TCONS_00019526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019526
Unique NameTCONS_00019526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019526 ID=TCONS_00019526|Name=TCONS_00019526|organism=Clytia hemisphaerica|type=transcript|length=1533bp
CTAACAATttaaggctcaaagtgccaaaagatAAGGATAGCCGATTCTGA
ACAGAATTTtactgtttcttataaaaaaaagcgtaaGTGAAGACATGCCG
GACAGGGTTGtggcaaaattttcagattataGGAAGTATCTTTGTCACAA
ACGACTATTGTTGTTCTTTCAACAGGTGGACGTGATGGGTTGATGACACT
GAACAATGTGGAATGTTTCGATCCCAAAACACAGAAGTGGGAAAACATCA
CACCCATGCTAACACATCGTCATGGTTTGGGTGTGGCTGTACTTTCAGGC
CCCATCTATGCCGTAGGTGGACACGATGGATGGTCTTATCTCAGCACTGT
GGAAAGATATGATCCAGTGACAGGACAATGGAGTTTCGTTGCTCCCATGA
CTACACCACGAAGCACGGTGGGAGTTGCTGTTCTCCATAACAAGCTGTAT
GCAGTGGGTGGACGTGATGGGTCCTCGTGTTTGAGTTCTGTCGAAGTGTA
CGACCCGCACACCAACAAGTGGAGTTTGGCTGCTCCCATGATCAAGCGGA
GAGGAGGTGTGGGTGTGTCAGTACTTCGTGGACACCTCTATGCAGCTGGA
GGTCACGATGCTCCTGCCAGCTCCGATTACTCCAAACAATTTTCATCGGT
TGAAAGATATGACCCGCGCATCGATCATTGGTGTTTGATTTCTTCCATGA
AAAATTGTCGAGACGCGGTAGGGATGGCGGCGCTCGGTGATCGTTTGTAC
TCAGTTGGAGGGTATGATGGCAACTCATATTTAGATGCTGTTGAAGCTTA
CGATGCAGATTCGAACGATTGGCAATCGGTGGCGCCCTTAACACACCCGC
GGGCCGGCGCCTGTGTTGTGGCGTTAAAACTTTAAAGACTTTCAACTTCA
ATGACTTACATATTTCGCCAATCTCATGAAATTGATAGAGTACCTTTAAA
ATACGCTACATAAAGCTATTCTGGTTTTGCAGAATGTTCACTTACCTTAT
CATCTTGTATAAATTGCTTTCTAGATCTACTGTATTTAAAAGGGagttta
ttttgttatactACGCATTTGATTCATAGAATCTTTATAAGTTAAACCAT
ATCTTGCTATGGATAAGGTGTGAAATTTGATTCTCGTTCATTGAAAATGA
TCTTTTCAAAACTGTCATCGCCTGACATACATATCACTCGTCTATAAATC
TTGTTTGTGATACCCATGGTCTTCCTTTCACGCTTTACTTCCACTTTTTC
GCTCGttgttgtatttttttatttataaagttttgtaAGGATGACGCATA
TATACTTAACTTGTACAAATGAAGTAGATATAATAATCATAATGAAGATA
GAATGTATATATTTACATATAACAAGTAGTTGTGATTTCTTTTGTGGACA
TTTTCAATCTCCGTTATAACACGCTGTTCACCGCACTTTTGTTTCACATA
CTAAACTTATCCGATCAGCCCCTTCCAACTTTTGTTTGTAAAGTAAACAA
ATAGTCAAGTGAGTCCTGCATAGACAAAAcatt
Run BLAST on NCBI

transcript from alignment at sc0000329:46824..51062-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019526 ID=TCONS_00019526|Name=TCONS_00019526|organism=Clytia hemisphaerica|type=transcript|length=4239bp|location=Sequence derived from alignment at sc0000329:46824..51062- (Clytia hemisphaerica)
CTAACAATTTAAGGCTCAAAGTGCCAAAAGATAAGGATAGCCGATTCTGA
ACAGAATTTTACTGTTTCTTATAAAAAAAAGCGTAAGTGAAGACATGCCG
GACAGGGTTGTGGCAAAATTTTCAGATTATAGGAAGTATCTTTGTCACAA
