCTCGTGGCCATTACACTGTTGGTAAAGAAATCATCGA
TCAAGTTTTGGACCGTACTAGAAAACTCGCTGATCAATGCACTGGTCTTC
AAGGATTTTTGATCTTCCACTCCTTCGGTGGTGGCACCGGATCTGGATTC
ACCTCCTTGTTGATGGAACGTCTTTCTGTCGATTATGGAAAGAAGTCCAA
ATTAGAGTTTGCTGTCTACCCAGCTCCCCAAATCTCCACAGCTGTTGTTG
AACCATACAATTCTGTCTTGACCACCCACACCACATTGGAACACTCTGAC
TGTGCATTCATGGTTGATAACGAAGCTATCTACGATATCTGCCGAAGAAA
CCTCGACATTGAGCGCCCCACCTACACCAACTTGAACAGATTGATTGGTC
AAATTGTGTCATCTATCACTGCATCACTTCGGTTCGATGGGGCCCTAAAT
GTTGACTTGACTGAATTTCAAACTAACTTGGTCCCATACCCACGTATCCA
TTTCCCATTGGCAACTTATGCTCCAGTTATCTCTGCAGAGAAAGCTTACC
ATGAACAGCTCACTGTCTCAGAGATCACTAATGCCTGTTTCGAACCAGCT
AACCAGATGGTCAAATGTGATCCACGACATGGTAAATACATGGCTTGCTG
CTTGCTCTACCGTGGTGATGTTGTCCCCAAAGATGTCAATGCTGCCATTG
CTACTATCAAAACAAAACGTACAATCCAATTTGTTGACTGGTGCCCAACT
GGATTCAAAGTTGGAATCAATTACCAACCGCCAACTGTTGTTCCAGGAGG
TGATCTTGCTAAAGTTCAACGTGCTGTTTGCATGTTGTCCAACACCACTG
CTGTTGCTGAAGCATGGGCCCGTTTGGATCATAAATTTGATTTGATGTAC
GCTAAACGTGCCTTTGTCCATTGGTATGTCGGTGAAGGTAAGGAAAACCA
AATTTAAAATATTTTGATTTTGAAATTATGCACAATAAAAGGATATCAAA
ATTGATTGTATTTTAATTTTAAGCTTAGCAATGTACTAAAATTATAAAGT
GCAAATCCAAAATCATTGAAAGTGATTATGCTGGCCACATTTTGAAATCA
CTGAACTATAAGTTTCATATCATTCTTTCCAGGTATGGAAGAAGGAGAGT
TTTCAGAAGCTCGTGAAGACATGGCAGCCTTGGAGAAAGATTACGAAGAA
GTCGGTGTTGATTCCATTGATGATGATGGAGAAGGCGAAGATGACGAATA
TTAAGGAGATCTCCCCTAAACTGAGATCCTTTTTACAGTTATTTACTTGT
AAGCAATATGTGTAAAAGAAATATGATGACATGAAAACAAAGATACAAAA
GACTGAAAATGATAAATTGAGACGTCGTTCAGTTCCTTTTTGTTTTGAAA
TTTTTATACTTGATTCAATTTTAGGTCTTTTCTAATTTGTAAAATTTTCG
ATTTGTTCTTTACTGAAGTCCGTTCCCAAAACATC

Coding sequence (CDS) from alignment at sc0000333:117016..120500-

>TCONS_00019672 ID=TCONS_00019672|Name=TCONS_00019672|organism=Clytia hemisphaerica|type=CDS|length=5424bp|location=Sequence derived from alignment at sc0000333:117016..120500- (Clytia hemisphaerica)
GTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACATGGCAGCCTTG
GAGAAAGATTACGAAGAAGTCGGTGTTGATTCCATTGATGATGATGGAGA
AGGCGAAGATGACGAATATTAAATGAAATCAGAACTGGAACATACCGTCA
ACTTTTCCACCCTGAACAACTGATCACTGGTAAAGAAGATGCTGCCAACA
ATTACGCTCGTGGCCATTACACTGTTGGTAAAGAAATCATCGATCAAGTT
TTGGACCGTACTAGAAAACTCGCTGATCAATGCACTGGTCTTCAAGGATT
TTTGATCTTCCACTCCTTCGGTGGTGGCACCGGATCTGGATTCACCTCCT
TGTTGATGGAACGTCTTTCTGTCGATTATGGAAAGAAGTCCAAATTAGAG
TTTGCTGTCTACCCAGCTCCCCAAATCTCCACAGCTGTTGTTGAACCATA
CAATTCTGTCTTGACCACCCACACCACATTGGAACACTCTGACTGTGCAT
TCATGGTTGATAACGAAGCTATCTACGATATCTGCCGAAGAAACCTCGAC
ATTGAGCGCCCCACCTACACCAACTTGAACAGATTGATTGGTCAAATTGT
GTCATCTATCACTGCATCACTTCGGTTCGATGGGGCCCTAAATGTTGACT
TGACTGAATTTCAAACTAACTTGGTCCCATACCCACGTATCCATTTCCCA
TTGGCAACTTATGCTCCAGTTATCTCTGCAGAGAAAGCTTACCATGAACA
GCTCACTGTCTCAGAGATCACTAATGCCTGTTTCGAACCAGCTAACCAGA
TGGTCAAATGTGATCCACGACATGGTAAATACATGGCTTGCTGCTTGCTC
TACCGTGGTGATGTTGTCCCCAAAGATGTCAATGCTGCCATTGCTACTAT
CAAAACAAAACGTACAATCCAATTTGTTGACTGGTGCCCAACTGGATTCA
