TCONS_00019570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019570
Unique NameTCONS_00019570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019570 ID=TCONS_00019570|Name=TCONS_00019570|organism=Clytia hemisphaerica|type=transcript|length=1135bp
ttaagattggaaagaaaaaatagTGAGAATGTTTCAAtacaaaaaagcag
tttgtcgAAAAATCCCAAGGTCCATCGTTGATGGAGGGATTCGAATGGAG
AAAGAGGAGAAGCCGTTAGATTATGATTTAGCTGTCCAACAACATGATGA
TATGGTGAAAGCTCTGGAAAGCCTCGGTGTTGATGTCACCGTATTGGAAA
CAGATGAATCGACACCTGATTGTGTTTTTGTTGAGGATCCAGCTGTTATT
ATCGGCGATACTGTCTTAATCACCAACCCAGGCGCTGATTCCAGAAAGCC
AGAAACTAAGAtcatgaaagaatatttcaagacgAACGAACCGCATTTGA
AAATCGTTGAAATGGAATCGCCAGCTACACTTGATGGTGGTGACGTCATG
TTTACTGGTCGTGAAATCTTTGTTGGACAATCGAGGCGAACAAATGAAGC
TGGTTATTTGAGACTAAAAGAAGCTTTTCCAAATTATCCAGTACATTTAG
TGGCCATACAAAATGAGACATTACATTTGAAGTCAATGATGACAATGGGA
GATGAAGATGTGATTTTATGTGGAAGTTCACCTGATGCTTCCGCTGCTAT
CGAAATCGTTCAAGAAAAGGCGAGCCATTTATACAGTGTGATACGGACAC
CTGAAGATAGTGGCGCCAATGTTGTCATTGTGAATGGTACCATTTTGAGA
CGTTCAGATTTATCGAAGAGTGCTCAAGTTGTATCCAAATTATCCATTCC
AAAAATCGATTTAAATGCATCAGAATTGAGTAAAGTTGATGGATGTTTGA
CTTGCTGTTCTTTGCTTTATAACTGaacgatttttttaatttattttgaa
ttctttGAGTTTATTATAATACACTGATGATTACCTTCGATGTTTGCCGA
CCCGGGGATACTATGGAAAGTGTAGGCTACTTGAAACTAcgtttattaga
aagaggatatggtctaactttgttttttttctcgatattttCTGTCTAAC
GCGACAATCTGCAAGtcatttagctCATATTTTCGATTTCGCTCgtgaaa
aagattctaaaaaaatcaaaacactaTGGAAGTaacaactttaaaaaata
tatcaagaaaatatttttacttaatTATATGCTAG
Run BLAST on NCBI

protein sequence of TCONS_00019570-protein

>TCONS_00019570-protein ID=TCONS_00019570-protein|Name=TCONS_00019570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MFQYKKAVCRKIPRSIVDGGIRMEKEEKPLDYDLAVQQHDDMVKALESLG
VDVTVLETDESTPDCVFVEDPAVIIGDTVLITNPGADSRKPETKIMKEYF
KTNEPHLKIVEMESPATLDGGDVMFTGREIFVGQSRRTNEAGYLRLKEAF
PNYPVHLVAIQNETLHLKSMMTMGDEDVILCGSSPDASAAIEIVQEKASH
LYSVIRTPEDSGANVVIVNGTILRRSDLSKSAQVVSKLSIPKIDLNASEL
SKVDGCLTCCSLLYN
Run BLAST on NCBI

