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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019654 ID=TCONS_00019654|Name=TCONS_00019654|organism=Clytia hemisphaerica|type=transcript|length=1363bp
ATTTACGATAaagactaatttgaccaaaatacAATCTTTCAAgggtaaaa
atttttcttatttttccgacccttaactatatttgattttctgatttttc
ccaCTCTTACAGGGACTTCCAAGCTAAAAAAACAAGATGAAGtatctaat
ttgttcgaatttcTtGAAAGGTTGAAGCTGGACGCTAGAgcgggatgaaa
aacttcaagatGACAGATGGGTTATGCATCTAAAGTCAACCATCATCGAC
CAAGCGAGTCAAAACCGGGCAGTTCAAAAAGGTGACAGTTAGGTTTGTAA
AGCTCTTCGAACGTTTAAAAGTAGTGAACAAGATATCTATTTTATCGATA
CCTATTCTCAAACGATAATGGCACCACACGAATCAACAAGAATCGAATCA
ATTCGACCAATCACTATGGAATCGATTTTATTCGGGGATGAACTTAACAC
TGATAGCTTGAAAACGAAAATCGAGGACTACGATTTTTATCGATATCTCG
TTTCTGATTTTCACGGAATTGCTCGGTGTAAAATTATCACTAAATCAGCG
TACCCGCGCATGTCAAAAAAGGGGCCTGGAATTGCTTGGAGGACACCTGT
TCTATCGTTCGACAGTTTCAACAATTATGATCTGACACGGGTTGATGGTA
AACGATGCACGGACGCGCGGTTGATCGTTGAACAAAGCGTCCCCCGTCCG
CTACAGTGGGCAGGAAAAGGACACTCAGTTGCAGGTGTTATATGTGAAAC
ATGGTGGGGAGTTGATGAACAACCACAAATGGCATGTCCACGCTATATGG
CCCGACGTCTATGCGAGAAACTTGAATCAGAATTCAAGCTACGCATTCTT
CACGCTTCAGAAATGGAGTTCACCATCTTCAAAGAAAACATGGAACCACT
TTTTGAAGAAGGTGGTTTCTACATTTCACAAGAGTTCGCCAACCATGAAG
AAGAGCTTCTCTCTTTATCAACGATGTGCGAGAAAGCAGGTATCCCAATT
GAAACACTTCAAACAGAATATGGACCAGGGCAAATCGAACTTGTATTAAA
ACCAGAATTTGGTGTCGAAGGAGCTGACaatgaatttttgtttaaaaatg
ctgccAAAGAAATGCTACAAAAACCAGGACAATATTCGAGATGTACTTTC
ATGTCTAAACCAATCATAGATAAAGTTGgaaacGGGAGCCATTACAACCA
TTCATTATGGAAAGTTAAAGAAAACGGAGACGTCNTTCGAACTAAATCGT
TGGTTATCTCAACTTGAAAGTCgcataaaatactctctgtaaaTTTTCGG
TCTcttaaaatcgaattagagagagtcaaatGCGTAGCTTTTtcttcgaa
atagtttcaatgA Run BLAST on NCBI transcript from alignment at sc0000333:271116..277676+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019654 ID=TCONS_00019654|Name=TCONS_00019654|organism=Clytia hemisphaerica|type=transcript|length=6561bp|location=Sequence derived from alignment at sc0000333:271116..277676+ (Clytia hemisphaerica)
ATTTACGATAaagactaatttgaccaaaatacAATCTTTCAAgggtaaaa
atttttcttatttttccgacccttaactatatttgattttctgatttttc
ccaCTCTTACAGGGACTTCCAAGCTAAAAAAACAAGATGAAGtatctaat
ttgttcgaatttcTGTAAGTGTTTCTCCCTTCTTTATCCTACAATTCTtc
atatgcgtaagtcatttttctagcggaaacatcctaaaaaagccgggatt
tgacctctctctgttactaaaaatagaaacaaagaGGTCAAAAATaacgg
cttttttgggtgcttccgttaaaaaatatgacgccATCtcgacttacgca
tatcaagaatatcaTCATTTTGAACCTAAagaattttttaatacgccCTG
TATCACAATAATATTTGCCCCCgtaggagcgcagcgacgaggaggcactc
atagcttcatgCATAGATAATGgattattaaaaaacatgtagaaGATTCA
AAGCCACGTTTGTAAGGACAGTTTACAGTGGGATTAAAGTTGAAATTTAC
TTTCGTTTACTTATTTGAAATGGACTTTGGAGGTCAGTGAtgcatttcaa
ttttattttacttgGGAAGTGTATTAtcgactctatccgccgcgcaacat
attacgttttataatatacaaactatgttatatcataatagtatattata