AAGTTGGAATCAATTACCAACCGCCAACTGTTGTTCCAGGAGGTGATCTT
GCTAAAGTTCAACGTGCTGTTTGCATGTTGTCCAACACCACTGCTGTTGC
TGAAGCATGGGCCCGTTTGGATCATAAATTTGATTTGATGTACGCTAAAC
GTGCCTTTGTCCATTGGTATGTCGGTGAAGCGTGAATGTATCTCAGTCCA
TGTTGGCCAAGCTGGAACCCAAATTGGTAATGCCTGCTGGGAATTGTACT
GTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGACAAAACC
ATTGGAGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAAACTGGTGC
CGGTAAACATGTCCCAAGAGCTGTTTTCATGGATTTAGAACCAACTGTTG
TCGATGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACATGGCA
GCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCCATTGATGATGA
TGGAGAAGGCGAAGATGACGAATATTAAATGAAATCAGAACTGGAACATA
CCGTCAACTTTTCCACCCTGAACAACTGATCACTGGTAAAGAAGATGCTG
CCAACAATTACGCTCGTGGCCATTACACTGTTGGTAAAGAAATCATCGAT
CAAGTTTTGGACCGTACTAGAAAACTCGCTGATCAATGCACTGGTCTTCA
AGGATTTTTGATCTTCCACTCCTTCGGTGGTGGCACCGGATCTGGATTCA
CCTCCTTGTTGATGGAACGTCTTTCTGTCGATTATGGAAAGAAGTCCAAA
TTAGAGTTTGCTGTCTACCCAGCTCCCCAAATCTCCACAGCTGTTGTTGA
ACCATACAATTCTGTCTTGACCACCCACACCACATTGGAACACTCTGACT
GTGCATTCATGGTTGATAACGAAGCTATCTACGATATCTGCCGAAGAAAC
CTCGACATTGAGCGCCCCACCTACACCAACTTGAACAGATTGATTGGTCA
AATTGTGTCATCTATCACTGCATCACTTCGGTTCGATGGGGCCCTAAATG
TTGACTTGACTGAATTTCAAACTAACTTGGTCCCATACCCACGTATCCAT
TTCCCATTGGCAACTTATGCTCCAGTTATCTCTGCAGAGAAAGCTTACCA
TGAACAGCTCACTGTCTCAGAGATCACTAATGCCTGTTTCGAACCAGCTA
ACCAGATGGTCAAATGTGATCCACGACATGGTAAATACATGGCTTGCTGC
TTGCTCTACCGTGGTGATGTTGTCCCCAAAGATGTCAATGCTGCCATTGC
TACTATCAAAACAAAACGTACAATCCAATTTGTTGACTGGTGCCCAACTG
GATTCAAAGTTGGAATCAATTACCAACCGCCAACTGTTGTTCCAGGAGGT
GATCTTGCTAAAGTTCAACGTGCTGTTTGCATGTTGTCCAACACCACTGC
TGTTGCTGAAGCATGGGCCCGTTTGGATCATAAATTTGATTTGATGTACG
CTAAACGTGCCTTTGTCCATTGGTATGTCGGTGAAGCGTGAATGTATCTC
AGTCCATGTTGGCCAAGCTGGAACCCAAATTGGTAATGCCTGCTGGGAAT
TGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGAC
AAAACCATTGGAGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAAAC
TGGTGCCGGTAAACATGTCCCAAGAGCTGTTTTCATGGATTTAGAACCAA
CTGTTGTCGATGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGAC
ATGGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCCATTGA
TGATGATGGAGAAGGCGAAGATGACGAATATTAAATGAAATCAGAACTGG
AACATACCGTCAACTTTTCCACCCTGAACAACTGATCACTGGTAAAGAAG
ATGCTGCCAACAATTACGCTCGTGGCCATTACACTGTTGGTAAAGAAATC
ATCGATCAAGTTTTGGACCGTACTAGAAAACTCGCTGATCAATGCACTGG
TCTTCAAGGATTTTTGATCTTCCACTCCTTCGGTGGTGGCACCGGATCTG
GATTCACCTCCTTGTTGATGGAACGTCTTTCTGTCGATTATGGAAAGAAG
TCCAAATTAGAGTTTGCTGTCTACCCAGCTCCCCAAATCTCCACAGCTGT
TGTTGAACCATACAATTCTGTCTTGACCACCCACACCACATTGGAACACT
CTGACTGTGCATTCATGGTTGATAACGAAGCTATCTACGATATCTGCCGA
AGAAACCTCGACATTGAGCGCCCCACCTACACCAACTTGAACAGATTGAT
TGGTCAAATTGTGTCATCTATCACTGCATCACTTCGGTTCGATGGGGCCC
TAAATGTTGACTTGACTGAATTTCAAACTAACTTGGTCCCATACCCACGT
ATCCATTTCCCATTGGCAACTTATGCTCCAGTTATCTCTGCAGAGAAAGC
TTACCATGAACAGCTCACTGTCTCAGAGATCACTAATGCCTGTTTCGAAC
