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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019612 ID=TCONS_00019612|Name=TCONS_00019612|organism=Clytia hemisphaerica|type=transcript|length=1781bp
TAAATGCTCTAACTAGTGTAgttcacaaaaaataaaaaagtaaaaaaaaa
ggtgTGCTTTGGATACTTCAAGTCAAACCAACAGAAAATTGATTGGTTCA
AAAACATCTGTACTCATTGCGTATCAATACAATGGATTTCATAATGGGCA
GATTAAATGATGGCGCAACCAACCAAGTCGTATACAGAAATagttgatat
tttcaaaaaaatcggTATCAACGATCCTGAAAAACTTTCGGACACTGACA
TCGTATCATTTGCCAAAAAATATGCCGGTGGGGAGCTATCTGGTAACGAT
ATCAAAATGTTCTGTGAAgtgagaaagaaaaacaaaacatacgAAAAGTT
ACCTGTTCCTGATCTAGAAGAAAATGCTCCTCTAACAAAGGAGCATTTTC
AAGATCTTCCCAACCTTGATGTCGACAGCAGATTGTCATTAATCCAAGGT
GAGATCGATGAGGTAGGTCGTCAACCAATCGACTTTTCAACGATGACTGC
TGCGGATTGGATGAAAGTCATTGTAGACTGCAACATGATCTATGctcgaa
ttttcaaaaatctaggtAGCGGTTTGTCAGACCTTCCCACGGAACCAATG
TTCTTTCCCCCGAACAAATCATTGTTTGGAACCCAAGATTTCAAAGTCTC
CCAACATTCTTTGTTATACCGCCAAAAATCTGAGCTTGCCgaacattttg
atgaaaaagccGTCATAACAAATATCAAAGCTGGAGGCTCTTTCTCGTCG
CCATATGTATCAGGAAGTGCTGAATATTCACATGCAACACAAAATCGAAC
AGCTGAGAAAGATTCAAAGGTTACATCTGTGTTCAAGGTTGAAAGTCCTG
TCGGTGAATTCACTTTACCTTCTCCATCGGAGTTGGCAGAATCTCAAATG
AAGATCAACGACAACTTTGGGAATTTTGTAAAAGATTACATTGAACAACA
CGAGGGCTGTTCAAAAGAAGAAGTGGTCAAGGAAATGACCAGACGGTTTG
GTGATGTCGTTCCTCGGAAGGTGATAATTGGAGTTGCTTGCTATACAACA
CAAACGATTTCAATTAAAGAAACCCAAAGTCTCGAAACTGTCTCTGATTC
CTTCAAGGCGAGTGTGACTGCTTCATATGGCTGTTTTGGTGCAAGTGCCA
ACGCCGGTGGTGGTTCAAGCGAATCGAGCGAATCAGGCGATAAAAGTCAA
GAGAATAGCTATGCCTTTGCTGCCATCGCTGGAAATCTTCCTGACCCAAG
TAATCCGATGTCAATTGGTAATTATCGAAGTATACCGAGCAGTTGGAGGA
TCATTCATTTAGGAGATGAATTGACCCCAGTATACGATTATCTCAGCGGA
GAAGCAAAAGATCAATTGAACAGCTTGGTTGGAGGTGATACCCTTTCCCA
GTCTGAAATTTTGGACCCAGGAAAGAAGAAAATATCAATGAATGGAAAAT
ATGAGGTTTTTATGCGAGAAGACGGTAACTTACAAATCCTTGGTCCAAAT
GGCGACGCACTATGGGAAACTTTAACTTCATGTGACCCTGATCAGTTGAA
AGGAGCTGTGTTAGACGGCAATGGAAGAATGCTCGTTATTGACTTTGGTG
GCCACACTCTCTGGTCGAGTTCCGATGATCAACGGGATGCAGTATTCATT
GTGATTGAATATGATGGGTACTGGAGAGGATATAATAAGAATGGGGAGGT
TCTTTATCAATTtccagaaaattaagaaaactgAAATGTTAAGTTAAGCA
TTTTGTGACTACCAAAGTTtccaattatttt Run BLAST on NCBI transcript from alignment at sc0000332:295511..302780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019612 ID=TCONS_00019612|Name=TCONS_00019612|organism=Clytia hemisphaerica|type=transcript|length=7270bp|location=Sequence derived from alignment at sc0000332:295511..302780+ (Clytia hemisphaerica)
TAAATGCTCTAACTAGTGTAgttcacaaaaaataaaaaagtaaaaaaaaa
ggtgTGCTTTGGATACTTCAAGTCAAACCAACAGAAAATTGATTGGTTCA
AAAACATCTGTACTCATTGCGTATCAATACAATGGATTTCATAATGGGCA
GATTAAAGTGAGTTTcatttttcacttgttttttcttttagatttttcat
aatttttcctGATGTCTccgttgacaaatcaaaaaCCAATCATAAAATTA
GTGACTGAGAAAGCTAAGAGTTTTTCTATCTAGCTAGCCTTAAATTTGAG
ATTGGCCCATTTTGCATAGTGAGGAGCGTGCCATCTACATGAAACAaggt