cggacgatatcgtctacggtgcgcaaggttgtgggttcgatccccagccg
ggtcataccaaagatttccaaaatactACTTGATCCCTCTCTGCtcgatg
ctcagcaactaaagagacggatcaagggtaagtggagaaatccaggggaA
GTAGTGGTACCCTcctctaccttcgggtagacagctatactaaaagggag
cctttgggtcgccctcgactgcggtcttACTTGAGATTGAATGAGACTTA
AGACAAGCTTGAGATCTTAAgatctaaaaaagttaaaaatgttccaataa
ggttTCTGGAAGCCAATTTCAAAACTGAAATGCCTCGAATAACGTAGGAA
AACTGAAGTCGCCATTCTAGCCTGagctttgaaaattgaaatacctAGAA
ATGCTAataaatgaatgtaaataatttttttttttttgtgtttagtGAAA
GGTTGAAGCTGGACGCTAGAgcgggatgaaaaacttcaagatGACAGATG
GGTTATGCAGTAAGTTATgaatcttttctatttttcttgaaatgCCCCTG
AAagaggtacacgtttttttataagaaaatcaaagttttttgaagctttc
ggatattcttaaccttttgggttttaagcctaaaatcgttcttaaaatgt
tcttattttttccattttgtgaccttttttacccattttcctaaaaaaat
caGGTGTATTcaagtccgcaaagccttaaaattagcctaccttaaaatgt
tcttaacttgttcttagcattttggtgatcgaagccttatgttcttatat
agtttgttcttgtcaAAAAGCATGTAGAAGATTCAAAGCCAGGTTTGTAA
GGACAGTTTACAGTGGGTTTAAAGTTGAAATTTACTTATTTGAAATGGAC
TTTGGAGTTCAGTGAtgcatttcaattttattttacttgggaagaaaaaa
agaaaaaaatcaaaaaaaaagaaaaaattcaaaaatatttgcaaaaaatc
CTTGGAGATCGAATTGAAAAACAGGTTCATCTAGTTGTTTATCTAGTTTT
GATgacagaaaatattttaattagagagggagaaaaaaacaacgaacAAA
TTCTCTAAAGAAAAATCGGGCTTAACAAAAACATTTCGTGATATATATTA
ATTGATTGCGCAATCAGATCTTGTAAAACACGTTTGCTTGCTTATGTTCA
GTCCCTTTGCACGTTTTATTATAAGagcaaactttataagaacataaggc
ttcgatggtcaaaatgttaagaacaagttaagaacaatttaaggctttgc
agactctaaaacacccaattttttaggaaaatggacaagaatactaaaaa
aatggaacatgttaaaaatattttaaggcttaaaaatcaaaaagttaaga
acacccataaaaaaacgtgttgtCTCTTTATAAGAATTCTAAAGCTGTGT
CGATTTTTCTGGGCAGTAAAATCAAGTAAAAATGTTACAGACTAATATAT
AGGATTCAAATATCGGGATAGACCTGCTTTCTTTCTCGCCACGGAATTTA
AATGTACAAgaagtacatattttttataagaacatttgagTCCacagagc
cttaaaatgttcttaacttgttcttaatattttggccagcGGAGCCTTAT
TATCTTATATACTGTAGTTTGTTGTTATAAATAGTTTGAAAAACTGTGAT
ATAATGTCGGAGCTTTTTTTAAATCCAGAGGACACCCTTTTACCAGTTAT
GGACACAAGGCATTGAAATCCTGTTGATCGTAAAGCAACCTTAACCAAGA
AGTTtttacttaaaggttttgtttttaaataagagtgatatcgtttgctt
acttacaagctttttcacttggattgacacggatgcggagcaagattggt
taaaaaaaggaaaagaaaagcatctttttgcttatatcagcacaatttaa
caataggcagatactgtcctgatatgaaatatttcttaaaaggTGTTTGG
TTTGAGTCATCAGACAGGGTCGAGTAGTAACGCCTGGTATCTGAAGTCAT
TAcaaagaatggtgttttttcatttcatcatggatattcttaactttttg
gcgaaaatcgtccaaaaatattcttacggtattcttaggttaagatcgaa
attggcaatctacaggttaaaatgcattaaaaatggcatttttaggttta
gttgctaaatttcatgatggtgatattcttaccatattcttaattttttg
cccattttcatcatggacattcttataaagtgtattcttataataaaaaa
agcgtgtacatcgAGGTCCTTCCAAATATACAATaaactctctttaattc
gaacatcTTTTATTTGAAAGGTTCTGTAATTCGACCTAGAACATTGGACC
CCTTTAGCTAGAGAGTCGGACAAACCATGCTCTGTAATCTGACAGATCTT
TTGATGGTTCAAAAACAGTAGCTTGGTCATTTGACGATCGAATTGTAGAG
AGGCAACTGTACACCTTTTCGTAAATGTTTTAGCTTAGGGTCTATATAGG
