TCONS_00019511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019511
Unique NameTCONS_00019511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019511 ID=TCONS_00019511|Name=TCONS_00019511|organism=Clytia hemisphaerica|type=transcript|length=431bp
ctggatctaaaaaagattttaagatcgcgattttaccaaaatgaaatcca
gtaacttttcttccactttgactgaaaacattttttttgacaaaaaattg
gaaaaaaggtgtacacataccttaaccCGCCACAAGGCTGACAAGCACAA
CAAAATTAGCACCCGCCATAAGGATAGCAAGCACTGAATTACATTTACTC
AAATGGGGAAAATTTGACGATTTTATTTGTATAAGTTTTAGGTCATCCGA
GTAAAGGTTAACCCACCAGAAGGCTGACAAGCACAACAAAATTAGCACCC
GTTATAAGGCTAGCAAGCACTGAATTACATTTACTCAAATGGATAAAATT
TCATCTTAATGGTAAAGGTTTTTGGGGCATTGGAATGAAAGGTTAATCAA
TGAGACACAAGCACAACAAAATAAGCACCCG
Run BLAST on NCBI

transcript from alignment at sc0000329:172780..173621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019511 ID=TCONS_00019511|Name=TCONS_00019511|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0000329:172780..173621+ (Clytia hemisphaerica)
ctggatctaaaaaagattttaagatcgcgattttaccaaaatgaaatcca
gtaacttttcttccactttgactgaaaacattttttttgacaaaaaattg
gaaaaaaggtgtacacataccttaaccCGCCACAAGGCTGACAAGCACAA
CAAAATTAGCACCCGCCATAAGGATAGCAAGCACTGAATTACATTTACTC
AAATGGGGAAAATTTGACGATTTTATTTGTATAAGTTTTAGGTCATCCGA
GTAAAGGTTAACCCACCAGAAGGCTGACAAGCACAACAAAATTAGCACCC
GTTATAAGGCTAGCAAGCACTGAATTACATTTActcaaatggaaaaaaat
tgatgattttaTTTGTATAAGTTTTAGGTCATTCAAGTAAAAGGTTAACC
CGCCAGAAGGCTGACAAGCACAAAAAAATTAGCACCCGCCATAAGGCTAG
CAAGCACTGAATTACATTTActcaaatggaaaaaaattgatgattttaTT
TGTATAAGTTTTAGGTCATTCAAGTAAAAGGTTAACCCGCCAGAAGGCTG
ACAAGCACAAAAAAATTAGCACCCGCCATAAGGCTAGCAAGCACTGAATT
ACATTTActcaaatggaaaaaaattgatgattttaTTTGTATAAGTTTTA
GGTCATTCAAGTAAAAGGTTAACCCGCCAGAAGGCTGACAAACACAATAA
AATTAGCACCGGCCATAAGGCTAGCAAGCACTGGATTACATTTACTCAAA
TGGATAAAATTTCATCTTAATGGTAAAGGTTTTTGGGGCATTGGAATGAA
AGGTTAATCAATGAGACACAAGCACAACAAAATAAGCACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010968XLOC_010968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019511-exon-sc0000329-1491911889:172780..173107TCONS_00019511-exon-sc0000329-1491911889:172780..173107Clytia hemisphaericaexon
TCONS_00019511-exon-sc0000329-1510915933:172780..173107TCONS_00019511-exon-sc0000329-1510915933:172780..173107Clytia hemisphaericaexon
TCONS_00019511-exon-sc0000329-1575043694:172780..173107TCONS_00019511-exon-sc0000329-1575043694:172780..173107Clytia hemisphaericaexon
TCONS_00019511-exon-sc0000329-1491911889:173519..173621TCONS_00019511-exon-sc0000329-1491911889:173519..173621Clytia hemisphaericaexon
TCONS_00019511-exon-sc0000329-1510915933:173519..173621TCONS_00019511-exon-sc0000329-1510915933:173519..173621Clytia hemisphaericaexon
TCONS_00019511-exon-sc0000329-1575043694:173519..173621TCONS_00019511-exon-sc0000329-1575043694:173519..173621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:172780..173621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61565	1.23458	0.134409	1.04009	0.512257	0.437852	0.766791	0.510055	1.40625	1.00962	0.884613	2.14077	2.54125	2.43075	1.83116	1.92567	1.45158	3.73508	0.784903	1.69262	6.9984	4.02381	1.85639	2.63336	0	0	1.81723	2.87306	4.22503	4.88612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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