caatctcaaaatttatgctCAGACAGACAGAAAAATTCTTAGGTTTCTCC
ggcaaaaattttgagattggaccttttgATTTCTCAGCGGCGGtgcttta
atgggataaaatttcaaCCACCAACATGCattatttgacagtaaaagtca
cgaaatcgtgaaaatattgccacccaatagtatcacccgcgaaattaagt
ccccgcgaaatttttgaattttgcgaataggcccaaccgcgaaatttaat
ccccgcgaaagtttatcccatttaAGTATAACGATATACATATACTGACT
TTGTAGGAGCTATGTTCCTTATTGTTCCTATTCATACAATCTTCGGGAAG
TTTTCAGTATTTACAGATTACATCACAGTTTTGTTTTCCTGAAATTCAAC
CTGCGAAAGAATTTTATCGCTTCTTTCGTTGGATTGTCTTGTTTCGGTAA
GTTTGGTGGTTTTTTGGCTAAgacatttttgataaatacttccttacgtc
ggaaatatccaaagaCAGtccagaaaaaaggaaaatatttgcTTCAACAA
TAAGTGAAATGTAAATACTCAAAAATACGTTACATTTCGATTTGATAGTC
TCTATCGCTTCTGTTAGTTTCGTGAGTTTTTTGGCAAAGACATTTTTAGT
AAGTACTTCCTTACGTCGGAGATATTGAAAACGGAAAACTGTCCAGCAAA
AAAGAAGATAATATTTGCCCAAAAAGTAAACATAGTGTGAAGACCTCACA
TTACGCTACAACAAAGGAACGGATACCACATTAGGCCCTTTTAAAGGTAA
ATCCACATGgaataaaaaaaagtaaggCCTGAAAGACCAGTATAAAAAGA
GGCCATTTTACTGACAGATTTAACTTTTCATCAAGAAGGGCTCCTTGTAG
ACTGGAAAAGAGAATCAACATTTTCAAGTAGAAGATCCCATCCAAAACAG
AGGTAATCTTTTGTTGTGTTTTCTTTTACTGAAACCggtaaattttggct
gaggtCAGTGGCGATGTGGCAGTGGGGGCCAGGGTGCCATGTCCCCtccc
cccagcggagcttttttgaaggggcgccgatGGGCAAGGGGCGCTAAAAG
AGATTTTTTctaacgccccaatcttaaaaattatatttcatgcgccttaa
attgcgccccaggaccaattttactgagataattttaaattacttgtatt
tttttcgctcgcaataaagttaattggtaagttctttgcaatctagctaa
tttacaatttttttgtgtacaatatagaaataccttaaaggaaccttttt
ttttgcgggaactagtttttgcggttcgcagttcaagatttaatatttaa
tatttgcgggaacttaattttgcggatttctcacttgaaagaaaattgga
GCCGTACTGTGAATTAATCGACCTTTGTTTTTCGCATTTGCAAAATTTTG
CGGGAGCTTAATTCTACGGTTTGGGCCTAAATccgcaaaaaccgcaaaat
ttagttcccgcaaaaattggttcccttaaggtattaaatgaaaatctaac
tgtgcttcaagaccaatttgctgacaacaatattgaaatcataaaacatc
aattttcatCAAACATCGCTTCGCTCACATTACACATTATTTCcttaaat
ttcttttcactctagcaagtgtcaaatttgtctatttgtCTATCTATCTT
GGCAGTccgccccaaccatggtggggcctgtttttcccttttccattcat
caaagatatatatACTCTTATCcgctaaatatttccttcctcgttatgcc
taggcaaatgaattagtaaaagtttagaaactgtTGGGTggccactttgg
aaaattgggggcaccatttaaaaataaattgacTTTGGGTCCTCCAGAAA
AACTTTCCCACAATGCCACTGGCCTGAGGCTTGATTGTCTTTAGTTTTCT
GGCTTGGATGCTCTTTTTAACCATTTAACTGTCGCTCGTATTTTTTAAGG
GTGTGACCTATATGCcacgaaaaaaatgaattttcgaCTTATTCCCAGAT
GTtgacatacatgttttttttataagcaagtgtatgccccttggtcaggc
tcgtgtatgcttaaagttctcaaagcatccaggcatagtttatgcttatt
atatgcttaagaatcatgcttatgattcaccccgagccaaagtttttaat
gaaatttcagaaattttgttaaAGTTTTGGTAGCAATggaatgatttatt
ttttacttgacctctaccaaacctatttaaacagataaaaatgaccactt
gaaaaatattttaggctgacatatatgctcatgttatgcttaaaggaatt
ctgcaaatctgagccttcatatgcttataagcgttatgcttataaaaaaa
acatatatgcCGACATGAGCGACCACCATGAGTTTACCATCACATCtagc
tttattttctgaaaaatatcagaaatataaGTGACATGTGTttactttga
gttgaaaaatgtataattgtgaaaaacatctttgaaatatatattttaat
tgATATTCAACTGTGCTATTTAATGAAATCtagttcaaaatcgaactttc
aatAAACGTTTTCAATAActtctggcaaataggtcgagatCTCTCTTGTT