AGgtgaccgtagtgcagtggtagagcatccggctaacggttcgcaaggtt
gtgggttcaatccccagccggtcataccaaagattccaaaACTGtatact
tgatgcctctctgcttgttgctcagaaattaaaagaacgatcaagggtaa
gtggagcaatccaggaagagtggcgccctcccctaccttcgggttgaaag
ctatcgaaagaggagcctgcGGGTCGCCTCCATCTGCGGTcgtagactta
cttacttactgctTAGGAGGCCCCCTCACAAGCGGTAtgtctgatcacga
tatcacgcaaatTCTGTCTTGGATCACGATCCCGCAAATTCAGCAAAAAG
ATTGGATAATCgtgcatccctttgaaaaagtcaaaatcacgCATCATGGC
TCAAAAATCtatcaaatcacgatcacggtTTGACCTCTTATCCGGCAATC
acgtagtctagcaagctagacgactaattcagacttattagaaatgaagc
aaaaaagtaaattttagtcgtctagaaacctttgtgcactaactccaaac
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAACACCgaattcttcca
gtcgtttatacaaactaaatcccgtatcattatttgtgtttattattagt
attacatgcattataaacgactccagtctagcaatcacgaaaaaatctcc
aaatcacgtaatcgcGGTaaaaaaaagtccctatcacgccatcacgaaaa
ctgTTTGGGGGCCTCGCATAGGACCTCTAAAATCTAACAAAATGTTAACA
TTCTACTTTAATTTCTTATATTTAAAAAgtcattttgaaattgaattaaG
TACGCGATGTGTGATTTATTGATTAAGCCCTTTGCTCTCAAGCTGTAAAC
ATCTAAATCTTAGCAGAGATTTATTTCTGCTTTAAAAACTTAATTGGGCA
ACAAATATTACGAAATTATTAAAAGAAAGACGTATCTAATTTTGCTATat
tcgttttgtataagaacatccacaacttttgaagcctttggatgttctta
actttttgagttttataagcctaaaaatgtttttagcatatctttatttt
caccataatgtgagtatttttttccatttttcctaagaaatcgggttgTT
AAGTAGTACACAAAggctaaaaattgtaaaaatgttctcaacttgctCTT
AAGATTtaggccatcaaagccttatgttttaTCAAAgtttgttcatataa
aaaaggGGTAATGGAAACTGCTAAGAAACTCATTTACGCTTATGCTTCGA
TaaaatttctaataaaaaatggaTGATGAAATATCACTTAAAAAACTTAT
AGGGTTATCATTAATGACGTGATCTGAATAGctcttgcaaaaaaaaaacg
ctCAATACTCTTTATTAGAGATTTGTCCTAAGATTACTAGTAAGAATTTG
TTTGAATTTGTTCTATTCTTAGCTAGGATATCCTCTTTATTACTAAAACt
ggtttttcaagttttagatGTTTATACTAATGAGTTATATTGATCAAATT
TCGAAATTGCTGATTGTCACTTTTTAAGTTATTCTGGTAAAACAAGACGA
GAATAAAAAGTATTTAAGGCCGCTGAATTTGTTAATATCTCACTCATACT
TCAAAGTCTAAAGTCAACCATCATCGACCAAGCGAGTCAAAACCGGGCAG
TTCAAAAAGGTGACAGTTAGGTTTGTAAAGCTCTTCGAACGTTTAAAAGT
AGTGAACAAGATATCTATTTTATCGATACCTATTCTCAAACGATAATGGC
ACCACACGAATCAACAAGAATCGAATCAATTCGACCAATCACTATGGAAT
CGATTTTATTCGGGGATGAACTTAACACTGATAGCTTGAAAACGAAAATC
GAGGACTACGATTTTTATCGATATCTCGTTTCTGATTTTCACGGAATTGC
TCGGTGTAAAATTATCACTAAATCAGCGTACCCGCGCATGTCAAAAAAGG
GGCCTGGAATTGCTTGGAGGACACCTGTTCTATCGTTCGACAGTTTCAAC
AATTATGATCTGACACGGGTTGATGGTAAACGATGCACGGACGCGCGGTT
GATCGTTGAACAAAGCGTCCCCCGTCCGCTACAGTGGGCAGGAAAAGGAC
ACTCAGTTGCAGGTGTTATATGTGAAACATGGTGGGGAGTTGATGAACAA
CCACAAATGGCATGTCCACGCTATATGGCCCGACGTCTATGCGAGAAACT
TGAATCAGAATTCAAGCTACGCATTCTTCACGCTTCAGAAATGGAGTTCA
CCATCTTCAAAGAAAACATGGAACCACTTTTTGAAGAAGGTGGTTTCTAC
ATTTCACAAGAGTTCGCCAACCATGAAGAAGAGCTTCTCTCTTTATCAAC
GATGTGCGAGAAAGCAGGTATCCCAATTGAAACACTTCAAACAGAATATG
GACCAGGGCAAATCGAACTTGTATTAAAACCAGAATTTGGTGTCGAAGGA
GCTGACaatgaatttttgtttaaaaatgctgccAAAGAAATGCTACAAAA
