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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019574 ID=TCONS_00019574|Name=TCONS_00019574|organism=Clytia hemisphaerica|type=transcript|length=1852bp gaaaaaaattgaaaaaaaaagaagagatgCATGATCGGTTGAAGCAAAGG CTGCTCAATTACATGTGCATCTTCTTTACATTGATGTGTTTTGGCAAGCT TTATCTGAGAGATAACTCAAAGGTCAATGATCACCAACATCTTGTGGGGG ACTCATGGAGCCTCAATGAACACGAAATACAAACCAACCTGGATAAAGAA TACAATAGGCTTAGAAGAAATCATGCTGCTAAGAAGCCAGGCAATGTGAA TAGCGAGGATGATGAAGATGATGGTGTTGATTATGGAGCACACAAATTAG CCATCATTGTTCCATATCGAAATCGATTCGAAGAATTGAAAGACTTTGTG CCACACatgaaaaaatatctaaaagaGAAGAAGATTCGAAATCATATTTA TATCATCAACCAAGCTGACAACCACAGGTTTAACCGTGCATCATTGATCA ACGTCGGCCACACCATCGCGTACAATGATAAATGTGACTATATGGCAATG CATGATGTCGACCTTTTACCATTGAACAAGCAATTGAATTATGGGTACCC AGAATTGGGACCCTTTCACGTTGCAGGGCCCAATCTCCATCCAAAGTACC ATTATGAGAAGTTTGTCGGTGGTATTTTAATATTAACCATGACTCAATTC AACGAGTTGAACGGAATGTCCAACAAGTTTTGGGGTTGGGGTCGTGAAGA TGACGAATTTTACATGCGAATGGTGGATTCCAATTACAAGattttccgcC ATGGTAGTGAGATTACGACAGGATACAACACATTTAAACACGAGCATTCT GTGGAACGAAAACGAGATTACGCCAAATTACCCGGACAAAAGAAGTCGAT GTTCAGTCGTGATCACGACACCGGTTTATCGACCTTAGTGTACAACCAGA AGAAGCGAAGTGAGTTCACTATCGATGGATACCCATGCACGGTCATCGAT GTAGAATTGGAATGTGACAAAAATCTCACTCCCTGGTGCGATGTGCCACC TGCcaagaaaaaacgattttaggtataaatttttaacaaacgCTTAGAGT TTTATCCAATTTTAGTGCTAGAATTTTTACATTTATAGTCTTGACTTTAC TTTAACCTGCTTATTCTATCAACTGGATACTTTAAGTGGATTGCCGAATG ACTAAAATGCGTTTTTTAGCGAGGattgaatttgacaaatttaggtcccc gtAAAAATTTCCAGATTCGGCAATTCCCCAAATTAAAATCCTTGCTAAAA ATGCATTttggtcattcgccaaaattaaacccacgccaaaattaatccac aatcatattgtattgtattgtcTTATTTAATATCCCCTCTTGGAAAGGTT CTACTTTATACCAAAGAGAGGATAGACGAAATAAAAGCACTCTTTTTACC CCAGGAAATTTCAGAATAGCTTgaacttttaaaaacttcatCAAAACTTC CCTGGATTGGTCATCTGACCGCCTGGAGAAAACCGacacaaaaaaaacac attGGAAAAAAACTTTCCGAAGAACCCCTGGAATTCCTCTTGTAAATGTT TCTGTTCAGATATAAATCTGAATGGCCCATTCTGTCCAGTCACAATTAAT AACGTACACTATTTCTTATGtgatacaattttcaaacatttttatcTAGG CGTAATAACTTTTTATTGCAtgacattaaaaaagaaatttaattttcaag gtattaatatttttaaagtATTCTGAATATTTTGTATTATTTATTGTGGA TTATATAAATTATGATTTAAAGTAGACAAATTTATAAGGTAAACTAAACT ATCTTTTGAATAGATTTTATTATACATAGATCAAGATGAGAAAATAGACG CG Run BLAST on NCBI transcript from alignment at sc0000331:264149..274074+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019574 ID=TCONS_00019574|Name=TCONS_00019574|organism=Clytia hemisphaerica|type=transcript|length=9926bp|location=Sequence derived from alignment at sc0000331:264149..274074+ (Clytia hemisphaerica) gaaaaaaattgaaaaaaaaagaagagatgCATGATCGGTTGAAGCAAAGG
CTGCTCAATTACATGTGCATCTTCTTTACATTGATGTGTTTTGGCAAGCT
TTATCTGAGAGATAACTCAAAGGTCAATGATCACCAACATCTTGTGGGGG
ACTCATGGAGCCTCAATGAACACGAAATACAAACCAACCTGGATAAAGAA
TACAATAGGCTTANCCTGAGAGATGACTCAAAGGTCAATGATCACCAACA
TCTTGTGGGGGACTCATGGAGCCTCAATGAACACGAAATACAAACCAACC
TGGATAAAGAATACAATAGGCTTAGAAGAAATCATGCTGCTAAGAAGCCA
GGTACAGGATCGAACTGGTTCGGATAAAAATTATTATGTATTCAGTCCCT
