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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019614 ID=TCONS_00019614|Name=TCONS_00019614|organism=Clytia hemisphaerica|type=transcript|length=1648bp
TAGAAGATCCCATCCAAAACAGAGTGATGGCGCAACCAACCAAGTCGTAT
ACAGAAATagttgatattttcaaaaaaatcggTATCAACGATCCTGAAAA
ACTTTCGGACACTGACATCGTATCATTTGCCAAAAAATATGCCGGTGGGG
AGCTATCTGGTAACGATATCAAAATGTTCTGTGAAgtgagaaagaaaaac
aaaacatacgAAAAGTTACCTGTTCCTGATCTAGAAGAAAATGCTCCTCT
AACAAAGGAGCATTTTCAAGATCTTCCCAACCTTGATGTCGACAGCAGAT
TGTCATTAATCCAAGGTGAGATCGATGAGGTAGGTCGTCAACCAATCGAC
TTTTCAACGATGACTGCTGCGGATTGGATGAAAGTCATTGTAGACTGCAA
CATGATCTATGctcgaattttcaaaaatctaggtAGCGGTTTGTCAGACC
TTCCCACGGAACCAATGTTCTTTCCCCCGAACAAATCATTGTTTGGAACC
CAAGATTTCAAAGTCTCCCAACATTCTTTGTTATACCGCCAAAAATCTGA
GCTTGCCgaacattttgatgaaaaagccGTCATAACAAATATCAAAGCTG
GAGGCTCTTTCTCGTCGCCATATGTATCAGGAAGTGCTGAATATTCACAT
GCAACACAAAATCGAACAGCTGAGAAAGATTCAAAGGTTACATCTGTGTT
CAAGGTTGAAAGTCCTGTCGGTGAATTCACTTTACCTTCTCCATCGGAGT
TGGCAGAATCTCAAATGAAGATCAACGACAACTTTGGGAATTTTGTAAAA
GATTACATTGAACAACACGAGGGCTGTTCAAAAGAAGAAGTGGTCAAGGA
AATGACCAGACGGTTTGGTGATGTCGTTCCTCGGAAGGTGATAATTGGAG
TTGCTTGCTATACAACACAAACGATTTCAATTAAAGAAACCCAAAGTCTC
GAAACTGTCTCTGATTCCTTCAAGGCGAGTGTGACTGCTTCATATGGCTG
TTTTGGTGCAAGTGCCAACGCCGGTGGTGGTTCAAGCGAATCGAGCGAAT
CAGGCGATAAAAGTCAAGAGAATAGCTATGCCTTTGCTGCCATCGCTGGA
AATCTTCCTGACCCAAGTAATCCGATGTCAATTGGTAATTATCGAAGTAT
ACCGAGCAGTTGGAGGATCATTCATTTAGGAGATGAATTGACCCCAGTAT
ACGATTATCTCAGCGGAGAAGCAAAAGATCAATTGAACAGCTTGGTTGGA
GGTGATACCCTTTCCCAGTCTGAAATTTTGGACCCAGGAAAGAAGAAAAT
ATCAATGAATGGAAAATATGAGGTTTTTATGCGAGAAGACGGTAACTTAC
AAATCCTTGGTCCAAATGGCGACGCACTATGGGAAACTTTAACTTCATGT
GACCCTGATCAGTTGAAAGGAGCTGTGTTAGACGGCAATGGAAGAATGCT
CGTTATTGACTTTGGTGGCCACACTCTCTGGTCGAGTTCCGATGATCAAC
GGGATGCAGTATTCATTGTGATTGAATATGATGGGTACTGGAGAGGATAT
AATAAGAATGGGGAGGTTCTTTATCAATTtccagaaaattaagaaaactg
AAATGTTAAGTTAAGCATTTTGTGACTACCAAAGTTtccaattatttt Run BLAST on NCBI transcript from alignment at sc0000332:296789..302780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019614 ID=TCONS_00019614|Name=TCONS_00019614|organism=Clytia hemisphaerica|type=transcript|length=5992bp|location=Sequence derived from alignment at sc0000332:296789..302780+ (Clytia hemisphaerica)
TAGAAGATCCCATCCAAAACAGAGGTAATCTTTTGTTGTGTTTTCTTTTA
CTGAAACCggtaaattttggctgaggtCAGTGGCGATGTGGCAGTGGGGG