ACGACTATTGTTGTTCTTTCAACAGGTGGACGTGATGGGTTGATGACACT
GAACAATGTGGAATGTTTCGATCCCAAAACACAGAAGTGGGAAAACATCA
CACCCATGCTAACACATCGTCATGGTTTGGGTGTGGCTGTACTTTCAGGC
CCCATCTATGCCGTAGGTGGACACGATGGATGGTCTTATCTCAGCACTGT
GGAAAGGTGAATAAAACTGCTCCTCTCATTTTCAAGAAGTTAATGCGTCT
TCTCTGTAACGTTTACAAATGNACTGCTCCTCTCATTTTCAATAAGTTAA
TGCGTCTTCTCTGTAACGTTTACAAATGAAATCTTTTATAATATCATTAT
ATTCGACACTTGGTCTAACTTTTTTTTATTGTTGAACGACTGACCCTTCT
TTTTGATTAGTGGCGTGGCTTATATCAAATCAACTTAGTAGTTTTGCCTT
CAAAAACATCCTTCGAATATACCTTTACAATACCAGAGCGTGTTTGCTTT
CATTAGATATGATCCAGTGACAGGACAATGGAGTTTCGTTGCTCCCATGA
CTACACCACGAAGCACGGTGGGAGTTGCTGTTCTCCATAACAAGCTGTAT
GCAGTGGGTGGACGTGATGGGTCCTCGTGTTTGAGTTCTGTCGAAGTGTA
CGACCCGCACACCAACAAGTGGAGTTTGGCTGCTCCCATGATCAAGCGGA
GAGGAGGTAAGCTGTTTTCATGTTATATGTTTCATTGGTAGCATTTTTCT
TGGTCTAATGAAGATTGGCAGGTCAGTTGATGCTTATTGAATTTATTTGA
ACCCCTATGGTATTGTAGGAAGCACTTTGTATCGAACACGTTAGAATGCT
ATAACGCATTGGAAGTGTTCTGAGAAGAGCAGGATTAAGGAAGTTATTTA
CTTGTCATCATAATAAGTCTAATTAGCAAGCGAATTAGATCTTACTTTAA
ACCCTTCTCTAATCGGTTAAAAAAAAAAGATGCAAAATATGTGGTATTTT
TTAATGTATTGTGGTGGTTTACATAACTCCTGCTTAACAATTCTTAACTA
TAGATGCAATAATGATAAGAAATAGTGTGACGTAGATATTGAATCAATCG
AATTCTTTTGTTAAAGGATATATACAATAAATGACAGTCTACATTATTTC
ACCCTTTCTTTTTGTAGGTGTGGGTGTGTCAGTACTTCGTGGACACCTCT
ATGCAGCTGGAGGTCACGATGCTCCTGCCAGCTCCGATTACTCCAAACAA
TTTTCATCGGTTGAAAGATATGACCCGCGCATCGATCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAATGAAACTTCAAATGACCATTGTAGCTGTAAAATTAAGT
AGTTTTGAATTACTCATAGGGTACCTAGTAAACGGGGGTCAGCTCGCATG
AAATTCCATAAAGAGCAAAGAGAGCTTGGAAGATGATACCTCCTTCACAC
AGCCCCACTGGGAACCCTTCCCACTGGAAAAGTTGTCCAAAATATCGTCC
CGGGTGGGAAATTAACCCCGAACTTCTGGAACTTTTGTCCACACTGAAAA
TAATCAAATAAACCAAACCTCACTGAATAATATTATTCTACTTTTCCCAT
CCCCACTGAATTTTCTGATTTTTCCCCAGCCATAAAAAATAAAGGAATTT
CGACTTTCAGTCCATTATTTTTATCCCCACTGGCTAAAAAAATCCTACCG
GGTCTGTGAGAAGAGGGTGTAAGATTTCAAGCAAATTTCGTCAAACTATT
CGATTCTCAGGCCGGGTATGTTATTACGATACTCTTAAATTTTTGCCAAA
TTTCAGTCTGAATGTTCTTAACTGGGTCCTAATAAAAAAAAACTAAAACA
TGCAAAGCAGATCAATGGTCAGCGTGAGGAATATAGTAAGAATGAAGTTA
TCCATTCCATATGACCAAGAAATTTTTTAAAACCATAAAGAAAATACTTG
AATAGCGAAAGAAATACAGTATAAAACACATTGAAATTGACTATCGCTAA
ACAGGGAAAACGCTTTCTCTGTATTCCGTGGTTAAACCACATTATTTCTT
ATAAAAAGCGTCAACTTAATGAAAATTACGACTGCAACCTGCAACCGTTG
GACCAAAATATAGCCCCAAAATATTCTAGATCTCTTAATCCGTTAAGACG
CGATCACGTAATTGCGTAATCCAAAATCTCCCAAATGTTGAAAATTGAGT
TAGATTAAGTTTCGAAAAATGGAAAAATAGGGGGCAATTTTCCGGGGGGC