TGCCTGGTTATAATTAACATTTCATTTACTTTATTTGGAAAGTTTATAAC
TCATTTTGAGTAAAtacactaaagtctgtctcaatataatcttcNAAAAA
AAAGAAGAGATGCATGATCGGTTGAAGCAAAGGCTGCTCAATTACATGTG
CATCTTCTTTACATTGATGTGTTTTGGCAAGCTTTATCTGAGAGATAACT
CAAAGGTCAATGATCACCAACATCTTGTGGGGGACTCATGGAGCCTCAAT
GAACACGAAATACAAACCAACCTGGATAAAGAATACAATAGGCTTAGAAG
AAATCATGCTGCTAAGAAGCCAGGTACAGGATCGAACTGGTTCGGATAAA
AATTATAATGTATTCAGTCCCTTGTCTGGTTATAATTAACATTTCATTTA
CTTTATTTGGAAAGTTTATAACTCATTTTGAGTAAAtacactaaagtctg
tctcaatataatcttcaGAGGAGACAAAAAGGCTacgtaacttttgatag
aattctaATGAAATGGCGGTTTTGcacttgttgaaaagatataaagagat
ttcaaaaaaaaataagatgaaaaatgaagaagaggaAAAATCAAGTTCTT
GTAGGATTGTCCTATTATTTTAATATTAAGaaaatcttcaatcttagagg
gttatcaatgtgaaaaaatacttcaaaaaatAGTAATAGTCAAAAAATAA
ACCACTGTCTGGTTAACTAAAAAATGGgcttctttttgttgtttttactt
ttttaaagcCAATCAGTGATATactatatcttttgattgaattcaTATTT
TTGAACAATCTTTTCATAGGGATATTCTAAGTAAGATCAAAGAATTacta
tattttgaaaatggaaattgCAGATGTTTTCTATTTAGTAATATTTCACT
cttaaatatcttttcaacaaacacaTAAACACTattcaattcaaattcta
tcaaaaattacAGCCTTTTTTTCCCGCTGCTggttatattgagacagact
ttacaaTTGAAATATAGGAATGGGTGTTTATGCAGGCTTGTATAAAAATG
TATACTGCTACTAATTGCTAAGAATTGGGTTTTTTaggagccattttttt
taaaaatcttcagaataaagaaagtctgatacctcaccctcttagatttt
gatgaaattttgaccaaatgaccTATCACACATGAaaataagactctgaa
aatttcaccttgatatctcaagtagttttgaagatacagcgtctcaaaga
taggctactaagcgaaaattgacccctaaaaatcatgaNNNNNNNNNNNN
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tcttgtgtgatagatcatttggtctaaatttcagcaaaatccaagagggt
gaggtatcacaccctgaagactcttaaaaaaaatggctcttgtCAAGAAC
TCTTGCATCgaattgataaaattttaagaactcttgttgattttcttttt
ccagcAGGCAATGTGAATAGCGAGGATGATGAAGATGATGGTGTTGATTA
TGGAGCACACAAATTAGCCATCATTGTTCCATATCGAAATCGATTCGAAG
AATTGAAAGACTTTGTGCCACACatgaaaaaatatctaaaagaGAAGAAG
ATTCGAAATCATATTTATATCATCAACCAAGCTGACAACCACAGGTAGTT
GAAAGAAATCTaatcatttgttttatcattttcatatcattttttttatg
agaccaattctataagaacaattttagacaGAAATtggttaaagtagtaa
aattcggccctaaaaaataaagatatgaTCAGTTACGATTTGAAGGTAAA
AGCGATGAGAGCAATTCAAAGCATATTTTGGTGGACAATAAAATCAGTCG
AGCCTTGGAAAATTTACTATTTTGTTGTTCAGAAATGAGTTAATGATTTC
ACACTCTTCAATTACATAAAGTTAAATCAAGAGAAAAGGTGTCTGTCTta
aaatactttaggcgtacaaactttcgcaagcagaaattttcgcgaggccg
aaaaattgcgaaaattacaacatttactttcgcgaatttggtgaaaaaaa
aattttcgcgagcataaacttttgtgAATCGTTGggtaaaaatgagaatt
ttcgaataaaattgtcttaaaagtgaaaaatattccttaaatctgATAAA
GACAGCTGCTCTTCGACTTTGAAAAGACAATAAAGGATAAGAATACtgct
gaaaatttgatatttattacgatttttaggttttatagatttccaacttt
tttgagaattttttgcgagcataaacatAGTTCGGACTCCCCCCccaaaa
ttcgacaaaaaagccgtaatttttgaaaaaaaaattaattgaataaaaat
ttatCGCTTGCTGAAAAGATAATCACGAGTGGGAAAAAAGTGTTCTTCTT
AACTGTATTAACattatgtttttcacacaactGTTAGTACATTTCGTCTC
CCCTTTAGATTCAATCGAAAGATATTACCTAAATACATCactaattttct
ttaaaaaccatCAAAACGACTAAAAAGACCTCATTCTGTAGTCACCCAAA
AGTTTTGATCTGTCTTAATTTTAAATTAGTGATCATAGCACAATTCTATA
TGAAGTAGTTTTCAGCtgaacttttcaactttttttgaatcatttatttt
ttataatttcccATTCTCCTAAAATATGTTTTCAACGAGCATCAAACACC