CCAGGGTGCCATGTCCCCtccccccagcggagcttttttgaaggggcgcc
gatGGGCAAGGGGCGCTAAAAGAGATTTTTTctaacgccccaatcttaaa
aattatatttcatgcgccttaaattgcgccccaggaccaattttactgag
ataattttaaattacttgtatttttttcgctcgcaataaagttaattggt
aagttctttgcaatctagctaatttacaatttttttgtgtacaatataga
aataccttaaaggaacctttttttttgcgggaactagtttttgcggttcg
cagttcaagatttaatatttaatatttgcgggaacttaattttgcggatt
tctcacttgaaagaaaattggaGCCGTACTGTGAATTAATCGACCTTTGT
TTTTCGCATTTGCAAAATTTTGCGGGAGCTTAATTCTACGGTTTGGGCCT
AAATccgcaaaaaccgcaaaatttagttcccgcaaaaattggttccctta
aggtattaaatgaaaatctaactgtgcttcaagaccaatttgctgacaac
aatattgaaatcataaaacatcaattttcatCAAACATCGCTTCGCTCAC
ATTACACATTATTTCcttaaatttcttttcactctagcaagtgtcaaatt
tgtctatttgtCTATCTATCTTGGCAGTccgccccaaccatggtggggcc
tgtttttcccttttccattcatcaaagatatatatACTCTTATCcgctaa
atatttccttcctcgttatgcctaggcaaatgaattagtaaaagtttaga
aactgtTGGGTggccactttggaaaattgggggcaccatttaaaaataaa
ttgacTTTGGGTCCTCCAGAAAAACTTTCCCACAATGCCACTGGCCTGAG
GCTTGATTGTCTTTAGTTTTCTGGCTTGGATGCTCTTTTTAACCATTTAA
CTGTCGCTCGTATTTTTTAAGGGTGTGACCTATATGCcacgaaaaaaatg
aattttcgaCTTATTCCCAGATGTtgacatacatgttttttttataagca
agtgtatgccccttggtcaggctcgtgtatgcttaaagttctcaaagcat
ccaggcatagtttatgcttattatatgcttaagaatcatgcttatgattc
accccgagccaaagtttttaatgaaatttcagaaattttgttaaAGTTTT
GGTAGCAATggaatgatttattttttacttgacctctaccaaacctattt
aaacagataaaaatgaccacttgaaaaatattttaggctgacatatatgc
tcatgttatgcttaaaggaattctgcaaatctgagccttcatatgcttat
aagcgttatgcttataaaaaaaacatatatgcCGACATGAGCGACCACCA
TGAGTTTACCATCACATCtagctttattttctgaaaaatatcagaaatat
aaGTGACATGTGTttactttgagttgaaaaatgtataattgtgaaaaaca
tctttgaaatatatattttaattgATATTCAACTGTGCTATTTAATGAAA
TCtagttcaaaatcgaactttcaatAAACGTTTTCAATAActtctggcaa
ataggtcgagatCTCTCTTGTTGGCATTATGCCGACAGTGGTACGGAAAG
GTTTAATGTAATTTATTCACTTATTGACTTGAAAGAGGCTTAAGATTGGC
ATTTTCGTAGCCTATTCACAGATCTGAGGCTGCGATTGTTCATATTCAAG
AGAAATCGTATTTACATGCAAAAACAAGAATTTCCGTCAAGCTATATTCA
CTCGGGAGATTTGGGTGCCAAAATTGCATatacaatttttctttttggga
TTCATCGGGATTTATcgggatttttgtattttgtccCAACaagcaaaaat
ccaaatttggcGACTTGAATTTCTGACAATGGGAATTGTGATTATAAAGT
GTTGCTGTCAGCTgtatttttcaccaaatttcaaTATTAGAATTTCGTTT
CGTTTTAGTGATGGCGCAACCAACCAAGTCGTATACAGAAATagttgata
ttttcaaaaaaatcggTATCAACGATCCTGAAAAACTTTCGGACACTGAC
ATCGTATCATTTGCCAAAAAATATGCCGGTGGGGAGCTATCTGGTAACGA
TATCAAAATGTTCTGTGAAgtgagaaagaaaaacaaaacatacgAAAAGT
TACCTGTTCCTGATCTAGAAGAAAATGCTCCTCTAACAAAGGAGCATTTT
CAAGATCTTCCCAACCTTGATGTCGACAGCAGATTGTCATTAATCCAAGG