transcript from alignment at sc0000331:151467..153211+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019570 ID=TCONS_00019570|Name=TCONS_00019570|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at sc0000331:151467..153211+ (Clytia hemisphaerica)
ttaagattggaaagaaaaaatagTGAGAATGTTTCAAtacaaaaaagcag
tttgtcgAAAAATCCCAAGGTCCATCGTTGATGGAGGGATTCGAATGGAG
AAAGAGGAGAAGCCGTTAGATTATGATTTAGCTGTCCAACAACATGATGA
TATGGTGAAAGCTCTGGAAAGCCTCGGTGTTGATGTCACCGTATTGGAAA
CAGATGAATCGACACCTGATTGTGTTTTTGTTGAGGATCCAGCTGTTATT
ATCGGCGATACTGTCTTAATCACCAACCCAGGCGCTGATTCCAGAAAGCC
AGAAACTAAGAtcatgaaagaatatttcaagacgAACGAACCGCATTTGA
AAATCGTTGAAATGGAATCGCCAGCTACACTTGATGGTGGTGACGTCATG
TTTACTGGTCGTGAAATCTTTGTTGGACAATCGAGGCGAACAAATGAAGC
TGGTTATTTGAGACTAAAAGAAGCTTTTCCAAATTATCCAGTACATTTAG
TGGCCATACAAAATGAGACATTACATTTGAAGTCAATGATGACAATGGGA
GATGAAGATGTGATTTTATGTGGAAGTTCACCTGATGCTTCCGCTGCTAT
CGAAATCGTTCAAGAAAAGGCGAGCCATTTATACAGTGTGATACGGACAC
CTGAAGATAGTGGCGCCAATGTTGTCATTGTGAATGGTACCATTTTGAGA
CGTTCAGATTTATCGAAGAGTGCTCAAGTTGTATCCAAATTATCCATTCC
AAAAATCGATTTAAATGCATCAGAATTGAGTAAAGTTGATGGATGTTTGA
CTTGCTGTTCTTTGCTTTATAACTGaacgatttttttaatttattttgaa
ttctttGAGTTTATTATAATACACTGATGATTACCTTCGATGTTTGCCGA
CCCGGGGATACTATGGAAAGTGTAGGCTACTTGAAACTAcgtttattaga
aagaggatatggtctaactttgttttttttctcgatattttCTGTCTAAC
GCGACAATCTGCAAGtcaattaaagtctattcacgataagtgtgcactct
tttttcattaacctataacttttgaaggaattcttcaatctttataaatt
tggtatcattggaaagatattaacgagtggaacaatttgaaataaaaaaa
tctttaaaaaaattctgaaattgaagatgaaaatgaagaagaaaaaattg
aagatcttgtagagaagtgctataactttcattttcactggagtgaatcc
ttgatcttaggaagtcatcactgtgaagaaattttactaaaatatttatt
caatataaagttatgatacaaagttgataagtgattgaccccaaaaaaca
gcagaaaacagcagaaatcagcgtttttagacttcaatcagcttatacgt
ttgtttgatatcttttgactgaatgattattttagagaaattttttcaca
gtgatgacgttcgataatcaaggtttcacttcagtgaaaatgatagttat
agcacttttctacaagatcttcattNNTACTAATGTCTTTCAAATGatgc
caaatttataaagattgaagaattccttcaatagttataggtaaatgaaa
aaagagtgcacacttatcgtgaatagactttagctCATATTTTCGATTTC
GCTCgtgaaaaagattctaaaaaaatcaaaacactaTGGAAGTaacaact
ttaaaaaatatatcaagaaaatatttttacttaatTATATGCTAG