TATCTAGTTCGAATTCCAACAGACGTTACAACCCTTTATATTTATATGcg
gcaaattatattgagacaaaaGACTGACAATTCTTTATTGAATTGATTTT
GACACGTACATCTTTGATCTTGATTGAAGGTTTAACCGTGCATCATTGAT
CAACGTCGGCCACACCATCGCGTACAATGATAAATGTGACTATATGGCAA
TGCATGATGTCGACCTTTTACCATTGAACAAGCAATTGAATTATGGGTAC
CCAGAATTGGGACCCTTTCACGTTGCAGGGCCCAATCTCCATCCAAAGTA
CCATTATGAGAAGTTTGTCGGTGGTATTTTAATATTAACCATGACTCAAT
TCAACGAGGTTTGTTATTCCTTTTCTATACCAGCATTACAAATGATTATG
GTTTTGCTTTATTTGTCAGCacacttttttcataagaaccaatTACGTTT
CGTTCTCTTTAAATGTTAGATTCTACCTCATTTTAGGGAAATTTTCTCTT
AGCCTTACTTACGTTCTTTTAAGATTGATATTATGAAGTGACTgtctctt
tataaaaaaaaactgactAAATGATGTTATGTGACTGTTATCTTTAGTTG
AACGGAATGTCCAACAAGTTTTGGGGTTGGGGTCGTGAAGATGACGAATT
TTACATGCGAATGGTGGATTCCAATTACAAGGTAACAAGATTACTTACCA
CTGTCGGTTGAAATATCTGCTGGGGTATAAATCAAACATTTTATCTAATA
AGTTTAATATCTGAACCTGTCATGCTCTTTCTGGTTATCAGTATTAAAAG
TTCCTTCCaccagacggatttccgtctccgCGAAGtcttttccgtctcaa
aattctgcaccTGAATTTCCGCGGAGGGGGGGGTAAGgtaaaatcggaaa
attttaaattagtttgaattataataagggtcggaaaagttatgattttt
aggaaagtttttaagcttttagtttgaggaaaagaaaatcaaaaaaatct
ctaaaaggGTAAGGcgtatattttacaaaaatgtctatgggtcggttttc
ggaggtcagAAAGTTGTTAAACCGTCACCTCCATCCTACAAAActtttct
tgactttttttttcagattttccgcCATGGTAGTGAGATTACGACAGGAT
ACAACACATTTAAACACGAGCATTCTGTGGAACGAAAACGAGATTACGCC
AAATTACCCGGACAAAAGAAGGTACTCGGTTAACAAATTCTCCGAAATGT
TGTCATCATACTATTTTTCATTCATCCAAAACATACAATAACATACACTA
CCCccgtggaggtcctttaaattgaCCTTTGTTCGTTCGTGCGTTAGTca
ccagcttttctcaagattggcttattcaaattttctgatttttggcaagG
TGTatcaccctcgaatgtgacggagtcgATTTTCGGGggaaaagattttt
gtataaatttcagccaaaaacagcgaaaaaacgggtttttttggacttta
tgaaatattggatcattggatcattcTCTATAAGAATGGCTATTAATAAA
AACggcatcaatgttcttagccaaattactcaattttttgataatatacc
ggggcgccacaaaaaagtttctctctttgaaaccaaatttcttgaaatct
aaaaattttaaaagaaccattcctatttcattggaaagaagaaagataga
cttaaattttgatgggtcatttattaaattcgattaattANNNNNNNNNN
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ttttttcgttcatgtttttgattttgctaaatttcaaccatttttgaaga
actgcacaaaatgcgtgttgactaactgacgtcaaataaaaactgctatg
ctcaattgaataaaaatgttactttcagaaagtgctccaaatcgttaaaa
atcgacatatcaaatttttactttaaatttggcaatcgcaatagccttta
cacgattaaaagcatttttcattaactaaacagataaaatttgaaactta
agggtcgaaagggtttaaaatcctcatcaaaattaatttaatttagtttt
accgaaattttcctgaGATTTTTGGTTTAGACtagataaagtctatgtaa
ggctggatctacctcgaaacccatatttgatgtatttttatgaattctac
tagattttttggcctttttcgacaaatttttttcctttcattgaaattca
accttcttttaaataacaaaaggtcatttagacagctaattatcattttt
aatgactgaaacgaaaatactgatataaaagaaccattcctattttattg
gaaagaagaaagataaacttgaTGGGTCTTTTATTGAATtagattcatta
gatcaaaagttatgctcaattgaataaaaaagttactttcagaaagtgct
caaaaacgttaaaaatcgacctatcaaattattcattgaaattcaacctt
cttttaaataacaaaaggtcatttagacagctaattatcatttttaatga
ctgaaacgaaaatactgatatatcTAATTCAATAAAAGACCCAtcaagtt
tatctttcttctttccaataaaataggaatggttcttttaaaatatttag
atttcgagaaaattacttttaaagagagaaacttttttgtggcgcacccg
gtagatgttttttttgctcaagtcttgaatatgaaaaaatatttgtgtct
