TCONS_00019575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019575
Unique NameTCONS_00019575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019575 ID=TCONS_00019575|Name=TCONS_00019575|organism=Clytia hemisphaerica|type=transcript|length=1843bp
AAAAAAAAGAAGAGATGCATGATCGGTTGAAGCAAAGGCTGCTCAATTAC
ATGTGCATCTTCTTTACATTGATGTGTTTTGGCAAGCTTTATCTGAGAGA
TAACTCAAAGGTCAATGATCACCAACATCTTGTGGGGGACTCATGGAGCC
TCAATGAACACGAAATACAAACCAACCTGGATAAAGAATACAATAGGCTT
AGAAGAAATCATGCTGCTAAGAAGCCAGcAGGCAATGTGAATAGCGAGGA
TGATGAAGATGATGGTGTTGATTATGGAGCACACAAATTAGCCATCATTG
TTCCATATCGAAATCGATTCGAAGAATTGAAAGACTTTGTGCCACACatg
aaaaaatatctaaaagaGAAGAAGATTCGAAATCATATTTATATCATCAA
CCAAGCTGACAACCACAGGTTTAACCGTGCATCATTGATCAACGTCGGCC
ACACCATCGCGTACAATGATAAATGTGACTATATGGCAATGCATGATGTC
GACCTTTTACCATTGAACAAGCAATTGAATTATGGGTACCCAGAATTGGG
ACCCTTTCACGTTGCAGGGCCCAATCTCCATCCAAAGTACCATTATGAGA
AGTTTGTCGGTGGTATTTTAATATTAACCATGACTCAATTCAACGAGTTG
AACGGAATGTCCAACAAGTTTTGGGGTTGGGGTCGTGAAGATGACGAATT
TTACATGCGAATGGTGGATTCCAATTACAAGattttccgcCATGGTAGTG
AGATTACGACAGGATACAACACATTTAAACACGAGCATTCTGTGGAACGA
AAACGAGATTACGCCAAATTACCCGGACAAAAGAAGTCGATGTTCAGTCG
TGATCACGACACCGGTTTATCGACCTTAGTGTACAACCAGAAGAAGCGAA
GTGAGTTCACTATCGATGGATACCCATGCACGGTCATCGATGTAGAATTG
GAATGTGACAAAAATCTCACTCCCTGGTGCGATGTGCCACCTGCcaagaa
aaaacgattttaggtataaatttttaacaaacgCTTAGAGTTTTATCCAA
TTTTAGTGCTAGAATTTTTACATTTATAGTCTTGACTTTACTTTAACCTG
CTTATTCTATCAACTGGATACTTTAAGTGGATTGCCGAATGACTAAAATG
CGTTTTTTAGCGAGGattgaatttgacaaatttaggtccccgtAAAAATT
TCCAGATTCGGCAATTCCCCAAATTAAAATCCTTGCTAAAAATGCATTtt
ggtcattcgccaaaattaaacccacgccaaaattaatccacaatcatatt
gtattgtattgtcTTATTTAATATCCCCTCTTGGAAAGGTTCTACTTTAT
ACCAAAGAGAGGATAGACGAAATAAAAGCACTCTTTTTACCCCAGGAAAT
TTCAGAATAGCTTgaacttttaaaaacttcatCAAAACTTCCCTGGATTG
GTCATCTGACCGCCTGGAGAAAACCGacacaaaaaaaacacattGGAAAA
AAACTTTCCGAAGAACCCCTGGAATTCCTCTTGTAAATGTTTCTGTTCAG
ATATAAATCTGAATGGCCCATTCTGTCCAGTCACAATTAATAACGTACAC
TATTTCTTATGtgatacaattttcaaacatttttatcTAGGCGTAATAAC
TTTTTATTGCAtgacattaaaaaagaaatttaattttcaaggtattaata
tttttaaagtATTCTGAATATTTTGTATTATTTATTGTGGATTATATAAA
TTATGATTTAAAGTAGACAAATTTATAAGGTAAACTAAACTATCTTTTGA
ATAGATTTTATTATACATAGATCAAGATGAGAAAATAGACGCG
Run BLAST on NCBI

transcript from alignment at sc0000331:264644..274074+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019575 ID=TCONS_00019575|Name=TCONS_00019575|organism=Clytia hemisphaerica|type=transcript|length=9431bp|location=Sequence derived from alignment at sc0000331:264644..274074+ (Clytia hemisphaerica)
AAAAAAAAGAAGAGATGCATGATCGGTTGAAGCAAAGGCTGCTCAATTAC
ATGTGCATCTTCTTTACATTGATGTGTTTTGGCAAGCTTTATCTGAGAGA
TAACTCAAAGGTCAATGATCACCAACATCTTGTGGGGGACTCATGGAGCC
TCAATGAACACGAAATACAAACCAACCTGGATAAAGAATACAATAGGCTT
AGAAGAAATCATGCTGCTAAGAAGCCAGGTACAGGATCGAACTGGTTCGG