AATTTTCTTAGGGGGNTTTTTTATTGTTGAACGACTGACCCTTCTTTTTG
ATTAGTGGCGTGGCTTATATCAAATCAACTTAGTAGTTTTGCCTTCAAAA
ACATCCTTCGAATATACCTTTACAATACCAGAGCGTGTTTGCTTTCATTA
GATATGATCCAGTGACAGGACAATGGAGTTTCGTTGCTCCCATGACTACA
CCACGAAGCACGGTGGGAGTTGCTGTTCTCCATAACAAGCTGTATGCAGT
GGGTGGACGTGATGGGTCCTCGTGTTTGAGTTCTGTCGAAGTGTACGACC
CGCACACCAACAAGTGGAGTTTGGCTGCTCCCATGATCAAGCGGAGAGGA
GGTAAGCTGTTTTCATGTTATATGTTTCATTGGTAGCATTTTTCTTGGTC
TAATGAAGATTGGCAGGTCAGTTGATGCTTATTGAATTTATTTGAACCCC
TATGGTATTGTAGGAAGCACTTTGTTTCGAACACGTTAGAATGTTATAAC
GCATTGGAAGTGTTCTGAGAAGAGCAGGATTAAGGAAGTTATTTACTTGT
CATCATAATAAGTCTAATTAGCAAGCGAATTAGATCTTACTTTAAACCCT
TCTCTAATCGGTTTAAAAAAAACGATGCAAAATATGTGGTATTTTTTAAT
GTATTGTGGTGGTTTACATAACTCCTGCTTAACAATTCTTAACTATAGAT
GCAATAATGATAAGAAATAGTGTGACGTAGATATTGAATCAATCGAATTC
TTTTGTTAAAGGATATATACAATAAATGACAGTCTACATTATTTCACCCT
TTCTTTTTGTAGGTGTGGGTGTGTCAGTACTTCGTGGACACCTCTATGCA
GCTGGAGGTCACGATGCTCCTGCCAGCTCCGATTACTCCAAACAATTTTC
ATCGGTTGAAAGATATGACCCGCGCATCGATCATTGGTGTTTGATTTCTT
CCATGAAAAATTGTCGAGACGCGGTAGGGATGGCGGCGCTCGGTGATCGT
TTGTACTCAGTTGGAGGGTATGATGGCAACTCATATTTAGATGCTGTTGA
AGCTTACGATGCAGATTCGAACGATTGGCAATCGGTGGCGCCCTTAACAC
ACCCGCGGGCCGGCGCCTGTGTTGTGGCGTTAAAACTTTAAAGACTTTCA
ACTTCAATGACTTACATATTTCGCCAATCTCATGAAATTGATAGAGTACC
TTTAAAATACGCTACATAAAGCTATTCTGGTTTTGCAGAATGTTCACTTA
CCTTATCATCTTGTATAAATTGCTTTCTAGATCTACTGTATTTAAAAGGG
AGTTTATTTTGTTATACTACGCATTTGATTCATAGAATCTTTATAAGTTA
AACCATATCTTGCTATGGATAAGGTGTGAAATTTGATTCTCGTTCATTGA
AAATGATCTTTTCAAAACTGTCATCGCCTGACATACATATCACTCGTCTA
TAAATCTTGTTTGTGATACCCATGGTCTTCCTTTCACGCTTTACTTCCAC
TTTTTCGCTCGTTGTTGTATTTTTTTATTTATAAAGTTTTGTAAGGATGA
CGCATATATACTTAACTTGTACAAATGAAGTAGATATAATAATCATAATG
AAGATAGAATGTATATATTTACATATAACAAGTAGTTGTGATTTCTTTTG
TGGACATTTTCAATCTCCGTTATAACACGCTGTTCACCGCACTTTTGTTT
CACATACTAAACTTATCCGATCAGCCCCTTCCAACTTTTGTTTGTAAAGT
AAACAAATAGTCAAGTGAGTCCTGCATAGACAAAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010973XLOC_010973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019526-exon-sc0000329-1575043694:50707..51062TCONS_00019526-exon-sc0000329-1575043694:50707..51062Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1575043694:50207..50406TCONS_00019526-exon-sc0000329-1575043694:50207..50406Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1575043694:46824..47800TCONS_00019526-exon-sc0000329