gagcatgaaattttggtttctaaaacgTATTTTCTGTGAGAAACAAACGA
CGAATTTTAATATCGTCACTATCGTGTTCTGAACGATTGTTTAAAGACTC
CTTTTTGATAATCTTGAAGTCTGGgtaaaaagttacaaattttaTCTAAA
TCGCTCTCTGATTTTTGGTTTCGCTTTGATCTAAAAAAAATGCTTGGTTA
AAAATCTAAGGGGAAGGGAGATTATTTAGATATGTTATTCgaatattctt
tttcatttacaGTCGATGTTCAGTCGTGATCACGACACCGGTTTATCGAC
CTTAGTGTACAACCAGAAGAAGCGAAGTGAGTTCACTATCGATGGATACC
CATGCACGGTCATCGATGTAGAATTGGAATGTGACAAAAATCTCACTCCC
TGGTGCGATGTGCCACCTGCcaagaaaaaacgattttaggtataaatttt
taacaaacgCTTAGAGTTTTATCCAATTTTAGTGCTAGAATTTTTACATT
TTNTTTTTAACAAACGCTTAGAGTTTTATCCAATTTTAGTGCTAGGATTT
TTACATTTATAGTCTTGACTTTACTTTAACCTGCTTATTCTATCAACTGG
ATACTTTAAGTGGATTGCCGAATGACTAAAATGCGTTTTTTAGCGAGGat
tgaatttgacaaatttaggtccccgtAAAAATTTCCAGATTCGGCAATTC
CCCAAATTAAAATCCTTGCTAAAAATGCATTttggtcattcgccaaaatt
aaacccacgccaaaattaatccacaatcatattgtattgtattgtcTTAT
TTAATATCCCCTCTTGGAAAGGTTCTACTTTATACCAAAGAGAGGATAGA
CGAAATAAAAGCACTCTTTTTACCCCAGGAAATTTCAGAATAGCTTgaac
ttttaaaaacttcatCAAAACTTCCCTGGATTGGTCATCTGACCGCCTGG
AGAAAACCGacacaaaaaaaacacattGGAAAAAAACTTTCCGAAGAACC
CCTGGAATTCCTCTTGTAAATGTTTCTGTTCAGATATAAATCTGAATGGC
CCATTCTGTCCAGTCACAATTAATAACGTACACTATTTCTTATGtgatac
aattttcaaacatttttatcTAGGCGTAATAACTTTTTATTGCAtgacat
taaaaaagaaatttaattttcaaggtattaatatttttaaagtATTCTGA
ATATTTTGTATTATTTATTGTGGATTATATAAATTATGATTTAAAGTAGA
CAAATTTATAAGGTAAACTAAACTATCTTTTGAATAGATTTTATTATACA
TAGATCAAGATGAGAAAATAGACGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00019574-exon-sc0000331-1491911889:264149..264356 | TCONS_00019574-exon-sc0000331-1491911889:264149..264356 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:264149..264356 | TCONS_00019574-exon-sc0000331-1510915933:264149..264356 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:264149..264356 | TCONS_00019574-exon-sc0000331-1575043694:264149..264356 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:264468..264499 | TCONS_00019574-exon-sc0000331-1491911889:264468..264499 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:264468..264499 | TCONS_00019574-exon-sc0000331-1510915933:264468..264499 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:264468..264499 | TCONS_00019574-exon-sc0000331-1575043694:264468..264499 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:268206..268392 | TCONS_00019574-exon-sc0000331-1491911889:268206..268392 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:268206..268392 | TCONS_00019574-exon-sc0000331-1510915933:268206..268392 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:268206..268392 | TCONS_00019574-exon-sc0000331-1575043694:268206..268392 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:269578..269806 | TCONS_00019574-exon-sc0000331-1491911889:269578..269806 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:269578..269806 | TCONS_00019574-exon-sc0000331-1510915933:269578..269806 