ATAAAAATTATAATGTATTCAGTCCCTTGTCTGGTTATAATTAACATTTC
ATTTACTTTATTTGGAAAGTTTATAACTCATTTTGAGTAAAtacactaaa
gtctgtctcaatataatcttcaGAGGAGACAAAAAGGCTacgtaactttt
gatagaattctaATGAAATGGCGGTTTTGcacttgttgaaaagatataaa
gagatttcaaaaaaaaataagatgaaaaatgaagaagaggaAAAATCAAG
TTCTTGTAGGATTGTCCTATTATTTTAATATTAAGaaaatcttcaatctt
agagggttatcaatgtgaaaaaatacttcaaaaaatAGTAATAGTCAAAA
AATAAACCACTGTCTGGTTAACTAAAAAATGGgcttctttttgttgtttt
tacttttttaaagcCAATCAGTGATATactatatcttttgattgaattca
TATTTTTGAACAATCTTTTCATAGGGATATTCTAAGTAAGATCAAAGAAT
TactatattttgaaaatggaaattgCAGATGTTTTCTATTTAGTAATATT
TCACTcttaaatatcttttcaacaaacacaTAAACACTattcaattcaaa
ttctatcaaaaattacAGCCTTTTTTTCCCGCTGCTggttatattgagac
agactttacaaTTGAAATATAGGAATGGGTGTTTATGCAGGCTTGTATAA
AAATGTATACTGCTACTAATTGCTAAGAATTGGGTTTTTTaggagccatt
ttttttaaaaatcttcagaataaagaaagtctgatacctcaccctcttag
attttgatgaaattttgaccaaatgaccTATCACACATGAaaataagact
ctgaaaatttcaccttgatatctcaagtagttttgaagatacagcgtctc
aaagataggctactaagcgaaaattgacccctaaaaatcatgaNNNNNNN
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tattttcttgtgtgatagatcatttggtctaaatttcagcaaaatccaag
agggtgaggtatcacaccctgaagactcttaaaaaaaatggctcttgtCA
AGAACTCTTGCATCgaattgataaaattttaagaactcttgttgattttc
tttttccagcAGGCAATGTGAATAGCGAGGATGATGAAGATGATGGTGTT
GATTATGGAGCACACAAATTAGCCATCATTGTTCCATATCGAAATCGATT
CGAAGAATTGAAAGACTTTGTGCCACACatgaaaaaatatctaaaagaGA
AGAAGATTCGAAATCATATTTATATCATCAACCAAGCTGACAACCACAGG
TAGTTGAAAGAAATCTaatcatttgttttatcattttcatatcatttttt
ttatgagaccaattctataagaacaattttagacaGAAATtggttaaagt
agtaaaattcggccctaaaaaataaagatatgaTCAGTTACGATTTGAAG
GTAAAAGCGATGAGAGCAATTCAAAGCATATTTTGGTGGACAATAAAATC
AGTCGAGCCTTGGAAAATTTACTATTTTGTTGTTCAGAAATGAGTTAATG
ATTTCACACTCTTCAATTACATAAAGTTAAATCAAGAGAAAAGGTGTCTG
TCTtaaaatactttaggcgtacaaactttcgcaagcagaaattttcgcga
ggccgaaaaattgcgaaaattacaacatttactttcgcgaatttggtgaa
aaaaaaattttcgcgagcataaacttttgtgAATCGTTGggtaaaaatga
gaattttcgaataaaattgtcttaaaagtgaaaaatattccttaaatctg
ATAAAGACAGCTGCTCTTCGACTTTGAAAAGACAATAAAGGATAAGAATA
Ctgctgaaaatttgatatttattacgatttttaggttttatagatttcca
acttttttgagaattttttgcgagcataaacatAGTTCGGACTCCCCCCc
caaaattcgacaaaaaagccgtaatttttgaaaaaaaaattaattgaata
aaaatttatCGCTTGCTGAAAAGATAATCACGAGTGGGAAAAAAGTGTTC
TTCTTAACTGTATTAACattatgtttttcacacaactGTTAGTACATTTC
GTCTCCCCTTTAGATTCAATCGAAAGATATTACCTAAATACATCactaat
tttctttaaaaaccatCAAAACGACTAAAAAGACCTCATTCTGTAGTCAC
CCAAAAGTTTTGATCTGTCTTAATTTTAAATTAGTGATCATAGCACAATT
CTATATGAAGTAGTTTTCAGCtgaacttttcaactttttttgaatcattt
attttttataatttcccATTCTCCTAAAATATGTTTTCAACGAGCATCAA
ACACCTATCTAGTTCGAATTCCAACAGACGTTACAACCCTTTATATTTAT
ATGcggcaaattatattgagacaaaaGACTGACAATTCTTTATTGAATTG
ATTTTGACACGTACATCTTTGATCTTGATTGAAGGTTTAACCGTGCATCA
TTGATCAACGTCGGCCACACCATCGCGTACAATGATAAATGTGACTATAT
GGCAATGCATGATGTCGACCTTTTACCATTGAACAAGCAATTGAATTATG
GGTACCCAGAATTGGGACCCTTTCACGTTGCAGGGCCCAATCTCCATCCA