Coding sequence (CDS) from alignment at sc0000331:151467..153211+

>TCONS_00019570 ID=TCONS_00019570|Name=TCONS_00019570|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0000331:151467..153211+ (Clytia hemisphaerica)
ATGTTTCAAtacaaaaaagcagtttgtcgAAAAATCCCAAGGTCCATCGT
TGATGGAGGGATTCGAATGGAGAAAGAGGAGAAGCCGTTAGATTATGATT
TAGCTGTCCAACAACATGATGATATGGTGAAAGCTCTGGAAAGCCTCGGT
GTTGATGTCACCGTATTGGAAACAGATGAATCGACACCTGATTGTGTTTT
TGTTGAGGATCCAGCTGTTATTATCGGCGATACTGTCTTAATCACCAACC
CAGGCGCTGATTCCAGAAAGCCAGAAACTAAGAtcatgaaagaatatttc
aagacgAACGAACCGCATTTGAAAATCGTTGAAATGGAATCGCCAGCTAC
ACTTGATGGTGGTGACGTCATGTTTACTGGTCGTGAAATCTTTGTTGGAC
AATCGAGGCGAACAAATGAAGCTGGTTATTTGAGACTAAAAGAAGCTTTT
CCAAATTATCCAGTACATTTAGTGGCCATACAAAATGAGACATTACATTT
GAAGTCAATGATGACAATGGGAGATGAAGATGTGATTTTATGTGGAAGTT
CACCTGATGCTTCCGCTGCTATCGAAATCGTTCAAGAAAAGGCGAGCCAT
TTATACAGTGTGATACGGACACCTGAAGATAGTGGCGCCAATGTTGTCAT
TGTGAATGGTACCATTTTGAGACGTTCAGATTTATCGAAGAGTGCTCAAG
TTGTATCCAAATTATCCATTCCAAAAATCGATTTAAATGCATCAGAATTG
AGTAAAGTTGATGGATGTTTGACTTGCTGTTCTTTGCTTTATAACTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011002XLOC_011002Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019570-proteinTCONS_00019570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019570-exon-sc0000331-1491911889:151467..152484TCONS_00019570-exon-sc0000331-1491911889:151467..152484Clytia hemisphaericaexon
TCONS_00019570-exon-sc0000331-1510915933:151467..152484TCONS_00019570-exon-sc0000331-1510915933:151467..152484Clytia hemisphaericaexon
TCONS_00019570-exon-sc0000331-1575043694:151467..152484TCONS_00019570-exon-sc0000331-1575043694:151467..152484Clytia hemisphaericaexon
TCONS_00019570-exon-sc0000331-1491911889:153095..153211TCONS_00019570-exon-sc0000331-1491911889:153095..153211Clytia hemisphaericaexon
TCONS_00019570-exon-sc0000331-1510915933:153095..153211TCONS_00019570-exon-sc0000331-1510915933:153095..153211Clytia hemisphaericaexon
TCONS_00019570-exon-sc0000331-1575043694:153095..153211TCONS_00019570-exon-sc0000331-1575043694:153095..153211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:151467..153211 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163491	0.0799399	0.556801	0.230303	1.47986	1.7539	5.10203	6.12663	13.5294	5.29461	11.86	7.58125	6.35305	7.76743	9.62734	8.63923	21.8605	16.57	1.37083	1.41057	10.2528	9.62127	13.2796	12.8907	5.30333	4.32701	22.2063	16.9099	37.0739	28.677
Blast
[Close]
BLAST of TCONS_00019570 vs. Swiss-Prot (Human)
Match: DDAH1 (N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Homo sapiens GN=DDAH1 PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 4.371e-54
Identity = 119/269 (44.24%), Postives = 160/269 (59.48%), Query Frame = 2 
Query:   47 AVCRKIPRSIVDGGIRMEKEEKPLDYDLAVQQHDDMVKALES-LGVDVTVLETDESTPDCVFVEDPAVIIGDTVLITNPGADSRKPETKIMKEYFKTNEPHLKIVEM-ESPATLDGGDVMFTGREIFVGQSRRTNEAGYLRLKEAFPNYPVHLVAIQNETLHLKSMMTMGDEDVILCGSSPDASAAIEIVQEKASHLYSVIRTPEDSGANVVIVN-----GTILRRS--DLSKSAQVVSKLSIPK-IDLNASELSKVDGCLTCCSLLYN 823
            AV R +P S+    +R  K E+ +D   A +QH   V  L S LG+ V  L  DES PDCVFVED AV+  +T LIT PGA SR+ E  +MKE  +  +  L IVEM +  ATLDGGDV+FTGRE FVG S+RTN+ G   L + F +Y V  V + +  LHLKS  +M   ++I  GSS  A  A++I+Q+ + H Y  +  P+D  AN + +N       +L R+  +  +SA+V  KL     I ++ SEL KVDG LTCCS+L N
Sbjct:   16 AVVRALPESLGQHALRSAKGEE-VDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQ--LNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD-GLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSVLIN 280
The following BLAST results are available for this feature:
BLAST of TCONS_00019570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDAH14.371e-5444.24N(G),N(G)-dimethylarginine dimethylaminohydrolase ... [more]
back to top