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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019525 ID=TCONS_00019525|Name=TCONS_00019525|organism=Clytia hemisphaerica|type=transcript|length=2831bpRun BLAST on NCBI protein sequence of TCONS_00019525-protein >TCONS_00019525-protein ID=TCONS_00019525-protein|Name=TCONS_00019525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp MTSANEMVKSQKGYAELQKNTIKEREAVNEAQEKIRKGTIGLFSSKAKQERun BLAST on NCBI transcript from alignment at sc0000329:33315..46757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019525 ID=TCONS_00019525|Name=TCONS_00019525|organism=Clytia hemisphaerica|type=transcript|length=13443bp|location=Sequence derived from alignment at sc0000329:33315..46757- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000329:33315..46757- >TCONS_00019525 ID=TCONS_00019525|Name=TCONS_00019525|organism=Clytia hemisphaerica|type=CDS|length=18711bp|location=Sequence derived from alignment at sc0000329:33315..46757- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019525 vs. Swiss-Prot (Human)
Match: FCSD2 (F-BAR and double SH3 domains protein 2 OS=Homo sapiens GN=FCHSD2 PE=1 SV=3) HSP 1 Score: 308.916 bits (790), Expect = 3.029e-91 Identity = 218/712 (30.62%), Postives = 346/712 (48.60%), Query Frame = 3
Query: 156 PTQRKVKLTSALKSIQSEQASKLQNKFQLETDLLEDIKSYAKQRAAAESQYSQAMSKITNQLLGKFQXXXXXXXXXXXXQCLKSDGARFLKKNFGGQIWAKNYLKIXW*IL*CK*QFSIFFFHSRTPYGLWRKILEDTEKLANARLKVSQTLTNDVIESIKNLKIERTTTIKKCSTLNDKLHEELMTSANEMVKSQKGYAELQKNTIKEREAVNEAQEKIRKGTIGLFSSKAKQEKALSKANERREIAEKRSTSARNDYLLYIAATNAHQMKYYALDLPDLIAVQDGNIYENFKEYYNVITEAEKEVCEQELQNIQVLQEDIEQLQRAHAIQFFLKENPVFTKCIPYDMMPCTGDEVCNISHEFEAGL----ALNKEARKWCNRMVQKQKMIRKKNKQLTKLKQAVSTDNDLNQVAXXXXXXXXXXXXXXXXXXTREEMIEALTEEIRHLEVIRTKAEGRIQALKLAGIDTDNWLQGALTEIGETDDEDENENHPTQIQTGYDYSDEDNDFDAGDWDDPPNENLSVAAYSDDALSITSSDVTRTGTPAVIIYPFEATSPEELTVNDNEEIDFLETLGDG----WCKVRNKSGQVGFVPESYIEVRARGTSVXXXXXXXXXXXXXXXXXXXXDAWQVSLVPGEQPLPEVEVQQAQSPNYVCYAKAVYDYDACEDEELSFKEGDVIMVTSQEVDDDDGWWEGVLNGKRGVFPSI 2267
P RKVK+T LK+IQ EQ +KLQ K Q E DLLED++++++++AA E +Y+Q M K+ +Q +LK+++ G + A + R+ Y +W+ LE T ++A +R+ + + N + E + ++ + +K+C K+ EL + ++ K +K Y E ++ AV E + K + LF S+ +KA K RR ++T ARNDYLL +AA NAHQ +YY DL +++ DGN+Y++ K+Y + E E C+ Q L E+ ++ R + +Q FL+EN VF K P+ PC D + E E G +LNKEARKW R+ ++ K I + + L NDL + + E+ I+ E IR E+I+ KAE R+ LK G+ D WL+ A+ ++ E + E+E P + + + D + + + +N+ V DD+ S S + ++Y ++A+ P+ELT+ EE + LE + DG W K RNK GQVG+VPE Y++ TS + + + T S++ + LV G VC+ KA+YDY+ D+ELSF EG +I + ++E DDDG+WEG NG+ GVFPS+
Sbjct: 3 PPPRKVKVTQELKNIQVEQMTKLQAKHQAECDLLEDMRTFSQKKAAIEREYAQGMQKLASQ---------------------------YLKRDWPG-VKADDRNDY------------------RSMYPVWKSFLEGTMQVAQSRMNICENYKNFISEPARTVRSLKEQQLKRCVDQLTKIQTELQETVKDLAKGKKKYFETEQMA----HAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMKALDGNVYDHLKDYLIAFSRTELETCQAVQNTFQFLLENSSKVVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSRQL--ESETGTTEEHSLNKEARKWATRVAREHKNIVHQQRVL----------NDLECHGAAVSEQSRAEL---------EQKIDEARENIRKAEIIKLKAEARLDLLKQIGVSVDTWLKSAMNQVME-ELENERWARPPAVTSNGTLHSLNADTEREE-GEEFEDNMDVF---DDSSSSPSGTLRNYPLTCKVVYSYKASQPDELTI---EEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF---PTSNSLLSMLQSLAALDSRSHTSSNSTEAELVSGS----------LNGDASVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 622 The following BLAST results are available for this feature:
BLAST of TCONS_00019525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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