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:269578..269806 | TCONS_00019574-exon-sc0000331-1575043694:269578..269806 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:270046..270129 | TCONS_00019574-exon-sc0000331-1491911889:270046..270129 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:270046..270129 | TCONS_00019574-exon-sc0000331-1510915933:270046..270129 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:270046..270129 | TCONS_00019574-exon-sc0000331-1575043694:270046..270129 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:270565..270669 | TCONS_00019574-exon-sc0000331-1491911889:270565..270669 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:270565..270669 | TCONS_00019574-exon-sc0000331-1510915933:270565..270669 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:270565..270669 | TCONS_00019574-exon-sc0000331-1575043694:270565..270669 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:273011..273245 | TCONS_00019574-exon-sc0000331-1491911889:273011..273245 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:273011..273245 | TCONS_00019574-exon-sc0000331-1510915933:273011..273245 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:273011..273245 | TCONS_00019574-exon-sc0000331-1575043694:273011..273245 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1491911889:273303..274074 | TCONS_00019574-exon-sc0000331-1491911889:273303..274074 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1510915933:273303..274074 | TCONS_00019574-exon-sc0000331-1510915933:273303..274074 | Clytia hemisphaerica | exon |
TCONS_00019574-exon-sc0000331-1575043694:273303..274074 | TCONS_00019574-exon-sc0000331-1575043694:273303..274074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000331 | supercontig | sc0000331:264149..274074 + |
Blast
BLAST of TCONS_00019574 vs. Swiss-Prot (Human)
Match: B4GT7 (Beta-1,4-galactosyltransferase 7 OS=Homo sapiens GN=B4GALT7 PE=1 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 5.103e-93 Identity = 132/239 (55.23%), Postives = 176/239 (73.64%), Query Frame = 3
Query: 276 VDYGAHKLAIIVPYRNRFEELKDFVPHMKKYLKEKKIRNHIYIINQADNHRFNRASLINVGHTIAYNDKCDYMAMHDVDLLPLNKQLNYGYPELGPFHVAGPNLHPKYHYEKFVGGILILTMTQFNELNGMSNKFWGWGREDDEFYMRMVDSNYKIFRHGSEITTGYNTFKHEH-SVERKRDYAKLPGQKKSMFSRDHDTGLSTLVYNQKKRSEFTIDGYPCTVIDVELECDKNLTPWC 989
+G H+LA++VP+R RFEEL FVPHM+++L KKIR+HIY++NQ D+ RFNRA+LINVG + N DY+AMHDVDLLPLN++L+YG+PE GPFHVA P LHP YHY+ +VGGIL+L+ + NGMSN+FWGWGREDDEFY R+ + ++FR S ITTGY TF+H H RKRD ++ QK+ F D + GL+T+ Y+ R+ ++ G PCTV+++ L+CDK TPWC
Sbjct: 88 ASWGPHRLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST-DYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRP-SGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWC 324
The following BLAST results are available for this feature:
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