AAGTACCATTATGAGAAGTTTGTCGGTGGTATTTTAATATTAACCATGAC
TCAATTCAACGAGGTTTGTTATTCCTTTTCTATACCAGCATTACAAATGA
TTATGGTTTTGCTTTATTTGTCAGCacacttttttcataagaaccaatTA
CGTTTCGTTCTCTTTAAATGTTAGATTCTACCTCATTTTAGGGAAATTTT
CTCTTAGCCTTACTTACGTTCTTTTAAGATTGATATTATGAAGTGACTgt
ctctttataaaaaaaaactgactAAATGATGTTATGTGACTGTTATCTTT
AGTTGAACGGAATGTCCAACAAGTTTTGGGGTTGGGGTCGTGAAGATGAC
GAATTTTACATGCGAATGGTGGATTCCAATTACAAGGTAACAAGATTACT
TACCACTGTCGGTTGAAATATCTGCTGGGGTATAAATCAAACATTTTATC
TAATAAGTTTAATATCTGAACCTGTCATGCTCTTTCTGGTTATCAGTATT
AAAAGTTCCTTCCaccagacggatttccgtctccgCGAAGtcttttccgt
ctcaaaattctgcaccTGAATTTCCGCGGAGGGGGGGGTAAGgtaaaatc
ggaaaattttaaattagtttgaattataataagggtcggaaaagttatga
tttttaggaaagtttttaagcttttagtttgaggaaaagaaaatcaaaaa
aatctctaaaaggGTAAGGcgtatattttacaaaaatgtctatgggtcgg
ttttcggaggtcagAAAGTTGTTAAACCGTCACCTCCATCCTACAAAAct
tttcttgactttttttttcagattttccgcCATGGTAGTGAGATTACGAC
AGGATACAACACATTTAAACACGAGCATTCTGTGGAACGAAAACGAGATT
ACGCCAAATTACCCGGACAAAAGAAGGTACTCGGTTAACAAATTCTCCGA
AATGTTGTCATCATACTATTTTTCATTCATCCAAAACATACAATAACATA
CACTACCCccgtggaggtcctttaaattgaCCTTTGTTCGTTCGTGCGTT
AGTcaccagcttttctcaagattggcttattcaaattttctgatttttgg
caagGTGTatcaccctcgaatgtgacggagtcgATTTTCGGGggaaaaga
tttttgtataaatttcagccaaaaacagcgaaaaaacgggtttttttgga
ctttatgaaatattggatcattggatcattcTCTATAAGAATGGCTATTA
ATAAAAACggcatcaatgttcttagccaaattactcaattttttgataat
ataccggggcgccacaaaaaagtttctctctttgaaaccaaatttcttga
aatctaaaaattttaaaagaaccattcctatttcattggaaagaagaaag
atagacttaaattttgatgggtcatttattaaattcgattaattANNNNN
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gtcggttttttcgttcatgtttttgattttgctaaatttcaaccattttt
gaagaactgcacaaaatgcgtgttgactaactgacgtcaaataaaaactg
ctatgctcaattgaataaaaatgttactttcagaaagtgctccaaatcgt
taaaaatcgacatatcaaatttttactttaaatttggcaatcgcaatagc
ctttacacgattaaaagcatttttcattaactaaacagataaaatttgaa
acttaagggtcgaaagggtttaaaatcctcatcaaaattaatttaattta
gttttaccgaaattttcctgaGATTTTTGGTTTAGACtagataaagtcta
tgtaaggctggatctacctcgaaacccatatttgatgtatttttatgaat
tctactagattttttggcctttttcgacaaatttttttcctttcattgaa
attcaaccttcttttaaataacaaaaggtcatttagacagctaattatca
tttttaatgactgaaacgaaaatactgatataaaagaaccattcctattt
tattggaaagaagaaagataaacttgaTGGGTCTTTTATTGAATtagatt
cattagatcaaaagttatgctcaattgaataaaaaagttactttcagaaa
gtgctcaaaaacgttaaaaatcgacctatcaaattattcattgaaattca
accttcttttaaataacaaaaggtcatttagacagctaattatcattttt
aatgactgaaacgaaaatactgatatatcTAATTCAATAAAAGACCCAtc
aagtttatctttcttctttccaataaaataggaatggttcttttaaaata
tttagatttcgagaaaattacttttaaagagagaaacttttttgtggcgc
acccggtagatgttttttttgctcaagtcttgaatatgaaaaaatatttg
tgtctgagcatgaaattttggtttctaaaacgTATTTTCTGTGAGAAACA
AACGACGAATTTTAATATCGTCACTATCGTGTTCTGAACGATTGTTTAAA
GACTCCTTTTTGATAATCTTGAAGTCTGGgtaaaaagttacaaattttaT
CTAAATCGCTCTCTGATTTTTGGTTTCGCTTTGATCTAAAAAAAATGCTT