-1575043694:46824..47800Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1510915933:50707..51062TCONS_00019526-exon-sc0000329-1510915933:50707..51062Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1510915933:50207..50406TCONS_00019526-exon-sc0000329-1510915933:50207..50406Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1510915933:46824..47800TCONS_00019526-exon-sc0000329-1510915933:46824..47800Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1491911889:50707..51062TCONS_00019526-exon-sc0000329-1491911889:50707..51062Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1491911889:50207..50406TCONS_00019526-exon-sc0000329-1491911889:50207..50406Clytia hemisphaericaexon
TCONS_00019526-exon-sc0000329-1491911889:46824..47800TCONS_00019526-exon-sc0000329-1491911889:46824..47800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:46824..51062 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4103	13.7352	4.90868	3.628	4.82522	3.63138	4.16206	4.85349	4.8817	5.35515	3.85522	3.42946	4.00387	4.26266	2.76274	3.13789	5.55683	4.48654	4.42743	3.15885	3.88047	4.20514	8.13996	6.7097	3.78063	4.15416	3.24487	2.18862	4.89593	5.13803
Blast
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BLAST of TCONS_00019526 vs. Swiss-Prot (Human)
Match: KLHL5 (Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 4.809e-99
Identity = 162/236 (68.64%), Postives = 187/236 (79.24%), Query Frame = 1 
Query:  175 GGRDGLMTLNNVECFDPKTQKWENITPMLTHRHGLGVAVLSGPIYAVGGHDGWSYLSTVERYDPVTGQWSFVAPMTTPRSTVGVAVLHNKLYAVGGRDGSSCLSSVEVYDPHTNKWSLAAPMIKXXXXXXXXXXXXHLYAAGGHDAPASSDYSKQFSSVERYDPRIDHWCLISSMKNCRDAVGMAALGDRLYSVGGYDGNSYLDAVEAYDADSNDWQSVAPLTHPRAGACVVALKL 882
            GGRDGL TLN VEC++PKT+ W  + PM THRHGLGVAVL GP+YAVGGHDGWSYL+TVER+DP   QW+FVA M+TPRSTVGVAVL  KLYAVGGRDGSSCL SVE +DPHTNKW+L A M KRRGGVGV+   G LYA GGHDAPAS+  S+    VERYDP+ D W  ++SM   RDAVG+  LGD+LY+VGGYDG +YL+ VEAYD  +N+W  VAPL   RAGACVV +KL
Sbjct:  520 GGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQAYLNTVEAYDPQTNEWTQVAPLCLGRAGACVVTVKL 755
The following BLAST results are available for this feature:
BLAST of TCONS_00019526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLHL54.809e-9968.64Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2... [more]
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