ACCAGGACAATATTCGAGATGTACTTTCATGTCTAAACCAATCATAGATA
AAGTTGGTAAGTTAcatcttatttttctttaactttATGTAATCGGAATA
GTAtccaagctggcacacaacgttgtttcaacgtttatctaacgttcaca
acgtctatataacgttagatgaacgttgaaagaacgttctTTGCCAGCTG
GGTACAATCCTTTATCGGGGAATTTTTATTCATCTCGCCAATTTTTCTAA
TTTGGCTACGCCGTTGGGAAAACAAAAACGAGCAGTCTTTTTTACAAAGT
CAACGAAAACAGGAAAAACTTGGTGAGATTTCACTAGGATTTCAACTAGG
AAATAAGAACCTGGAAATAAGAACCTTACTTTCTTTACTTTTCTCGATTA
ACTATTCCGATTGGGTTACGTTTTCTAGAAAACGGGAATAAGAACTAGTC
GACCAAGGACAGAGAATCCCACTCTACTTTCcttacttttatttattaac
TATTCCGATcgggtttggttttataggaaacGGGAGCCATTACAACCATT
CATTATGGAAAGTTAAAGAAAACGGAGACGTCNTTCGAACTAAATCGTTG
GTTATCTCAACTTGAAAGTCgcataaaatactctctgtaaaTTTTCGGTC
TcttaaaatcgaattagagagagtcaaatGCGTAGCTTTTtcttcgaaat
agtttcaatgA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019654-exon-sc0000333-1491911889:271116..271279 | TCONS_00019654-exon-sc0000333-1491911889:271116..271279 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1510915933:271116..271279 | TCONS_00019654-exon-sc0000333-1510915933:271116..271279 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1575043694:271116..271279 | TCONS_00019654-exon-sc0000333-1575043694:271116..271279 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1491911889:272261..272324 | TCONS_00019654-exon-sc0000333-1491911889:272261..272324 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1510915933:272261..272324 | TCONS_00019654-exon-sc0000333-1510915933:272261..272324 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1575043694:272261..272324 | TCONS_00019654-exon-sc0000333-1575043694:272261..272324 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1491911889:276072..277021 | TCONS_00019654-exon-sc0000333-1491911889:276072..277021 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1510915933:276072..277021 | TCONS_00019654-exon-sc0000333-1510915933:276072..277021 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1575043694:276072..277021 | TCONS_00019654-exon-sc0000333-1575043694:276072..277021 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1491911889:277492..277676 | TCONS_00019654-exon-sc0000333-1491911889:277492..277676 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1510915933:277492..277676 | TCONS_00019654-exon-sc0000333-1510915933:277492..277676 | Clytia hemisphaerica | exon |
| TCONS_00019654-exon-sc0000333-1575043694:277492..277676 | TCONS_00019654-exon-sc0000333-1575043694:277492..277676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000333 | supercontig | sc0000333:271116..277676 + |
Blast
The following BLAST results are available for this feature:
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