GGTTAAAAATCTAAGGGGAAGGGAGATTATTTAGATATGTTATTCgaata
ttctttttcatttacaGTCGATGTTCAGTCGTGATCACGACACCGGTTTA
TCGACCTTAGTGTACAACCAGAAGAAGCGAAGTGAGTTCACTATCGATGG
ATACCCATGCACGGTCATCGATGTAGAATTGGAATGTGACAAAAATCTCA
CTCCCTGGTGCGATGTGCCACCTGCcaagaaaaaacgattttaggtataa
atttttaacaaacgCTTAGAGTTTTATCCAATTTTAGTGCTAGAATTTTT
ACATTTTNTTTTTAACAAACGCTTAGAGTTTTATCCAATTTTAGTGCTAG
GATTTTTACATTTATAGTCTTGACTTTACTTTAACCTGCTTATTCTATCA
ACTGGATACTTTAAGTGGATTGCCGAATGACTAAAATGCGTTTTTTAGCG
AGGattgaatttgacaaatttaggtccccgtAAAAATTTCCAGATTCGGC
AATTCCCCAAATTAAAATCCTTGCTAAAAATGCATTttggtcattcgcca
aaattaaacccacgccaaaattaatccacaatcatattgtattgtattgt
cTTATTTAATATCCCCTCTTGGAAAGGTTCTACTTTATACCAAAGAGAGG
ATAGACGAAATAAAAGCACTCTTTTTACCCCAGGAAATTTCAGAATAGCT
TgaacttttaaaaacttcatCAAAACTTCCCTGGATTGGTCATCTGACCG
CCTGGAGAAAACCGacacaaaaaaaacacattGGAAAAAAACTTTCCGAA
GAACCCCTGGAATTCCTCTTGTAAATGTTTCTGTTCAGATATAAATCTGA
ATGGCCCATTCTGTCCAGTCACAATTAATAACGTACACTATTTCTTATGt
gatacaattttcaaacatttttatcTAGGCGTAATAACTTTTTATTGCAt
gacattaaaaaagaaatttaattttcaaggtattaatatttttaaagtAT
TCTGAATATTTTGTATTATTTATTGTGGATTATATAAATTATGATTTAAA
GTAGACAAATTTATAAGGTAAACTAAACTATCTTTTGAATAGATTTTATT
ATACATAGATCAAGATGAGAAAATAGACGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011005XLOC_011005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019575-exon-sc0000331-1491911889:264644..264871TCONS_00019575-exon-sc0000331-1491911889:264644..264871Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:264644..264871TCONS_00019575-exon-sc0000331-1510915933:264644..264871Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:264644..264871TCONS_00019575-exon-sc0000331-1575043694:264644..264871Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1491911889:268203..268392TCONS_00019575-exon-sc0000331-1491911889:268203..268392Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:268203..268392TCONS_00019575-exon-sc0000331-1510915933:268203..268392Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:268203..268392TCONS_00019575-exon-sc0000331-1575043694:268203..268392Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1491911889:269578..269806TCONS_00019575-exon-sc0000331-1491911889:269578..269806Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:269578..269806TCONS_00019575-exon-sc0000331-1510915933:269578..269806Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:269578..269806TCONS_00019575-exon-sc0000331-1575043694:269578..269806Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1491911889:270046..270129TCONS_00019575-exon-sc0000331-1491911889:270046..270129Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:270046..270129TCONS_00019575-exon-sc0000331-1510915933:270046..270129Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:270046..270129TCONS_00019575-exon-sc0000331-1575