GGCATTATGCCGACAGTGGTACGGAAAGGTTTAATGTAATTTATTCACTT
ATTGACTTGAAAGAGGCTTAAGATTGGCATTTTCGTAGCCTATTCACAGA
TCTGAGGCTGCGATTGTTCATATTCAAGAGAAATCGTATTTACATGCAAA
AACAAGAATTTCCGTCAAGCTATATTCACTCGGGAGATTTGGGTGCCAAA
ATTGCATatacaatttttctttttgggaTTCATCGGGATTTATcgggatt
tttgtattttgtccCAACaagcaaaaatccaaatttggcGACTTGAATTT
CTGACAATGGGAATTGTGATTATAAAGTGTTGCTGTCAGCTgtatttttc
accaaatttcaaTATTAGAATTTCGTTTCGTTTTAGTGATGGCGCAACCA
ACCAAGTCGTATACAGAAATagttgatattttcaaaaaaatcggTATCAA
CGATCCTGAAAAACTTTCGGACACTGACATCGTATCATTTGCCAAAAAAT
ATGCCGGTGGGGAGCTATCTGGTAACGATATCAAAATGTTCTGTGAAgtg
agaaagaaaaacaaaacatacgAAAAGTTACCTGTTCCTGATCTAGAAGA
AAATGCTCCTCTAACAAAGGAGCATTTTCAAGATCTTCCCAACCTTGATG
TCGACAGCAGATTGTCATTAATCCAAGGTGAGATCGATGAGGTAGGTCGT
CAACCAATCGACTTTTCAACGATGACTGCTGCGGATTGGATGAAAGTCAT
TGTAGACTGCAACATGATCTATGctcgaattttcaaaaatctaggtAGCG
GTTTGTCAGACCTTCCCACGGAACCAATGTTCTTTCCCCCGAACAAATCA
TTGTTTGGAACCCAAGATTTCAAAGTCTCCCAACATTCTTTGTTATACCG
CCAAAAATCTGAGCTTGCCgaacattttgatgaaaaagccGTCATAACAA
ATATCAAAGCTGGAGGCTCTTTCTCGTCGCCATATGTATCAGGAAGTGCT
GAATATTCACATGCAACACAAAATCGAACAGCTGAGAAAGATTCAAAGGT
TACATCTGTGTTCAAGGTTGAAAGTCCTGTCGGTGAATTCACTTTACCTT
CTCCATCGGAGTTGGCAGAATCTCAAATGAAGATCAACGACAACTTTGGG
AATTTTGTAAAAGATTACATTGAACAACACGAGGGCTGTTCAAAAGAAGA
AGTGGTCAAGGAAATGACCAGACGGTTTGGTGATGTCGTTCCTCGGAAGG
TGATAATTGGAGTTGCTTGCTATACAACACAAACGATTTCAATTAAAGAA
ACCCAAAGTCTCGAAACTGTCTCTGATTCCTTCAAGGCGAGTGTGACTGC
TTCATATGGCTGTTTTGGTGCAAGTGCCAACGCCGGTGGTGGTTCAAGCG
AATCGAGCGAATCAGGCGATAAAAGTCAAGAGAATAGCTATGCCTTTGCT
GCCATCGCTGGAAATCTTCCTGACCCAAGTAATCCGATGTCAATTGGTAA
TTATCGAAGTATACCGAGCAGTTGGAGGATCATTCATTTAGGAGATGAAT
TGACCCCAGTATACGATTATCTCAGCGGAGAAGCAAAAGATCAATTGAAC
AGCTGTAAGTATattctttcatttcttttttcaacCATTAAATCAATATA
CAGTAAacaactagccggtacccggcgtcgcacgccggtttaactgtttg
ctgaacgcatttaaagtcctttggatgttgggaaggtggcataaacacga
tgaaatcaaaattaaagagaagaattctctcaaagtttgactctatccct
cccgggtgacgtatcttttaaccatattttgaaaaagatttttgtggcaa
aaatgatcagaaaacagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTttaaacatggcagttt
gaaaaatcggaaaatcaaacttcagtcccactaagaatcggaaaaatagg
aaaatttcaactttttgccccagaaagatagaaatttggtcaaattagtt
ccaaaaagtgaattaaaattcacacaattatttcccttgtttcttctcct
ctttattctgctaagggtccgagggacaGGGTCGAAAtacagctcgcaac
catagtccccccggaaggcagctaggacacgcagacaaaaaagcgtgata
gcgcaattttatgttgctttttataaaataacttcgtcataacttcgata
acttttcaaattcaacgatgacttagatttacagcaaaataattatcgac
atagatgtttaaaggtaccttttacgaagaaagaactctagctttaccgc
cttttgaatgtatttttaatgttgctgttgttctagtaacaaacttgtct
tgcgatttttatgttttattttatatttgttcttttctttaacagattct
gtttaaaagatttgtttgttttgaaaagaattcgaatgtatcaaatcaaa
taaggtcgttaattacattcgaaaacataaaacaaaagaaaagaaagaaa
agaaagaaaaagtctaatctatcaatcaaaacaaagtctttataaaacgg
cgcgaatctgatttaacacatttgtggagcaagaagcaaaagtcatcttt