TGAGATCGATGAGGTAGGTCGTCAACCAATCGACTTTTCAACGATGACTG
CTGCGGATTGGATGAAAGTCATTGTAGACTGCAACATGATCTATGctcga
attttcaaaaatctaggtAGCGGTTTGTCAGACCTTCCCACGGAACCAAT
GTTCTTTCCCCCGAACAAATCATTGTTTGGAACCCAAGATTTCAAAGTCT
CCCAACATTCTTTGTTATACCGCCAAAAATCTGAGCTTGCCgaacatttt
gatgaaaaagccGTCATAACAAATATCAAAGCTGGAGGCTCTTTCTCGTC
GCCATATGTATCAGGAAGTGCTGAATATTCACATGCAACACAAAATCGAA
CAGCTGAGAAAGATTCAAAGGTTACATCTGTGTTCAAGGTTGAAAGTCCT
GTCGGTGAATTCACTTTACCTTCTCCATCGGAGTTGGCAGAATCTCAAAT
GAAGATCAACGACAACTTTGGGAATTTTGTAAAAGATTACATTGAACAAC
ACGAGGGCTGTTCAAAAGAAGAAGTGGTCAAGGAAATGACCAGACGGTTT
GGTGATGTCGTTCCTCGGAAGGTGATAATTGGAGTTGCTTGCTATACAAC
ACAAACGATTTCAATTAAAGAAACCCAAAGTCTCGAAACTGTCTCTGATT
CCTTCAAGGCGAGTGTGACTGCTTCATATGGCTGTTTTGGTGCAAGTGCC
AACGCCGGTGGTGGTTCAAGCGAATCGAGCGAATCAGGCGATAAAAGTCA
AGAGAATAGCTATGCCTTTGCTGCCATCGCTGGAAATCTTCCTGACCCAA
GTAATCCGATGTCAATTGGTAATTATCGAAGTATACCGAGCAGTTGGAGG
ATCATTCATTTAGGAGATGAATTGACCCCAGTATACGATTATCTCAGCGG
AGAAGCAAAAGATCAATTGAACAGCTGTAAGTATattctttcatttcttt
tttcaacCATTAAATCAATATACAGTAAacaactagccggtacccggcgt
cgcacgccggtttaactgtttgctgaacgcatttaaagtcctttggatgt
tgggaaggtggcataaacacgatgaaatcaaaattaaagagaagaattct
ctcaaagtttgactctatccctcccgggtgacgtatcttttaaccatatt
ttgaaaaagatttttgtggcaaaaatgatcagaaaacagaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTttaaacatggcagtttgaaaaatcggaaaatcaaacttcagtcc
cactaagaatcggaaaaataggaaaatttcaactttttgccccagaaaga
tagaaatttggtcaaattagttccaaaaagtgaattaaaattcacacaat
tatttcccttgtttcttctcctctttattctgctaagggtccgagggaca
GGGTCGAAAtacagctcgcaaccatagtccccccggaaggcagctaggac
acgcagacaaaaaagcgtgatagcgcaattttatgttgctttttataaaa
taacttcgtcataacttcgataacttttcaaattcaacgatgacttagat
ttacagcaaaataattatcgacatagatgtttaaaggtaccttttacgaa
gaaagaactctagctttaccgccttttgaatgtatttttaatgttgctgt
tgttctagtaacaaacttgtcttgcgatttttatgttttattttatattt
gttcttttctttaacagattctgtttaaaagatttgtttgttttgaaaag
aattcgaatgtatcaaatcaaataaggtcgttaattacattcgaaaacat
aaaacaaaagaaaagaaagaaaagaaagaaaaagtctaatctatcaatca
aaacaaagtctttataaaacggcgcgaatctgatttaacacatttgtgga
gcaagaagcaaaagtcatcttttaaaagaacaaaacattgattgcgaaaa
cgaaagtgacacacaaaaaacaaacaaacaacacatacagactacggcta
ttaataaggacgaaatgcatatgctgctctgccacccaaatctcctgaaa
gaagatagttggacagaaattctttgaatttcttcacatatatattcTTT
TTTGAGATCATGCAGTGTTGAGGCTTTCCTCCTTCTTGGTTCTCTTCAAA
GCTTGACTCCAGAGGAGTCATTCACATAATTCcctagggaatttcccttt
gtcCACTTCTTCTTTCAGTGTGCGCCACAATTAGTTTTATGGCGTGATTC