043694:270046..270129Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1491911889:270565..270669TCONS_00019575-exon-sc0000331-1491911889:270565..270669Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:270565..270669TCONS_00019575-exon-sc0000331-1510915933:270565..270669Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:270565..270669TCONS_00019575-exon-sc0000331-1575043694:270565..270669Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1491911889:273011..273245TCONS_00019575-exon-sc0000331-1491911889:273011..273245Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:273011..273245TCONS_00019575-exon-sc0000331-1510915933:273011..273245Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:273011..273245TCONS_00019575-exon-sc0000331-1575043694:273011..273245Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1491911889:273303..274074TCONS_00019575-exon-sc0000331-1491911889:273303..274074Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1510915933:273303..274074TCONS_00019575-exon-sc0000331-1510915933:273303..274074Clytia hemisphaericaexon
TCONS_00019575-exon-sc0000331-1575043694:273303..274074TCONS_00019575-exon-sc0000331-1575043694:273303..274074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:264644..274074 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00157968	0.000831694	0	0.00101018	0	0	0	0	6.02858e-05	1.20892e-08	1.7123e-06	0	0	3.04083e-10	0	0	0	0.000177721	0.485319	0	0.058439	1.33381	0.269593	0	0	0	0	0.141039	0.0789467	2.40899
Blast
[Close]
BLAST of TCONS_00019575 vs. Swiss-Prot (Human)
Match: B4GT7 (Beta-1,4-galactosyltransferase 7 OS=Homo sapiens GN=B4GALT7 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 6.720e-93
Identity = 132/239 (55.23%), Postives = 176/239 (73.64%), Query Frame = 3 
Query:  267 VDYGAHKLAIIVPYRNRFEELKDFVPHMKKYLKEKKIRNHIYIINQADNHRFNRASLINVGHTIAYNDKCDYMAMHDVDLLPLNKQLNYGYPELGPFHVAGPNLHPKYHYEKFVGGILILTMTQFNELNGMSNKFWGWGREDDEFYMRMVDSNYKIFRHGSEITTGYNTFKHEH-SVERKRDYAKLPGQKKSMFSRDHDTGLSTLVYNQKKRSEFTIDGYPCTVIDVELECDKNLTPWC 980
              +G H+LA++VP+R RFEEL  FVPHM+++L  KKIR+HIY++NQ D+ RFNRA+LINVG   + N   DY+AMHDVDLLPLN++L+YG+PE GPFHVA P LHP YHY+ +VGGIL+L+   +   NGMSN+FWGWGREDDEFY R+  +  ++FR  S ITTGY TF+H H    RKRD  ++  QK+  F  D + GL+T+ Y+   R+  ++ G PCTV+++ L+CDK  TPWC
Sbjct:   88 ASWGPHRLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST-DYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRP-SGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWC 324
The following BLAST results are available for this feature:
BLAST of TCONS_00019575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT76.720e-9355.23Beta-1,4-galactosyltransferase 7 OS=Homo sapiens G... [more]
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