CAGCTAACCAGATGGTCAAATGTGATCCACGACATGGTAAATACATGGCT
TGCTGCTTGCTCTACCGTGGTGATGTTGTCCCCAAAGATGTCAATGCTGC
CATTGCTACTATCAAAACAAAACGTACAATCCAATTTGTTGACTGGTGCC
CAACTGGATTCAAAGTTGGAATCAATTACCAACCGCCAACTGTTGTTCCA
GGAGGTGATCTTGCTAAAGTTCAACGTGCTGTTTGCATGTTGTCCAACAC
CACTGCTGTTGCTGAAGCATGGGCCCGTTTGGATCATAAATTTGATTTGA
TGTACGCTAAACGTGCCTTTGTCCATTGGTATGTCGGTGAAGCGTGAATG
TATCTCAGTCCATGTTGGCCAAGCTGGAACCCAAATTGGTAATGCCTGCT
GGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCT
TCAGACAAAACCATTGGAGGTGGAGATGATTCATTCAACACTTTCTTCAG
TGAAACTGGTGCCGGTAAACATGTCCCAAGAGCTGTTTTCATGGATTTAG
AACCAACTGTTGTCGATGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGT
GAAGACATGGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTC
CATTGATGATGATGGAGAAGGCGAAGATGACGAATATTAAATGAAATCAG
AACTGGAACATACCGTCAACTTTTCCACCCTGAACAACTGATCACTGGTA
AAGAAGATGCTGCCAACAATTACGCTCGTGGCCATTACACTGTTGGTAAA
GAAATCATCGATCAAGTTTTGGACCGTACTAGAAAACTCGCTGATCAATG
CACTGGTCTTCAAGGATTTTTGATCTTCCACTCCTTCGGTGGTGGCACCG
GATCTGGATTCACCTCCTTGTTGATGGAACGTCTTTCTGTCGATTATGGA
AAGAAGTCCAAATTAGAGTTTGCTGTCTACCCAGCTCCCCAAATCTCCAC
AGCTGTTGTTGAACCATACAATTCTGTCTTGACCACCCACACCACATTGG
AACACTCTGACTGTGCATTCATGGTTGATAACGAAGCTATCTACGATATC
TGCCGAAGAAACCTCGACATTGAGCGCCCCACCTACACCAACTTGAACAG
ATTGATTGGTCAAATTGTGTCATCTATCACTGCATCACTTCGGTTCGATG
GGGCCCTAAATGTTGACTTGACTGAATTTCAAACTAACTTGGTCCCATAC
CCACGTATCCATTTCCCATTGGCAACTTATGCTCCAGTTATCTCTGCAGA
GAAAGCTTACCATGAACAGCTCACTGTCTCAGAGATCACTAATGCCTGTT
TCGAACCAGCTAACCAGATGGTCAAATGTGATCCACGACATGGTAAATAC
ATGGCTTGCTGCTTGCTCTACCGTGGTGATGTTGTCCCCAAAGATGTCAA
TGCTGCCATTGCTACTATCAAAACAAAACGTACAATCCAATTTGTTGACT
GGTGCCCAACTGGATTCAAAGTTGGAATCAATTACCAACCGCCAACTGTT
GTTCCAGGAGGTGATCTTGCTAAAGTTCAACGTGCTGTTTGCATGTTGTC
CAACACCACTGCTGTTGCTGAAGCATGGGCCCGTTTGGATCATAAATTTG
ATTTGATGTACGCTAAACGTGCCTTTGTCCATTGGTATGTCGGTGAAGCG
TGAATGTATCTCAGTCCATGTTGGCCAAGCTGGAACCCAAATTGGTAATG
CCTGCTGGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAA
ATGCCTTCAGACAAAACCATTGGAGGTGGAGATGATTCATTCAACACTTT
CTTCAGTGAAACTGGTGCCGGTAAACATGTCCCAAGAGCTGTTTTCATGG
ATTTAGAACCAACTGTTGTCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011074XLOC_011074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019672-exon-sc0000333-1575043694:120479..120500TCONS_00019672-exon-sc0000333-1575043694:120479..120500Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1575043694:119544..119596TCONS_00019672-exon-sc0000333-1575043694:119544..119596Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1575043694:118978..119200TCONS_00019672-exon-sc0000333-1575043694:118978..119200Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1575043694:117564..118571TCONS_00019672-exon-sc0000333-1575043694:117564..118571Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1575043694:117016..117368TCONS_00019672-exon-sc0000333-1575043694:117016..117368Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1510915933:120479..120500TCONS_00019672-exon-sc0000333-1510915933:120479..120500Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1510915933:119544..119596TCONS_00019672-exon-sc0000333-1510915933:119544..119596Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1510915933:118978..119200TCONS_00019672-exon-sc0000333-1510915933:118978..119200Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1510915933:117564..118571TCONS_00019672-exon-sc0000333-1510915933:117564..118571Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1510915933:117016..117368TCONS_00019672-exon-sc0000333-1510915933:117016..117368Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1491911889:120479..120500TCONS_00019672-exon-sc0000333-1491911889:120479..120500Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1491911889:119544..119596TCONS_00019672-exon-sc0000333-1491911889:119544..119596Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1491911889:118978..119200TCONS_00019672-exon-sc0000333-1491911889:118978..119200Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1491911889:117564..118571TCONS_00019672-exon-sc0000333-1491911889:117564..118571Clytia hemisphaericaexon
TCONS_00019672-exon-sc0000333-1491911889:117016..117368TCONS_00019672-exon-sc0000333-1491911889:117016..117368Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019672-proteinTCONS_00019672-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:117016..120500 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1193.32	1099.39	1563.81	1237.78	2030.79	1460.18	1632.92	1464.5	1470.44	1492.64	1964.24	1570.11	613.027	686.583	792.939	699.52	1203.42	1091.5	878.374	732.93	495.027	582.821	842.255	670.16	426.74	418.781	675.228	884.746	696.406	676.241
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
[Close]
BLAST of TCONS_00019672 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 863.218 bits (2229), Expect = 0.000e+0
Identity = 416/432 (96.30%), Postives = 429/432 (99.31%), Query Frame = 1 
Query:   73 MRECISVHVGQAGTQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFMDLEPTVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDQVLDRTRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 1368
            MRECIS+HVGQAG QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF+DLEPTV+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEIID VLDR RKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF++YPAPQ+STAVVEPYNS+LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of TCONS_00019672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A0.000e+096.30Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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