GATCTGCCTAGCCAGGGTGCTGACGAAGTCCTAATAAGGACAAAATGCAT
TTGCTGCTCTGCCatccaaatctcctgaaagaagatagttggacagaaat
tctttgaatttctttataTATAAACAATAGATAGTTTTTTGCTCGTCATT
TTCACTAGTGTAAGATATCAGCCATATACGACAGTGTGTGAAATTCCTTT
TTGATGACGCGCTGGTGGTTGGTTTGATTTTAAAGCTGTGACTGTAAGGT
TGTAGAACCAATATCACTTGTCAAAGTTTCACGTCCGTAGCATTTTGCCA
TGTTGTGATTCACTGTCTGTAAGATACAAGATACCGGCAGGAGGCAAAGA
AGCACCCTAAAAAACATATTGCATTgcaaaatttgggcgaaaaagggggg
gggggtcctatcTTTTGTATTTTATGGAATGATGACGTCTTCGGGTGACG
ATAATGCATATAAAATTGATCAATTCTTATTTTTAGTGGTTGGAGGTGAT
ACCCTTTCCCAGTCTGAAATTTTGGACCCAGGAAAGAAGAAAATATCAAT
GAATGGAAAATATGAGGTTTTTATGCGAGAAGACGGTAACTTACAAATCC
TTGGTCCAAATGGCGACGCACTATGGGAAACTTTAACTTCATGTGACCCT
GATCAGTTGAAAGGAGCTGTGTTAGACGGCAATGGAAGAATGCTCGTTAT
TGACTTTGGTGGCCACACTCTCTGGTCGAGTTCCGATGATCAACGGGATG
CAGTATTCATTGTGATTGAATATGATGGGTACTGGAGAGGATATAATAAG
AATGGGGAGGTTCTTTATCAATTtccagaaaattaagaaaactgAAATGT
TAAGTTAAGCATTTTGTGACTACCAAAGTTtccaattatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019614-exon-sc0000332-1491911889:296789..296812 | TCONS_00019614-exon-sc0000332-1491911889:296789..296812 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1510915933:296789..296812 | TCONS_00019614-exon-sc0000332-1510915933:296789..296812 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1575043694:296789..296812 | TCONS_00019614-exon-sc0000332-1575043694:296789..296812 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1491911889:298897..300114 | TCONS_00019614-exon-sc0000332-1491911889:298897..300114 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1510915933:298897..300114 | TCONS_00019614-exon-sc0000332-1510915933:298897..300114 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1575043694:298897..300114 | TCONS_00019614-exon-sc0000332-1575043694:298897..300114 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1491911889:302375..302780 | TCONS_00019614-exon-sc0000332-1491911889:302375..302780 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1510915933:302375..302780 | TCONS_00019614-exon-sc0000332-1510915933:302375..302780 | Clytia hemisphaerica | exon |
| TCONS_00019614-exon-sc0000332-1575043694:302375..302780 | TCONS_00019614-exon-sc0000332-1575043694:302375..302780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:296789..302780 + |
Blast
The following BLAST results are available for this feature:
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