taaaagaacaaaacattgattgcgaaaacgaaagtgacacacaaaaaaca
aacaaacaacacatacagactacggctattaataaggacgaaatgcatat
gctgctctgccacccaaatctcctgaaagaagatagttggacagaaattc
tttgaatttcttcacatatatattcTTTTTTGAGATCATGCAGTGTTGAG
GCTTTCCTCCTTCTTGGTTCTCTTCAAAGCTTGACTCCAGAGGAGTCATT
CACATAATTCcctagggaatttccctttgtcCACTTCTTCTTTCAGTGTG
CGCCACAATTAGTTTTATGGCGTGATTCGATCTGCCTAGCCAGGGTGCTG
ACGAAGTCCTAATAAGGACAAAATGCATTTGCTGCTCTGCCatccaaatc
tcctgaaagaagatagttggacagaaattctttgaatttctttataTATA
AACAATAGATAGTTTTTTGCTCGTCATTTTCACTAGTGTAAGATATCAGC
CATATACGACAGTGTGTGAAATTCCTTTTTGATGACGCGCTGGTGGTTGG
TTTGATTTTAAAGCTGTGACTGTAAGGTTGTAGAACCAATATCACTTGTC
AAAGTTTCACGTCCGTAGCATTTTGCCATGTTGTGATTCACTGTCTGTAA
GATACAAGATACCGGCAGGAGGCAAAGAAGCACCCTAAAAAACATATTGC
ATTgcaaaatttgggcgaaaaagggggggggggtcctatcTTTTGTATTT
TATGGAATGATGACGTCTTCGGGTGACGATAATGCATATAAAATTGATCA
ATTCTTATTTTTAGTGGTTGGAGGTGATACCCTTTCCCAGTCTGAAATTT
TGGACCCAGGAAAGAAGAAAATATCAATGAATGGAAAATATGAGGTTTTT
ATGCGAGAAGACGGTAACTTACAAATCCTTGGTCCAAATGGCGACGCACT
ATGGGAAACTTTAACTTCATGTGACCCTGATCAGTTGAAAGGAGCTGTGT
TAGACGGCAATGGAAGAATGCTCGTTATTGACTTTGGTGGCCACACTCTC
TGGTCGAGTTCCGATGATCAACGGGATGCAGTATTCATTGTGATTGAATA
TGATGGGTACTGGAGAGGATATAATAAGAATGGGGAGGTTCTTTATCAAT
TtccagaaaattaagaaaactgAAATGTTAAGTTAAGCATTTTGTGACTA
CCAAAGTTtccaattatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019612-exon-sc0000332-1491911889:295511..295667 | TCONS_00019612-exon-sc0000332-1491911889:295511..295667 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1510915933:295511..295667 | TCONS_00019612-exon-sc0000332-1510915933:295511..295667 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1575043694:295511..295667 | TCONS_00019612-exon-sc0000332-1575043694:295511..295667 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1491911889:298897..300114 | TCONS_00019612-exon-sc0000332-1491911889:298897..300114 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1510915933:298897..300114 | TCONS_00019612-exon-sc0000332-1510915933:298897..300114 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1575043694:298897..300114 | TCONS_00019612-exon-sc0000332-1575043694:298897..300114 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1491911889:302375..302780 | TCONS_00019612-exon-sc0000332-1491911889:302375..302780 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1510915933:302375..302780 | TCONS_00019612-exon-sc0000332-1510915933:302375..302780 | Clytia hemisphaerica | exon |
| TCONS_00019612-exon-sc0000332-1575043694:302375..302780 | TCONS_00019612-exon-sc0000332-1575043694:302375..302780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:295511..302780 + |
Blast
The following BLAST results are available for this feature:
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